[cig-commits] r19555 - in mc/3D/CitcomS/trunk: . examples
emheien at geodynamics.org
emheien at geodynamics.org
Wed Feb 1 13:11:35 PST 2012
Author: emheien
Date: 2012-02-01 13:11:35 -0800 (Wed, 01 Feb 2012)
New Revision: 19555
Added:
mc/3D/CitcomS/trunk/examples/README
Modified:
mc/3D/CitcomS/trunk/ChangeLog
mc/3D/CitcomS/trunk/configure.ac
Log:
Updated ChangeLog, configure.ac for 3.1.2 release
Set default configuration to not setup Pyre
Added note in examples directory regarding Pyre and Cookbooks
Modified: mc/3D/CitcomS/trunk/ChangeLog
===================================================================
--- mc/3D/CitcomS/trunk/ChangeLog 2012-02-01 20:02:16 UTC (rev 19554)
+++ mc/3D/CitcomS/trunk/ChangeLog 2012-02-01 21:11:35 UTC (rev 19555)
@@ -1,3 +1,893 @@
+2012-01-24 21:54 becker
+
+ * lib/Ggrd_handling.c, lib/Instructions.c, lib/global_defs.h: Fixed
+ minor ggrd assignment bug.
+
+2012-01-24 18:44 becker
+
+ * lib/Ggrd_handling.c, lib/Instructions.c: Debugging GGrd
+
+2012-01-24 18:03 becker
+
+ * lib/Ggrd_handling.c, lib/Instructions.c, lib/global_defs.h:
+ Updating to latest version for sync.
+
+2012-01-19 19:24 tan2
+
+ * configure.ac: Stop configure if pyre is enabled and python 2.7 is
+ used. See Issue622.
+
+2012-01-17 04:57 tan2
+
+ * INSTALL: updated installation instruction
+
+2012-01-17 02:41 tan2
+
+ * configure.ac: When python 2.7 is used, ask users to download
+ pythia manually. See issue622 and issue606.
+
+2012-01-14 08:00 becker
+
+ * lib/Advection_diffusion.c, lib/Composition_related.c,
+ lib/Drive_solvers.c, lib/Ggrd_handling.c, lib/Output_gzdir.c,
+ lib/Pan_problem_misc_functions.c, lib/Topo_gravity.c,
+ lib/Viscosity_structures.c: Made sure that compositional
+ viscosity without compositional buoyancy can be assigned without
+ setting ibuoy=1 and the buoyancy number to zero.
+
+2011-12-20 18:04 becker
+
+ * lib/Ggrd_handling.c, lib/Instructions.c, lib/Topo_gravity.c,
+ lib/global_defs.h: Merged with recent check in, minor changes.
+
+2011-11-14 05:06 tan2
+
+ * lib/Regional_boundary_conditions.c: Fixed a bug in reflective TBC
+ where y-index should be used, not z-index. The bug is harmless
+ though.
+
+ I checked the code history. This bug exists since CitcomS 1.0,
+ but not in CitcomCU nor CitcomT.
+
+2011-10-14 18:27 tan2
+
+ * lib/Output_h5.c: fixed a bug that h5close_field() didn't have a
+ return statement, reported by Nicolas Flament in issue611.
+
+2011-09-18 03:54 tan2
+
+ * lib/Initial_temperature.c: fixed a bug that when the perturblayer
+ is on the internal boundary, the temperature perturbation wasn't
+ added to the lower processor.
+
+2011-07-31 20:38 becker
+
+ * lib/Ggrd_handling.c, lib/Initial_temperature.c,
+ lib/Instructions.c, lib/Stokes_flow_Incomp.c, lib/global_defs.h:
+ Updating to newest version, don't think that there should be any
+ significant changes on my side.
+
+2011-07-12 16:27 tan2
+
+ * CitcomS/Components/Output.py, lib/Instructions.c, lib/Output.c,
+ lib/Output_vtk.c, lib/global_defs.h, module/setProperties.c:
+ enhancing VTK output, mostly contributed by Rene Gassmoeller at
+ GFZ.
