[cig-commits] r18886 - seismo/3D/SPECFEM3D_GEOTECH/trunk/doc
homnath at geodynamics.org
homnath at geodynamics.org
Fri Sep 9 00:19:14 PDT 2011
Author: homnath
Date: 2011-09-09 00:19:13 -0700 (Fri, 09 Sep 2011)
New Revision: 18886
Removed:
seismo/3D/SPECFEM3D_GEOTECH/trunk/doc/SPECFEM3D_GEOTECH.aux
seismo/3D/SPECFEM3D_GEOTECH/trunk/doc/SPECFEM3D_GEOTECH.bbl
seismo/3D/SPECFEM3D_GEOTECH/trunk/doc/SPECFEM3D_GEOTECH.blg
seismo/3D/SPECFEM3D_GEOTECH/trunk/doc/SPECFEM3D_GEOTECH.log
seismo/3D/SPECFEM3D_GEOTECH/trunk/doc/SPECFEM3D_GEOTECH.toc
Log:
redundant files
Deleted: seismo/3D/SPECFEM3D_GEOTECH/trunk/doc/SPECFEM3D_GEOTECH.aux
===================================================================
--- seismo/3D/SPECFEM3D_GEOTECH/trunk/doc/SPECFEM3D_GEOTECH.aux 2011-09-09 07:13:40 UTC (rev 18885)
+++ seismo/3D/SPECFEM3D_GEOTECH/trunk/doc/SPECFEM3D_GEOTECH.aux 2011-09-09 07:19:13 UTC (rev 18886)
@@ -1,106 +0,0 @@
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-\bibcite{barragy1988}{{1}{1988}{{Barragy and Carey}}{{Barragy and Carey}}}
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-\bibcite{cubit2011}{{3}{2011}{{{CUBIT}}}{{{CUBIT}}}}
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-\bibcite{geuzaine2009}{{6}{2009}{{Geuzaine and Remacle}}{{Geuzaine and Remacle}}}
-\bibcite{gharti2011}{{7}{2011}{{Gharti et~al.}}{{Gharti, Komatitsch, Oye, Martin, and Tromp}}}
-\bibcite{gropp1994}{{8}{1994}{{Gropp et~al.}}{{Gropp, Lusk, and Skjellum}}}
-\bibcite{hughes1983}{{9}{1983}{{Hughes et~al.}}{{Hughes, Levit, and Winget}}}
-\bibcite{king1987}{{10}{1987}{{King and Sonnad}}{{King and Sonnad}}}
-\bibcite{komatitsch1999}{{11}{1999}{{Komatitsch and Tromp}}{{Komatitsch and Tromp}}}
-\bibcite{komatitsch1998}{{12}{1998}{{Komatitsch and Vilotte}}{{Komatitsch and Vilotte}}}
-\bibcite{larsen1995}{{13}{1995}{{Larsen and Schultz}}{{Larsen and Schultz}}}
-\bibcite{law1986}{{14}{1986}{{Law}}{{Law}}}
-\bibcite{pacheco1997}{{15}{1997}{{Pacheco}}{{Pacheco}}}
-\bibcite{patera1984}{{16}{1984}{{Patera}}{{Patera}}}
-\bibcite{pellegrini1996}{{17}{1996}{{Pellegrini and Roman}}{{Pellegrini and Roman}}}
-\bibcite{peter2011}{{18}{2011}{{Peter et~al.}}{{Peter, Komatitsch, Luo, Martin, Le~Goff, Casarotti, Le~Loher, Magnoni, Liu, Blitz, Nissen-Meyer, Basini, and Tromp}}}
-\bibcite{truegrid2006}{{19}{2006}{{Rainsberger}}{{Rainsberger}}}
-\bibcite{seriani1994}{{20}{1994}{{Seriani}}{{Seriani}}}
-\bibcite{smith2004}{{21}{2004}{{Smith and Griffiths}}{{Smith and Griffiths}}}
-\bibcite{zheng2005}{{22}{2005}{{Zheng et~al.}}{{Zheng, Liu, and Li}}}
-\bibcite{zienkiewicz1974}{{23}{1974}{{Zienkiewicz and Cormeau}}{{Zienkiewicz and Cormeau}}}
Deleted: seismo/3D/SPECFEM3D_GEOTECH/trunk/doc/SPECFEM3D_GEOTECH.bbl
===================================================================
--- seismo/3D/SPECFEM3D_GEOTECH/trunk/doc/SPECFEM3D_GEOTECH.bbl 2011-09-09 07:13:40 UTC (rev 18885)
+++ seismo/3D/SPECFEM3D_GEOTECH/trunk/doc/SPECFEM3D_GEOTECH.bbl 2011-09-09 07:19:13 UTC (rev 18886)
@@ -1,165 +0,0 @@
-\begin{thebibliography}{}
-
-\bibitem[\protect\citeauthoryear{Barragy and Carey}{Barragy and
- Carey}{1988}]{barragy1988}
-Barragy, E. and G.~F. Carey (1988).
