[cig-commits] commit: Add geomod 2004 extension
Mercurial
hg at geodynamics.org
Wed Oct 5 13:06:06 PDT 2011
changeset: 374:d72cd26b5081
tag: tip
user: Walter Landry <wlandry at caltech.edu>
date: Wed Oct 05 13:04:30 2011 -0700
files: Q2Pm1_input/benchmarks/geomod_2004_extension.xml
description:
Add geomod 2004 extension
diff -r dc54d3bd482d -r d72cd26b5081 Q2Pm1_input/benchmarks/geomod_2004_extension.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/Q2Pm1_input/benchmarks/geomod_2004_extension.xml Wed Oct 05 13:04:30 2011 -0700
@@ -0,0 +1,569 @@
+<?xml version="1.0"?>
+<StGermainData xmlns="http://www.vpac.org/StGermain/XML_IO_Handler/Jun2003">
+ <import>
+ <toolbox>Underworld</toolbox>
+ </import>
+ <plugins>
+ <struct>
+ <param name="Type">Underworld_EulerDeform</param>
+ <param name="Context">context</param>
+ </struct>
+ <struct>
+ <param name="Type">StgFEM_StandardConditionFunctions</param>
+ <param name="Context">context</param>
+ </struct>
+ </plugins>
+ <struct name="components">
+ <struct name="context">
+ <param name="Type">UnderworldContext</param>
+ </struct>
+ <struct name="mesh-Q2">
+ <param name="Type">FeMesh</param>
+ <param name="elementType">quadratic</param>
+ </struct>
+ <struct name="Q2Mesh-generator">
+ <param name="Type">C2Generator</param>
+ <param name="mesh">mesh-Q2</param>
+ <param name="dim">dim</param>
+ <param name="shadowDepth">shadowDepth</param>
+ <param name="regular">False</param>
+ <list name="size">
+ <param>elementResI</param>
+ <param>elementResJ</param>
+ <param>elementResK</param>
+ </list>
+ <list name="minCoord">
+ <param>minX</param>
+ <param>minY</param>
+ <param>minZ</param>
+ </list>
+ <list name="maxCoord">
+ <param>maxX</param>
+ <param>maxY</param>
+ <param>maxZ</param>
+ </list>
+ </struct>
+ <struct name="mesh-Pm1">
+ <param name="Type">FeMesh</param>
+ <param name="elementType">linear-inner</param>
+ </struct>
+ <struct name="Pm1Mesh-generator">
+ <param name="Type">InnerGenerator</param>
+ <param name="mesh">mesh-Pm1</param>
+ <param name="elementMesh">mesh-Q2</param>
+ <param name="dim">dim</param>
+ <param name="shadowDepth">shadowDepth</param>
+ <param name="regular">False</param>
+ <list name="size">
+ <param>elementResI</param>
+ <param>elementResJ</param>
+ <param>elementResK</param>
+ </list>
+ <list name="minCoord">
+ <param>minX</param>
+ <param>minY</param>
+ <param>minZ</param>
+ </list>
+ <list name="maxCoord">
+ <param>maxX</param>
+ <param>maxY</param>
+ <param>maxZ</param>
+ </list>
+ </struct>
+ <struct name="velocity">
+ <param name="Type">MeshVariable</param>
+ <param name="mesh">mesh-Q2</param>
+ <param name="Rank">Vector</param>
+ <param name="DataType">Double</param>
+ <param name="VectorComponentCount">dim</param>
+ <list name="names">
+ <param>vx</param>
+ <param>vy</param>
+ <param>vz</param>
+ </list>
+ </struct>
+ <struct name="velocityBCs">
+ <param name="Type">CompositeVC</param>
+ <param name="Data">mesh-Q2</param>
+ </struct>
+ <struct name="velocityICs">
+ <param name="Type">CompositeVC</param>
+ <param name="Data">mesh-Q2</param>
+ </struct>
+ <struct name="velocityDofLayout">
+ <param name="Type">DofLayout</param>
+ <param name="mesh">mesh-Q2</param>
+ <param name="BaseVariableCount">dim</param>
+ <list name="BaseVariables">
+ <param>vx</param>
+ <param>vy</param>
+ <param>vz</param>
+ </list>
+ </struct>
+ <struct name="VelocityField">
+ <param name="Type">FeVariable</param>
+ <param name="FEMesh">mesh-Q2</param>
+ <param name="DofLayout">velocityDofLayout</param>
+ <param name="BC">velocityBCs</param>
+ <param name="IC">velocityICs</param>
+ <param name="LinkedDofInfo">velocityLinkedDofs</param>
+ </struct>
+ <struct name="VelocityGradientsField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">Gradient</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="StrainRateField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">TensorSymmetricPart</param>