+
+ - A new input parameter 'vtk_format', which can be either 'ascii'
+ (default) or 'binary'. When 'binary', gzip and base64 encoding
+ are used. - The node ordering is changed to CitcomS native
+ ordering. The consequence is the axis are rotated as z in CitcomS
+ is mapped to X in vtk, and x to Y, y to Z. - More data can be
+ outputted in vtk format - Using .pvts file for regional model;
+ .vtm and .visit file for global model (.vtm format provided by
+ Tobias Hoeink at Rice, .visit format provided by Kat at
+ visitusers.org/forum)
+
+2011-03-21 00:13 becker
+
+ * lib/Topo_gravity.c: Fixed typo for anisotropic stress
+ computation.
+
+2011-02-22 04:13 becker
+
+ * lib/Drive_solvers.c, lib/Instructions.c, lib/global_defs.h: Added
+ a flag force_iteration which if on (off by default), will enforce
+ an iterative solution to the velocity fields even if linear
+ rheologies were chosen. This is useful for debugging/robustness
+ tests.
+
+2011-02-18 19:45 becker
+
+ * lib, lib/Anisotropic_viscosity.c, lib/Output_gzdir.c,
+ lib/anisotropic_viscosity.h: Modified storage of anisotropic
+ viscosity files. Those are now
+
+2011-02-14 05:45 becker
+
+ * lib/Output_vtk.c: Improved vtk output, still for Dan to test.
+
+2011-02-12 05:30 becker
+
+ * lib/Anisotropic_viscosity.c, lib/anisotropic_viscosity.h: Aedded
+ the actual files because I didn't know how to link from CitcomCU.
+
+ Those are didentical
+
+2011-02-12 05:20 becker
+
+ * lib/Anisotropic_viscosity.c, lib/anisotropic_viscosity.h:
+
+2011-02-08 04:06 becker
+
+ * lib/Citcom_init.c, lib/Tracer_setup.c: Removed the srand() call
+ that seemed like a good idea (rev. 17175) but screwed up
+ tracer-based runs with large number of processors (12x3x3x2).
+ Weird, but oh well. Someone advise why this didn't work?
+
+2011-02-07 19:00 becker
+
+ * lib/Ggrd_handling.c: Added one missing line for anisotropic
+ viscosity init.
+
+2011-02-07 00:32 becker
+
+ * lib/Ggrd_handling.c: Reversed, temporarily, the use of
+ nearneighbor because it makes it easier to compare model
+ computations with previous versions.
+
+2011-02-06 23:57 becker
+
+ * lib/Full_boundary_conditions.c: Fixed typo that was introduced in
+ 17555 and made temperature field assignment apparently screwed
+ up.
+
+2011-02-05 23:45 becker
+
+ * lib/Instructions.c: Backward compatibility of neglect of both
+ divergence and pressure for convergence checks.
+
+2011-02-04 05:03 becker
+
+ * lib/Viscosity_structures.c: Temporarily moved velocity gradient
+ computation to ensure compilation.
+
+2011-02-03 21:06 becker
+
+ * lib/Ggrd_handling.c, lib/Parsing.c, lib/Viscosity_structures.c,
+ lib/global_defs.h, lib/prototypes.h: Uptdated prototypes file.
+
+ Fixed a few compiler complaints.
+
+ Made sure that atemp is always set in Viscosity_structures,
+ making mat_control > 0 feasible, not just 0 or 1
+
+2011-02-03 17:11 becker
+
+ * lib/Ggrd_handling.c, lib/Pan_problem_misc_functions.c,
+ lib/Viscosity_structures.c, lib/ggrd_handling.h,
+ lib/prototypes.h: Forgot some functions, not sure why the linker
+ didn't complain previously.
+
+2011-02-02 01:09 becker
+
+ * lib/Instructions.c, lib/Topo_gravity.c,
+ lib/Viscosity_structures.c: Futher synchronization with CitcomCU
+ anisotropic viscosity.