-\newblock A parallel element-by-element solution scheme.
-\newblock {\em International Journal for Numerical Methods in
- Engineering\/}~{\em 26}, 2367--2382.
-
-\bibitem[\protect\citeauthoryear{Canuto, Hussaini, Quarteroni, and Zang}{Canuto
- et~al.}{1988}]{canuto1988}
-Canuto, C., M.~Y. Hussaini, A.~Quarteroni, and T.~A. Zang (1988).
-\newblock {\em Spectral methods in fluid dynamics}.
-\newblock Springer.
-
-\bibitem[\protect\citeauthoryear{{CUBIT}}{{CUBIT}}{2011}]{cubit2011}
-{CUBIT} (2011).
-\newblock {\em CUBIT 13.0 User Documentation}.
-\newblock Sandia National Laboratories.
-\newblock [Online; accessed 27-May-2011].
-
-\bibitem[\protect\citeauthoryear{EnSight}{EnSight}{2008}]{ensight2008}
-EnSight (2008).
-\newblock {\em EnSight User Manual\/} (Version 9.0 ed.).
-\newblock Salem Street, Suite 101, Apex, NC 27523 USA: Computational
- Engineering International, Inc.
-\newblock [Online; accessed 11-July-2011].
-
-\bibitem[\protect\citeauthoryear{Faccioli, Maggio, Paolucci, and
- Quarteroni}{Faccioli et~al.}{1997}]{faccioli1997}
-Faccioli, E., F.~Maggio, R.~Paolucci, and A.~Quarteroni (1997).
-\newblock {2D} and {3D} elastic wave propagation by a pseudo-spectral domain
- decomposition method.
-\newblock {\em Journal of Seismology\/}~{\em 1}, 237--251.
-
-\bibitem[\protect\citeauthoryear{Geuzaine and Remacle}{Geuzaine and
- Remacle}{2009}]{geuzaine2009}
-Geuzaine, C. and J.~F. Remacle (2009).
-\newblock Gmsh: a three-dimensional finite element mesh generator with built-in
- pre- and post-processing facilities.
-\newblock {\em International Journal for Numerical Methods in
- Engineering\/}~{\em 79\/}(11), 1309--1331.
-
-\bibitem[\protect\citeauthoryear{Gharti, Komatitsch, Oye, Martin, and
- Tromp}{Gharti et~al.}{2011}]{gharti2011}
-Gharti, H.~N., D.~Komatitsch, V.~Oye, R.~Martin, and J.~Tromp (2011).
-\newblock Application of an elastoplastic spectral-element method to {3D} slope
- stability analysis.
-\newblock {\em International Journal for Numerical Methods in
- Engineering\/}~{\em submitted}.
-
-\bibitem[\protect\citeauthoryear{Gropp, Lusk, and Skjellum}{Gropp
- et~al.}{1994}]{gropp1994}
-Gropp, W., E.~Lusk, and A.~Skjellum (1994).
-\newblock {\em Using {MPI}, portable parallel programming with the
- {M}essage-{P}assing {I}nterface}.
-\newblock Cambridge, USA: MIT Press.
-
-\bibitem[\protect\citeauthoryear{Hughes, Levit, and Winget}{Hughes
- et~al.}{1983}]{hughes1983}
-Hughes, T. J.~R., I.~Levit, and J.~Winget (1983).
-\newblock An element-by-element solution algorithm for problems of structural
- and solid mechanics.
-\newblock {\em Computer Methods in Applied Mechanics and Engineering\/}~{\em
- 36\/}(2), 241--254.
-
-\bibitem[\protect\citeauthoryear{King and Sonnad}{King and
- Sonnad}{1987}]{king1987}
-King, R.~B. and V.~Sonnad (1987).
-\newblock Implementation of an element-by-element solution algorithm for the
- finite element method on a coarse-grained parallel computer.
-\newblock {\em Computer Methods in Applied Mechanics and Engineering\/}~{\em
- 65\/}(1), 47--59.
-
-\bibitem[\protect\citeauthoryear{Komatitsch and Tromp}{Komatitsch and
- Tromp}{1999}]{komatitsch1999}
-Komatitsch, D. and J.~Tromp (1999).
-\newblock Introduction to the spectral element method for three-dimensional
- seismic wave propagation.
-\newblock {\em Geophysical Journal International\/}~{\em 139}, 806--822.