+ <param name="FeVariable">VelocityGradientsField</param>
+ </struct>
+ <struct name="StrainRateInvariantField">
+ <param name="Type">OperatorFeVariable</param>
+ <param name="Operator">SymmetricTensor_Invariant</param>
+ <param name="FeVariable">StrainRateField</param>
+ </struct>
+ <struct name="pressure">
+ <param name="Type">MeshVariable</param>
+ <param name="mesh">mesh-Pm1</param>
+ <param name="Rank">Scalar</param>
+ <param name="DataType">Double</param>
+ </struct>
+ <struct name="pressureDofLayout">
+ <param name="Type">DofLayout</param>
+ <param name="mesh">mesh-Pm1</param>
+ <list name="BaseVariables">
+ <param>pressure</param>
+ </list>
+ </struct>
+ <struct name="PressureField">
+ <param name="Type">FeVariable</param>
+ <param name="FEMesh">mesh-Pm1</param>
+ <param name="DofLayout">pressureDofLayout</param>
+ <param name="LinkedDofInfo">pressureLinkedDofs</param>
+ </struct>
+ <struct name="StressField">
+ <param name="Type">StressField</param>
+ <param name="StrainRateField">StrainRateField</param>
+ <param name="Context">context</param>
+ <param name="ConstitutiveMatrix">constitutiveMatrix</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="Mesh">mesh-Q2</param>
+ <param name="IC">stressICs</param>
+ </struct>
+ <struct name="ViscosityField">
+ <param name="Type">ViscosityField</param>
+ <param name="Context">context</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="Mesh">mesh-Q2</param>
+ <param name="ConstitutiveMatrix">constitutiveMatrix</param>
+ </struct>
+ <struct name="cellLayout">
+ <param name="Type">ElementCellLayout</param>
+ <param name="Mesh">mesh-Q2</param>
+ </struct>
+ <struct name="particleLayout">
+ <param name="Type">GaussParticleLayout</param>
+ <param name="gaussParticles">3</param>
+ </struct>
+ <struct name="gaussSwarm">
+ <param name="Type">IntegrationPointsSwarm</param>
+ <param name="CellLayout">cellLayout</param>
+ <param name="ParticleLayout">particleLayout</param>
+ <param name="FeMesh">mesh-Q2</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="IntegrationPointMapper">nearestMapper</param>
+ </struct>
+ <struct name="nearestMapper">
+ <param name="Type">NearestNeighborMapper</param>
+ <param name="IntegrationPointsSwarm">gaussSwarm</param>
+ <param name="MappedSwarm">picIntegrationPoints</param>
+ </struct>
+ <struct name="timeIntegrator">
+ <param name="Type">TimeIntegrator</param>
+ <param name="order">timeIntegratorOrder</param>
+ <param name="simultaneous">f</param>
+ <param name="Context">context</param>
+ </struct>
+ <struct name="weights">
+ <param name="Type">PCDVC</param>
+ <param name="resolutionX">20</param>
+ <param name="resolutionY">20</param>
+ <param name="resolutionZ">20</param>
+ <param name="lowerT">0.6</param>
+ <param name="upperT">25</param>
+ <param name="maxDeletions">3</param>
+ <param name="maxSplits">3</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ </struct>
+ <struct name="localLayout">
+ <param name="Type">MappedParticleLayout</param>
+ </struct>
+ <struct name="picIntegrationPoints">
+ <param name="Type">IntegrationPointsSwarm</param>
+ <param name="CellLayout">cellLayout</param>
+ <param name="ParticleLayout">localLayout</param>
+ <param name="FeMesh">mesh-Q2</param>
+ <param name="WeightsCalculator">weights</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="IntegrationPointMapper">mapper</param>
+ </struct>
+ <struct name="mapper">
+ <param name="Type">CoincidentMapper</param>
+ <param name="IntegrationPointsSwarm">picIntegrationPoints</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ </struct>
+ <struct name="materialSwarmParticleLayout">
+ <param name="Type">MeshParticleLayout</param>
+ <param name="cellParticleCount">particlesPerCell</param>
+ <param name="mesh">mesh-Q2</param>
+ </struct>
+ <struct name="pMovementHandler">
+ <param name="Type">ParticleMovementHandler</param>
+ </struct>
+ <struct name="pShadowSync">