+
+2011-02-02 00:30 becker
+
+ * lib/Anisotropic_viscosity.c, lib/Element_calculations.c,
+ lib/Topo_gravity.c, lib/anisotropic_viscosity.h,
+ lib/global_defs.h, lib/viscosity_descriptions.h: Trial
+ synchronization between CitcomCU and CitcomS anisotropic
+ viscosity.
+
+2011-01-26 00:14 becker
+
+ * lib/Full_parallel_related.c, lib/General_matrix_functions.c,
+ lib/Ggrd_handling.c: Added parentheses for logic statements as
+ per compiler suggestion
+
+2011-01-19 21:00 becker
+
+ * lib/Advection_diffusion.c: Checking in Shijie Zhong's revised
+ Advection_diffusion routine.
+
+2010-12-29 20:47 becker
+
+ * lib/Ggrd_handling.c: Added support for non-interpolated grd
+ input.
+
+2010-12-22 21:53 becker
+
+ * lib/Anisotropic_viscosity.c, lib/BC_util.c,
+ lib/Full_boundary_conditions.c, lib/Ggrd_handling.c,
+ lib/Regional_boundary_conditions.c, lib/Solver_multigrid.c,
+ lib/prototypes.h: Minor fixes for compile, still hunting for
+ convergence problem.
+
+2010-12-08 21:06 becker
+
+ * lib/BC_util.c, lib/Full_boundary_conditions.c,
+ lib/Regional_boundary_conditions.c, lib/prototypes.h: Reverted to
+ separate horizontal_bc routines for regional and full. the former
+ has a check for
+
+ ROW==E->lmesh.NOZ[level] &&
+ E->parallel.me_loc[3]==E->parallel.nprocz-1
+
+ while the full version has
+
+ ROW==E->mesh.NOZ[level]) &&
+ (E->parallel.me_loc[3]==E->parallel.nprocz-1) )
+
+2010-12-08 20:14 becker
+
+ * lib/BC_util.c: Reverted the rowl adjustment since it didn't fix
+ the problem reported by Dan.
+
+2010-12-08 18:43 becker
+
+ * lib/global_defs.h: Added definition of TRUE (1) and FALSE (0) in
+ case undefined (was defined for GMT/ggrd compile before).
+
+2010-12-08 00:54 becker
+
+ * lib/BC_util.c: Addded a test for top or bottom nodal row back
+ into horizontal_bc (earlier moved from
+ Regional_boundary_conditions and Full_boundary_conditions to
+ BC_util.c) to see if this helps fix a bug reported by Dan that I
+ could not reproduce in the non-pyre version.
+
+2010-10-12 06:36 becker
+
+ * lib/Anisotropic_viscosity.c, lib/Drive_solvers.c,
+ lib/Ggrd_handling.c, lib/Instructions.c: More accurate
+ computation of element coordinates in anisotropic part.
+
+2010-09-24 03:35 becker
+
+ * lib/Anisotropic_viscosity.c, lib/Element_calculations.c,
+ lib/Instructions.c: Augmented G matrix with anisotropic
+ computation, may or may not be a good idea.
+
+2010-09-15 10:40 becker
+
+ * lib/General_matrix_functions.c, lib/prototypes.h: Missed one
+ routine.
+
+2010-09-15 10:36 becker
+
+ * lib/Anisotropic_viscosity.c, lib/BC_util.c, lib/Convection.c,
+ lib/Element_calculations.c, lib/General_matrix_functions.c,
+ lib/Instructions.c, lib/Obsolete.c, lib/Output.c,
+ lib/Size_does_matter.c, lib/Solver_multigrid.c,
+ lib/Topo_gravity.c, lib/anisotropic_viscosity.h,
+ lib/global_defs.h, lib/prototypes.h: Suggested use of general
+ prototypes
+
+ Retired N>3 matrix determinant functions (because they caused
+ compile problems)
+
+2010-09-14 01:08 becker
+
+ * lib/Viscosity_structures.c: Read in sdepv_misfit regardless of
+ rheology.