-
-\bibitem[\protect\citeauthoryear{Komatitsch and Vilotte}{Komatitsch and
- Vilotte}{1998}]{komatitsch1998}
-Komatitsch, D. and J.~P. Vilotte (1998).
-\newblock The spectral element method: An efficient tool to simulate the
- seismic response of {2D} and {3D} geological structures.
-\newblock {\em Bulletin of the Seismological Society of America\/}~{\em
- 88\/}(2), 368--392.
-
-\bibitem[\protect\citeauthoryear{Larsen and Schultz}{Larsen and
- Schultz}{1995}]{larsen1995}
-Larsen, S. and C.~A. Schultz (1995).
-\newblock {ELAS3D: 2D/3D elastic finite difference wave propagation code:
- Technical Report No. UCRL-MA-121792}.
-\newblock Technical report.
-
-\bibitem[\protect\citeauthoryear{Law}{Law}{1986}]{law1986}
-Law, K.~H. (1986).
-\newblock A parallel finite element solution method.
-\newblock {\em Computers \& Structures\/}~{\em 23\/}(6), 845--858.
-
-\bibitem[\protect\citeauthoryear{Pacheco}{Pacheco}{1997}]{pacheco1997}
-Pacheco, P. (1997).
-\newblock {\em Parallel Programming with {MPI}}.
-\newblock Morgan Kaufmann.
-
-\bibitem[\protect\citeauthoryear{Patera}{Patera}{1984}]{patera1984}
-Patera, A.~T. (1984).
-\newblock A spectral element method for fluid dynamics: laminar flow in a
- channel expansion.
-\newblock {\em Journal of Computational Physics\/}~{\em 54}, 468--488.
-
-\bibitem[\protect\citeauthoryear{Pellegrini and Roman}{Pellegrini and
- Roman}{1996}]{pellegrini1996}
-Pellegrini, F. and J.~Roman (1996).
-\newblock {SCOTCH}: A software package for static mapping by dual recursive
- bipartitioning of process and architecture graphs.
-\newblock {\em Lecture Notes in Computer Science\/}~{\em 1067}, 493--498.
-
-\bibitem[\protect\citeauthoryear{Peter, Komatitsch, Luo, Martin, Le~Goff,
- Casarotti, Le~Loher, Magnoni, Liu, Blitz, Nissen-Meyer, Basini, and
- Tromp}{Peter et~al.}{2011}]{peter2011}
-Peter, D., D.~Komatitsch, Y.~Luo, R.~Martin, N.~Le~Goff, E.~Casarotti,
- P.~Le~Loher, F.~Magnoni, Q.~Liu, C.~Blitz, T.~Nissen-Meyer, P.~Basini, and
- J.~Tromp (2011).
-\newblock Forward and adjoint simulations of seismic wave propagation on fully
- unstructured hexahedral meshes.
-\newblock {\em Geophysical Journal International\/}.
-\newblock accepted.
-
-\bibitem[\protect\citeauthoryear{Rainsberger}{Rainsberger}{2006}]{truegrid2006}
-Rainsberger, R. (2006).
-\newblock {\em TrueGrid User's Manual\/} (version 2.3.0 ed.).
-\newblock Livermore, CA: XYZ Scientific Applications, Inc.
-
-\bibitem[\protect\citeauthoryear{Seriani}{Seriani}{1994}]{seriani1994}
-Seriani, G. (1994).
-\newblock {3-D} large-scale wave propagation modeling by spectral element
- method on {Cray T3E} multiprocessor.
-\newblock {\em Computer Methods in Applied Mechanics and Engineering\/}~{\em
- 164}, 235--247.
-
-\bibitem[\protect\citeauthoryear{Smith and Griffiths}{Smith and
- Griffiths}{2004}]{smith2004}
-Smith, I.~M. and D.~V. Griffiths (2004).
-\newblock {\em Programming the finite element method}.
-\newblock John Wiley \& Sons.
-
-\bibitem[\protect\citeauthoryear{Zheng, Liu, and Li}{Zheng
- et~al.}{2005}]{zheng2005}
-Zheng, H., D.~F. Liu, and C.~G. Li (2005).
-\newblock Slope stability analysis based on elasto-plastic finite element
- method.
-\newblock {\em International Journal for Numerical Methods in
- Engineering\/}~{\em 64}, 1871--1888.
-
-\bibitem[\protect\citeauthoryear{Zienkiewicz and Cormeau}{Zienkiewicz and
- Cormeau}{1974}]{zienkiewicz1974}
-Zienkiewicz, O. and I.~Cormeau (1974).
-\newblock Visco-plasticity--plasticity and creep in elastic solids --- a
- unified numerical solution approach.
-\newblock {\em International Journal for Numerical Methods in
- Engineering\/}~{\em 8\/}(4), 821--845.