+ <param name="Type">ParticleShadowSync</param>
+ </struct>
+ <struct name="materialSwarm">
+ <param name="Type">MaterialPointsSwarm</param>
+ <param name="CellLayout">cellLayout</param>
+ <param name="ParticleLayout">materialSwarmParticleLayout</param>
+ <param name="FeMesh">mesh-Q2</param>
+ <list name="ParticleCommHandlers">
+ <param>pMovementHandler</param>
+ <param>pShadowSync</param>
+ </list>
+ <param name="SplittingRoutine">splittingRoutine</param>
+ <param name="RemovalRoutine">removalRoutine</param>
+ <param name="EscapedRoutine">escapedRoutine</param>
+ </struct>
+ <struct name="materialSwarmAdvector">
+ <param name="Type">SwarmAdvector</param>
+ <param name="Swarm">materialSwarm</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="VelocityField">VelocityField</param>
+ <param name="PeriodicBCsManager">periodicBCsManager</param>
+ <param name="allowFallbackToFirstOrder">True</param>
+ </struct>
+ <struct name="solutionVelocity">
+ <param name="Type">SolutionVector</param>
+ <param name="FeVariable">VelocityField</param>
+ </struct>
+ <struct name="solutionPressure">
+ <param name="Type">SolutionVector</param>
+ <param name="FeVariable">PressureField</param>
+ </struct>
+ <struct name="mom_force">
+ <param name="Type">ForceVector</param>
+ <param name="FeVariable">VelocityField</param>
+ <param name="ExtraInfo">context</param>
+ </struct>
+ <struct name="cont_force">
+ <param name="Type">ForceVector</param>
+ <param name="FeVariable">PressureField</param>
+ <param name="ExtraInfo">context</param>
+ </struct>
+ <struct name="k_matrix">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">VelocityField</param>
+ <param name="ColumnVariable">VelocityField</param>
+ <param name="RHS">mom_force</param>
+ <param name="allowZeroElementContributions">False</param>
+ </struct>
+ <struct name="constitutiveMatrix">
+ <param name="Type">ConstitutiveMatrixCartesian</param>
+ <param name="Swarm">gaussSwarm</param>
+ <param name="StiffnessMatrix">k_matrix</param>
+ </struct>
+ <struct name="g_matrix">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">VelocityField</param>
+ <param name="ColumnVariable">PressureField</param>
+ <param name="RHS">mom_force</param>
+ <param name="transposeRHS">cont_force</param>
+ <param name="allowZeroElementContributions">False</param>
+ </struct>
+ <struct name="gradientStiffnessMatrixTerm">
+ <param name="Type">GradientStiffnessMatrixTerm</param>
+ <param name="Swarm">gaussSwarm</param>
+ <param name="StiffnessMatrix">g_matrix</param>
+ </struct>
+ <struct name="preconditioner">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">PressureField</param>
+ <param name="ColumnVariable">PressureField</param>
+ <param name="RHS">cont_force</param>
+ <param name="allowZeroElementContributions">True</param>
+ </struct>
+ <struct name="preconditionerTerm">
+ <param name="Type">UzawaPreconditionerTerm</param>
+ <param name="Swarm">gaussSwarm</param>
+ <param name="StiffnessMatrix">preconditioner</param>
+ </struct>
+ <struct name="uzawa">
+ <param name="Type">Stokes_SLE_UzawaSolver</param>
+ <param name="velocitySolver">matrixSolver</param>
+ <param name="Preconditioner">preconditioner</param>
+ <param name="tolerance">linearTolerance</param>
+ <param name="monitor">false</param>
+ <param name="maxIterations">5000</param>
+ <param name="minIterations">1</param>
+ </struct>
+ <struct name="stokesEqn">
+ <param name="Type">Stokes_SLE</param>
+ <param name="SLE_Solver">uzawa</param>
+ <param name="Context">context</param>
+ <param name="StressTensorMatrix">k_matrix</param>
+ <param name="GradientMatrix">g_matrix</param>
+ <param name="DivergenceMatrix"></param>
+ <param name="CompressibilityMatrix">c_matrix</param>
+ <param name="VelocityVector">solutionVelocity</param>
+ <param name="PressureVector">solutionPressure</param>
+ <param name="ForceVector">mom_force</param>
+ <param name="ContinuityForceVector">cont_force</param>