+
+2010-09-13 14:07 becker
+
+ * lib/Anisotropic_viscosity.c, lib/Drive_solvers.c,
+ lib/Element_calculations.c, lib/Ggrd_handling.c,
+ lib/Topo_gravity.c, lib/Viscosity_structures.c,
+ lib/anisotropic_viscosity.h, lib/global_defs.h,
+ lib/viscosity_descriptions.h: Added option to start with
+ isotropic viscosity during first anisotropic iteration.
+
+2010-09-13 12:01 becker
+
+ * lib/Anisotropic_viscosity.c, lib/Element_calculations.c,
+ lib/Ggrd_handling.c, lib/Topo_gravity.c,
+ lib/anisotropic_viscosity.h: Forgot part of the rotation matrix,
+ minor fixes else, still experimental.
+
+2010-09-13 07:13 becker
+
+ * configure.ac, lib/Anisotropic_viscosity.c,
+ lib/Element_calculations.c, lib/Ggrd_handling.c,
+ lib/Instructions.c, lib/Output.c, lib/Output_gzdir.c,
+ lib/Solver_multigrid.c, lib/Topo_gravity.c,
+ lib/Viscosity_structures.c, lib/anisotropic_viscosity.h,
+ lib/global_defs.h, lib/viscosity_descriptions.h: Made sure
+ current version compiled nicely without additional flags.
+
+ Anisotropic viscosity is set up more flexibly.
+
+2010-09-07 07:05 becker
+
+ * lib/Ggrd_handling.c, lib/Instructions.c, lib/Output_gzdir.c,
+ lib/Viscosity_structures.c, lib/global_defs.h: Made sure that
+ viscosity prefactors get assigned for material dependent
+ viscosity only (TDEPV = off)
+
+2010-09-07 02:22 becker
+
+ * lib/Citcom_init.c, lib/Tracer_setup.c: Added random number
+ generator initialization to ensure exact reproducibility of all
+ runs, including those with tracers.
+
+ Earlier reported solver issues might be related to our cluster,
+ at least all revisions seems to give the same answer now.
+
+2010-09-07 01:40 becker
+
+ * lib/Anisotropic_viscosity.c, lib/Ggrd_handling.c,
+ lib/Nodal_mesh.c, lib/Viscosity_structures.c,
+ lib/viscosity_descriptions.h: Checking in current version because
+ of need for debugging.
+
+ Revision 17172, compared to (presumably) 17153 give strange
+ multigrid convergence behavior. Checking why that is now.
+
+2010-09-06 05:20 becker
+
+ * configure.ac, lib/Anisotropic_viscosity.c, lib/Drive_solvers.c,
+ lib/Element_calculations.c, lib/Ggrd_handling.c,
+ lib/Instructions.c, lib/Makefile.am, lib/Nodal_mesh.c,
+ lib/Output.c, lib/Output_gzdir.c,
+ lib/Pan_problem_misc_functions.c, lib/Solver_multigrid.c,
+ lib/Topo_gravity.c, lib/Tracer_setup.c,
+ lib/Viscosity_structures.c, lib/anisotropic_viscosity.h,
+ lib/ggrd_handling.h, lib/global_defs.h,
+ lib/viscosity_descriptions.h: Trial implementation of anisotropic
+ viscosity.
+
+2010-08-30 20:41 tan2
+
+ * CitcomS/Coupler/Coupler.py, module/Exchanger/BaseSVTInlet.cc,
+ module/Exchanger/BaseSVTInlet.h: Added support of multigrid
+ solver in Exchanger. Lifted the solver assertion in Coupler.
+
+ Cookbook9 can be converted to multigrid solver once appropriate
+ parameters (*solver.mesher.levels=2 and
+ *solver.vsolver.Solver=multigrid) are added. However, the
+ embedded solver will converge incorrectly. Setting
+ esolver.vsolver.accuracy=6e-3 seems to fix the problem.
+
+2010-05-25 02:47 becker
+
+ * lib/BC_util.c: And a typo fix.