-
-\end{thebibliography}
Deleted: seismo/3D/SPECFEM3D_GEOTECH/trunk/doc/SPECFEM3D_GEOTECH.blg
===================================================================
--- seismo/3D/SPECFEM3D_GEOTECH/trunk/doc/SPECFEM3D_GEOTECH.blg 2011-09-09 07:13:40 UTC (rev 18885)
+++ seismo/3D/SPECFEM3D_GEOTECH/trunk/doc/SPECFEM3D_GEOTECH.blg 2011-09-09 07:19:13 UTC (rev 18886)
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===================================================================
--- seismo/3D/SPECFEM3D_GEOTECH/trunk/doc/SPECFEM3D_GEOTECH.log 2011-09-09 07:13:40 UTC (rev 18885)
+++ seismo/3D/SPECFEM3D_GEOTECH/trunk/doc/SPECFEM3D_GEOTECH.log 2011-09-09 07:19:13 UTC (rev 18886)
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Deleted: seismo/3D/SPECFEM3D_GEOTECH/trunk/doc/SPECFEM3D_GEOTECH.toc
===================================================================
--- seismo/3D/SPECFEM3D_GEOTECH/trunk/doc/SPECFEM3D_GEOTECH.toc 2011-09-09 07:13:40 UTC (rev 18885)
+++ seismo/3D/SPECFEM3D_GEOTECH/trunk/doc/SPECFEM3D_GEOTECH.toc 2011-09-09 07:19:13 UTC (rev 18886)
@@ -1,40 +0,0 @@
-\contentsline {chapter}{Licensing}{i}
-\contentsline {chapter}{Acknowledgments}{ii}
-\contentsline {chapter}{\numberline {1}Introduction}{1}
-\contentsline {section}{\numberline {1.1}Background}{1}
-\contentsline {section}{\numberline {1.2}Status summary}{1}
-\contentsline {chapter}{\numberline {2}Getting started}{3}
-\contentsline {section}{\numberline {2.1}Package structure}{3}
-\contentsline {section}{\numberline {2.2}Prerequisites}{3}
-\contentsline {section}{\numberline {2.3}Compile}{4}
-\contentsline {subsubsection}{Serial program}{4}
-\contentsline {subsubsection}{Parallel program}{4}
-\contentsline {section}{\numberline {2.4}Run}{5}
-\contentsline {subsubsection}{Serial run}{5}
-\contentsline {subsubsection}{Parallel run}{5}
-\contentsline {chapter}{\numberline {3}Input}{6}
-\contentsline {section}{\numberline {3.1}Main input file}{6}
-\contentsline {subsection}{\numberline {3.1.1}Line types}{6}
-\contentsline {subsection}{\numberline {3.1.2}Arguments}{7}
-\contentsline {subsection}{\numberline {3.1.3}Examples of main input file}{9}
-\contentsline {section}{\numberline {3.2}Input files detail}{11}
-\contentsline {subsection}{\numberline {3.2.1}Coordinates files: \texttt {xfile, yfile, zfile}}{11}
-\contentsline {subsection}{\numberline {3.2.2}Connectivity file: \texttt {confile}}{11}
-\contentsline {subsection}{\numberline {3.2.3}Element IDs file: \texttt {idfile}}{12}
-\contentsline {subsection}{\numberline {3.2.4}Ghost partition interfaces file: \texttt {gfile}}{13}
-\contentsline {subsection}{\numberline {3.2.5}Traction file: \texttt {trfile}}{13}
-\contentsline {subsection}{\numberline {3.2.6}Water surface file: \texttt {wsfile}}{14}
-\contentsline {chapter}{\numberline {4}Output and Visualization}{16}
-\contentsline {section}{\numberline {4.1}Output files}{16}
-\contentsline {subsection}{\numberline {4.1.1}Summary file}{16}
-\contentsline {subsection}{\numberline {4.1.2}Mesh files}{16}
-\contentsline {subsection}{\numberline {4.1.3}Displacement field file}{16}
-\contentsline {subsection}{\numberline {4.1.4}Pore pressure file}{16}
-\contentsline {subsection}{\numberline {4.1.5}CASE file}{16}
-\contentsline {subsection}{\numberline {4.1.6}SOS file}{17}
-\contentsline {section}{\numberline {4.2}Visualization}{17}
-\contentsline {subsection}{\numberline {4.2.1}Serial visualization}{17}
-\contentsline {subsection}{\numberline {4.2.2}Parallel visualization}{17}
-\contentsline {chapter}{\numberline {5}Utilities}{18}
-\contentsline {section}{\numberline {5.1}Convert EXODUS mesh into SEM files}{18}
-\contentsline {section}{\numberline {5.2}Generate SOS file}{18}
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