+ <param name="nonLinearMaxIterations">nonLinearMaxIterations</param>
+ <param name="nonLinearTolerance">nonLinearTolerance</param>
+ <param name="makeConvergenceFile">false</param>
+ </struct>
+ <struct name="c_matrix">
+ <param name="Type">StiffnessMatrix</param>
+ <param name="RowVariable">PressureField</param>
+ <param name="ColumnVariable">PressureField</param>
+ <param name="RHS">cont_force</param>
+ <param name="allowZeroElementContributions">True</param>
+ </struct>
+ <struct name="buoyancyForceTerm">
+ <param name="Type">BuoyancyForceTerm</param>
+ <param name="ForceVector">mom_force</param>
+ <param name="Swarm">picIntegrationPoints</param>
+ <param name="gravity">9.81</param>
+ </struct>
+ <struct name="backgroundShape">
+ <param name="Type">Everywhere</param>
+ </struct>
+ <struct name="pdmsShape">
+ <param name="Type">Box</param>
+ <param name="startX">0.05</param>
+ <param name="endX">0.15</param>
+ <param name="startY">0.0</param>
+ <param name="endY">0.005</param>
+ <param name="startZ">minZ</param>
+ <param name="endZ">maxZ</param>
+ </struct>
+ <struct name="crustShape">
+ <param name="Type">Intersection</param>
+ <list name="shapes">
+ <param>backgroundShape</param>
+ <param>!pdmsShape</param>
+ </list>
+ </struct>
+ <struct name="crustViscosity">
+ <param name="Type">MaterialViscosity</param>
+ <param name="eta0">1.0e2</param>
+<!-- <param name="eta0">1.0e12</param> -->
+ </struct>
+ <struct name="strainWeakening">
+ <param name="Type">StrainWeakening</param>
+ <param name="TimeIntegrator">timeIntegrator</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ <param name="initialSofteningStrain">0.5</param>
+ <param name="finalSofteningStrain">1.0</param>
+ <param name="initialDamageFraction">0.0</param>
+ <param name="initialDamageWavenumber">0.5</param>
+ <param name="initialDamageFactor">0.5</param>
+ <param name="healingRate">0.0</param>
+ </struct>
+ <struct name="yielding">
+ <param name="Type">DruckerPrager</param>
+ <param name="PressureField">PressureField</param>
+ <param name="VelocityGradientsField">VelocityGradientsField</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ <param name="Context">context</param>
+ <param name="StrainWeakening">strainWeakening</param>
+ <param name="StrainRateField">StrainRateField</param>
+ <param name="cohesion">10.0</param>
+ <param name="cohesionAfterSoftening">0.1</param>
+ <param name="frictionCoefficient">0.726542528005</param>
+ <param name="frictionCoefficientAfterSoftening">0.600860619027</param>
+ <param name="minimumViscosity">minimumViscosity</param>
+ <param name="maxStrainRate">maxStrainRate</param>
+ </struct>
+ <struct name="pdmsViscosity">
+ <param name="Type">MaterialViscosity</param>
+ <param name="eta0">5.0e-6</param>
+<!-- <param name="eta0">50000.0</param> -->
+ </struct>
+ <struct name="crust">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">crustShape</param>
+ <param name="density">1560.0</param>
+ <list name="Rheology">
+ <param>crustViscosity</param>
+ <param>yielding</param>
+ <param>storeViscosity</param>
+ <param>storeStress</param>
+ </list>
+ </struct>
+ <struct name="pdms">
+ <param name="Type">RheologyMaterial</param>
+ <param name="Shape">pdmsShape</param>
+ <param name="density">965.0</param>
+ <list name="Rheology">
+ <param>pdmsViscosity</param>
+ <param>storeViscosity</param>
+ <param>storeStress</param>
+ </list>
+ </struct>
+ <struct name="escapedRoutine">
+ <param name="Type">EscapedRoutine</param>
+ <param name="idealParticleCount">0</param>
+ </struct>
+ <struct name="velocityRemesher">
+ <param name="Type">RegularRemesherCmpt</param>
+ <param name="mesh">mesh-Q2</param>
+ <list name="remeshDims">
+ <param>0</param>
+ <param>1</param>
+ <param>2</param>
+ </list>
+ </struct>
+ <struct name="storeViscosity">
+ <param name="Type">StoreVisc</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ </struct>