+
+2010-05-24 18:00 becker
+
+ * lib/BC_util.c, lib/Ggrd_handling.c, lib/Initial_temperature.c,
+ lib/Instructions.c, lib/ggrd_handling.h, lib/global_defs.h:
+ toplayerbc > 0 will now assign BCs for all noes with r >=
+ toplayerbc_r, which defaults to 0.984303876942 i.e. 100 km depth.
+ (Still experimental.)
+
+2010-03-12 00:41 becker
+
+ * lib/BC_util.c, lib/Ggrd_handling.c: Improvements for internal
+ BCs.
+
+2010-03-10 19:55 becker
+
+ * lib/BC_util.c, lib/Ggrd_handling.c, lib/Topo_gravity.c: This
+ logic should make more sense for internal BCs, but still testing.
+
+2010-03-10 19:38 becker
+
+ * lib/BC_util.c, lib/Full_boundary_conditions.c,
+ lib/Ggrd_handling.c, lib/Instructions.c,
+ lib/Regional_boundary_conditions.c, lib/Topo_gravity.c,
+ lib/global_defs.h: Experimental implementation of a single node
+ layer for internal boundary condition assignment, assigned if
+ toplayerbc < 0, to nodes at layer noz+toplayerbc, but only for
+ the top level multigrid, for now.
+
+2010-02-26 21:04 walter
+
+ * lib/Topo_gravity.c: Fix a misleading comment
+
+2010-02-02 23:41 walter
+
+ * Makefile.am: Fix an error when running autoreconf -i
+
+2010-02-01 19:43 becker
+
+ * lib/Viscosity_structures.c, lib/viscosity_descriptions.h: Changed
+ internal variable name for use_se_smoothing, as per Eh's
+ suggestion.
+
+2010-01-29 14:48 becker
+
+ * lib/Viscosity_structures.c, lib/viscosity_descriptions.h: Added
+ old CitcomS element -> nodes -> element viscosity smoothing with
+ new use_ne_visc_smooth parameter, default is off.
+
+2010-01-21 21:23 tan2
+
+ * CitcomS/Components/Stokes_solver/Incompressible.py,
+ module/setProperties.c: Added pyre input for the new parameters
+ added in r16138.
+
+2010-01-21 21:22 tan2
+
+ * module/Exchanger/CitcomInterpolator.cc: Replaced fixed accuracy
+ setting. Bug reported by Rob Moucha.
+
+2010-01-21 20:11 tan2
+
+ * visual/OpenDXMacro/CitcomSImportOpt.net, visual/visFull.cfg,
+ visual/visFull.net.in: Added opendx macro to visualize opt (e.g.
+ composition) fields. This fixed Issue99.
+
+2010-01-17 01:19 danb
+
+ * lib/Composition_related.c, lib/Tracer_setup.c, lib/tracer_defs.h:
+ Preliminary support for the absolute tracer method. Only tested
+ with one flavor, reading in from a file, and the initial volume
+ of the tracers is HARD-CODED! In addition, the code automaticaly
+ truncates the composition to one, although this should be a
+ switch for the user to specify.
+
+2010-01-16 02:47 becker
+
+ * lib/Instructions.c, lib/Nodal_mesh.c, lib/Stokes_flow_Incomp.c,
+ lib/Viscosity_structures.c, lib/global_defs.h: Implementation of
+ two, perhaps entirely unnecessary features, in search of why
+ certain prescribed velocity models do not converge like they
+ should.
+
+ - allow for each inner loop solution to have a higher accuracy
+ than the outer, Uzawa loop. This is set by new parameter
+ "inner_accuracy_scale", which pre-multiplies the inner accuracy
+ (imp) setting (defaults to unity)
+
+ - remove any rigid body rotation at each Uzawa iteration step.
+ Parmaeter "inner_remove_rigid_rotation", by default off. For
+ this, I also added an experimental routine assign_v_to_vector()
+ in order to reasign the V velocities to the U solution vector
+ after removing the net rotations from V (how is supposed to work
+ for the regular operational mode?)
+
+2009-12-09 02:25 tan2
+
+ * lib/BC_util.c: Replaced TRUE and FALSE. Added function
+ prototypes.
+
+2009-12-08 21:44 tan2
+
+ * CitcomS/Components/Stokes_solver/Incompressible.py,
+ lib/Instructions.c, lib/Stokes_flow_Incomp.c, lib/global_defs.h,
+ module/setProperties.c: Added two boolean parameters for
+ controlling convergence criterion:
+
+ check_continuity_convergence (default=on): include div/v in the
+ criterion. check_pressure_convergence (default=on): include dp/p
+ in the criterion.
+
+ Retired the parameter: only_check_vel_convergence.
+
+2009-12-08 21:43 tan2
+
+ * lib/Drive_solvers.c: removed unused variables in Drive_solvers.c
+
+2009-12-08 21:43 tan2
+
+ * lib/Drive_solvers.c, lib/Element_calculations.c,
+ lib/Stokes_flow_Incomp.c, module/bindings.c,
+ module/stokes_solver.c, module/stokes_solver.h: Merged
+ solve_constrained_flow_iterative_pseudo_surf() with void
+ solve_constrained_flow_iterative(); assemble_forces_pseudo_surf()
+ wi
+
+ Removed used python bindings in module/stokes_solver.c
+
+2009-12-08 17:19 becker
+
+ * lib/BC_util.c, lib/Ggrd_handling.c, lib/Topo_gravity.c: Truly
+ apply internal boundary conditions on horizontal surfaces for
+ E->mesh.toplayerbc > 0 (default, of course, 0)
+
+2009-12-04 23:16 becker
+
+ * lib/BC_util.c: Modified handling of internal BCs, as per Eh's
+ suggestion, now handled in a separate function.
+
+2009-12-04 21:57 tan2
+
+ * README: Removed metioning the version number in README. Added the
+ url of the manual.
+
+2009-12-04 17:44 becker
+
+ * lib/BC_util.c, lib/Full_boundary_conditions.c,
+ lib/Full_read_input_from_files.c, lib/Ggrd_handling.c,
+ lib/Regional_boundary_conditions.c,
+ lib/Regional_read_input_from_files.c, lib/ggrd_handling.h:
+ Suggested unified treatment of horizontal_bc (moved to BC_util)
+ for review by Eh
+
+ Improved handling of grd-read velocity and traction boundary
+ conditions.
+
+2009-12-04 02:33 becker
+
+ * lib/Full_boundary_conditions.c, lib/Ggrd_handling.c,
+ lib/Regional_boundary_conditions.c: Temporary fix for regular
+ operations, for Eh's review.
+
+ Ggrd assignment still needs tending to.
+
+2009-12-03 23:51 becker
+
+ * lib/BC_util.c, lib/Full_boundary_conditions.c,
+ lib/Full_read_input_from_files.c, lib/Ggrd_handling.c,
+ lib/Instructions.c, lib/Regional_boundary_conditions.c,
+ lib/Regional_read_input_from_files.c, lib/ggrd_handling.h,
+ lib/global_defs.h: Experimental implementation of internal stress
+ or velocity boundary conditions. As of right now, toplayerbc > 0
+ (default = 0) will assign the surface boundary condition to all
+ nodes within the first toplayerbc layers. If BCs are assigned
+ from file, this will only work for the grd method, not the
+ regular file I/O.
+
+2009-11-21 00:15 becker
+
+ * lib/Instructions.c, lib/Stokes_flow_Incomp.c, lib/global_defs.h:
+ Exit criterion for incompressibility iteration allowed for
+ velocity and pressure convergence at finite compressibility >
+ accuracy. Changed criterion to loop while (convergence < 2) OR
+ (compressibility < imp)
+
+ Please review
+
+ Also modified the sloppy iteration branch, where pressure isn't
+ checked.