+ <struct name="storeStress">
+ <param name="Type">StoreStress</param>
+ <param name="MaterialPointsSwarm">materialSwarm</param>
+ </struct>
+ </struct>
+
+ <list name="FieldVariablesToCheckpoint">
+ <param>VelocityField</param>
+ <param>PressureField</param>
+ <param>StrainRateInvariantField</param>
+ </list>
+ <param name="checkpointEvery">1</param>
+ <param name="timeIntegratorOrder">1</param>
+ <param name="maxTimeSteps">5000</param>
+ <param name="outputEvery">1</param>
+ <param name="dumpEvery">1</param>
+ <param name="outputPath">./output.extension</param>
+ <param name="dim">2</param>
+ <param name="shadowDepth">1</param>
+ <param name="minX">0.0f</param>
+ <param name="minY">0.0f</param>
+ <param name="minZ">0.0f</param>
+ <param name="maxX">0.20f</param>
+ <param name="maxY">0.035f</param>
+ <param name="maxZ">1.0f</param>
+ <param name="elementResI">128</param>
+ <param name="elementResJ">16</param>
+ <param name="elementResK">8</param>
+ <param name="allowUnbalancing">True</param>
+ <param name="buildNodeNeighbourTbl">True</param>
+ <param name="buildElementNeighbourTbl">True</param>
+ <param name="particlesPerCell">40</param>
+ <param name="seed">13</param>
+ <param name="gaussParticlesX">2</param>
+ <param name="gaussParticlesY">2</param>
+ <param name="gaussParticlesZ">2</param>
+ <struct name="EulerDeform">
+ <list name="systems">
+ <struct>
+ <param name="mesh">mesh-Q2</param>
+ <param name="innerMesh">mesh-Pm1</param>
+ <param name="remesher">velocityRemesher</param>
+ <param name="velocityField">VelocityField</param>
+ <param name="wrapTop">True</param>
+ </struct>
+ </list>
+ </struct>
+
+ <struct name="velocityBCs">
+ <param name="type">CompositeVC</param>
+ <list name="vcList">
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">front</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vz</param>
+ <param name="type">double</param>
+ <param name="value">0</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">back</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vz</param>
+ <param name="type">double</param>
+ <param name="value">0</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">left</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">double</param>
+ <param name="value">0.0</param>
+ </struct>
+ </list>
+ </struct>
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">right</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">double</param>
+ <param name="value">6.94444444444e4</param>
+<!-- <param name="value">6.94444444444e-6</param> -->
+ </struct>
+ </list>
+ </struct>
+
+ <struct>
+ <param name="type">WallVC</param>
+ <param name="wall">bottom</param>
+ <list name="variables">
+ <struct>
+ <param name="name">vy</param>
+ <param name="type">double</param>
+ <param name="value">0</param>
+ </struct>
+ <struct>
+ <param name="name">vx</param>
+ <param name="type">func</param>
+ <param name="value">StepFunction</param>
+ </struct>
+ </list>
+ </struct>
+ </list>
+ </struct>
+
+ <param name="StepFunctionLowerOffset">0.099</param>
+ <param name="StepFunctionUpperOffset">0.101</param>
+ <param name="StepFunctionValue">6.94444444444e4</param>
+<!-- <param name="StepFunctionValue">6.94444444444e-6</param> -->
+ <param name="StepFunctionDim">0</param>
+ <param name="StepFunctionLessThan">False</param>
+ <!-- <param name="checkpointEvery">100</param> -->
+ <param name="mgLevels">2</param>
+ <param name="dtFactor">1.0</param>
+ <param name="linearTolerance">1.0e-7</param>
+ <param name="nonLinearTolerance">1.0e-3</param>
+ <param name="maxUzawaIterations">5000</param>
+
+ <param name="journal.info">True</param>
+ <param name="journal.debug">True</param>
+ <param name="journal-level.info">2</param>
+ <param name="journal-level.debug">2</param>
+ <param name="minimumViscosity">1.0e-4</param>
+ <param name="maxStrainRate">5e8</param>
+</StGermainData>
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