+
+2009-11-20 21:58 tan2
+
+ * lib/Convection.c, lib/Parsing.c: Clean up #include
+
+2009-11-20 21:58 tan2
+
+ * lib/Material_properties.c: Fixed two minor errors
+
+2009-11-19 23:11 tan2
+
+ * lib/Full_version_dependent.c, lib/Global_operations.c,
+ lib/Instructions.c, lib/Material_properties.c,
+ lib/Regional_version_dependent.c, lib/global_defs.h: Created a
+ new array E->sphere.gr for the radii of all layers. This makes
+ gather_r() obsolete.
+
+2009-11-19 23:09 tan2
+
+ * lib/Viscosity_structures.c, lib/viscosity_descriptions.h:
+ refactor viscosity definition
+
+2009-11-19 23:08 tan2
+
+ * visual/batchcombine.py: 'localhost' can abbr. as '-'
+
+2009-10-14 18:26 becker
+
+ * lib/Instructions.c: Changed defaults for z_410, z_lmantle, z_lith
+ to more Earth like parameters.
+
+ Does this break any tests?
+
+2009-10-13 16:37 becker
+
+ * lib/Ggrd_handling.c: Fixed typo.
+
+2009-10-08 18:01 tan2
+
+ * CitcomS/Components/Visc.py: z_layer needs 4 elements
+
+2009-10-07 04:39 danb
+
+ * CitcomS/Components/Stokes_solver/Incompressible.py: added
+ only_check_vel_convergence to pyre version.
+
+2009-10-06 18:48 becker
+
+ * lib/Full_read_input_from_files.c, lib/Ggrd_handling.c,
+ lib/Instructions.c, lib/Regional_read_input_from_files.c:
+ Modified handling of ggrd_mat_control, > 0 will select all layers
+ above, < 0 will select individual layer == - ggrd_mat_control
+
+2009-10-05 19:06 tan2
+
+ * CitcomS/Components/Sphere/Sphere.py, CitcomS/Components/Visc.py,
+ module/setProperties.c: Add pyre binding of z_layer,
+ r_grid_layers, rr, and nr.
+
+ replace MAX_MAT with CITCOM_MAX_VISC_LAYER.
+
+2009-10-05 19:05 tan2
+
+ * lib/Instructions.c: Refactoring z_layer input validation.
+
+2009-10-05 19:05 tan2
+
+ * lib/Full_tracer_advection.c, lib/Tracer_setup.c: Dealing with
+ tracers that belong to the current processor but cannot find its
+ element.
+
+ When itracer_warning is off, the code will ignore the lost
+ tracers. When itracer_warning is on (default), the code will
+ abort.
+
+2009-10-02 23:16 becker
+
+ * lib/Full_boundary_conditions.c, lib/Ggrd_handling.c,
+ lib/Instructions.c, lib/Regional_boundary_conditions.c:
+ Experimental traction surface BC from grds.
+
+2009-09-28 20:08 tan2
+
+ * CitcomS/Components/Visc.py, lib/Construct_arrays.c,
+ lib/Pan_problem_misc_functions.c, lib/Viscosity_structures.c,
+ lib/viscosity_descriptions.h, module/setProperties.c:
+ visc_layer_control: allowing each radial layer has its own
+ viscosity parameters
+
+ When "visc_layer_control" is true, the file "visc_layer_file" is
+ read in. The format of visc_layer_file:
+
+ param_nameA Aval_1 Aval_2 ... Aval_nel
+
+ param_nameB Bval_1 Bval_2 ... Bval_nel
+
+ . . .
+
+ The first line is assigned to the basal layer (CMB), and the last
+ line to the surface layer. Note that each parameter has nodez-1
+ values.
+
+2009-09-28 20:05 tan2
+
+ * lib/viscosity_descriptions.h: clean up unused viscosity variables
+
+2009-09-28 20:05 tan2
+
+ * lib/Element_calculations.c: Fixed a bug in pseudo free surface,
+ reported by Robert Moucha.
+
+2009-09-28 20:04 tan2
+
+ * lib/Topo_gravity.c: remove duplicating prototype declaration
+
+2009-09-03 17:24 tan2
+
+ * CitcomS/Components/Output.py, CitcomS/Solver/Solver.py,
+ module/bindings.c, module/outputs.c, module/outputs.h,
+ module/setProperties.c: Added pyre binding for write_q_files
+
+2009-09-03 17:24 tan2
+
+ * CitcomS/Solver/CoupledSolver.py: Added a warning message about
+ tracer + coupling
+
+2009-08-25 19:54 becker
+
+ * lib/Stokes_flow_Incomp.c: Forgot one valid check for Uzawa
+ iterations.
+
+2009-08-25 17:31 becker
+
+ * lib/Stokes_flow_Incomp.c: Ensure that Uzawa solver does not
+ converge if low level, MG solver does not yield a valid solution.
+
+2009-08-21 20:32 becker
+
+ * lib/Viscosity_structures.c, lib/viscosity_descriptions.h: test
+ implementation of steady state strain-rate weakending via PDEPV
+ psrw=on parameter.
+
+2009-08-11 17:48 tan2
+
+ * lib/Material_properties.c: Add Murnaghan's integrated linear EoS
+ as reference_state=2
+
+2009-08-11 17:47 tan2
+
+ * lib/Global_operations.c: Add gather_r() to gather all radial
+ coordinates
+
+2009-08-11 17:35 tan2
+
+ * lib/Topo_gravity.c: Adding augmented Lagrangian component of
+ stiffness matrix in cbf topo
+
+2009-08-04 01:45 leif
+
+ * lib/multigrid_kernel.cu: The function collect_terms() turns out
+ to be quite expensive (over 70% according to gprof). Perform it
+ once per level, caching the result.
+
+2009-07-29 20:16 leif
+
+ * lib/multigrid_kernel.cu: Fixed the remaining bug in
+ n_assemble_del2_u(). Glancing at "global_defs.h", I had assumed
+ that VBX, VBY, and VBZ were defined in the natrual way:
+
+ #define VBX 0x2 #define VBY 0x4 #define VBZ 0x8
+
+ I.e., "0x1 << doff"... but today I looked at it more closely; Y &
+ Z are reversed!!!
+
+ #define VBX 0x2 #define VBZ 0x4 #define VBY 0x8
+
+ With this fix, the CUDA multigrid solver seems to work correctly.
+
+2009-07-29 04:05 becker
+
+ * lib/Ggrd_handling.c: Ensure debugging output for ggrd_vtop mixed
+ BC if more than one CPU with depth is used.
+
+ Previous check in of precise_strain_rate=on mode seems to be OK,
+ stress, geoid, and dynamic topo output (for cbf topo off) have
+ been tested.
+
+2009-07-28 01:00 leif
+
+ * lib/multigrid_kernel.cu: Experiments show that using a block size
+ of 1 leads to poor performance. Using the recommended minimum of
+ 64, gauss_seidel_0 and gauss_seidel_1 are about 3x to 4x faster.
+
+2009-07-27 23:44 leif
+
+ * lib/multigrid_kernel.cu: Fixed stupid reduce bug that affected
+ several routines. (This is what I get for coping & pasting
+ example code without thinking.) Now the only remaining broken
+ routine is n_assemble_del2_u().
+
+2009-07-25 02:48 leif
+
+ * lib/multigrid_kernel.cu: Wrote two new versions of
+ gauss_seidel_2() -- neither of which is very parallel. Both
+ produce similar wrong answers.
+
+2009-07-24 01:03 becker
+
+ * lib/Topo_gravity.c: This version of precise strain-rates may now
+ be worth testing out.
+
+2009-07-23 18:40 becker
+
+ * lib/Topo_gravity.c, lib/Viscosity_structures.c: Corrected call to
+ get_ba in Topo_gravity for precise_strain_rate, still testing.
+ Rest should be cosmetic.
+
+2009-07-23 03:50 leif
+
+ * lib/multigrid_kernel.cu: This junk is my effort to understand
+ gauss_seidel_2(). Because of the way E->temp[] is used, it is
+ quite difficult (impossible?) to parallelize. I even wrote code
+ to generate a "dot" graph of the expression tree. Of course, this
+ tree is too big to plot in its entirety. With neq == 2187, the
+ tree has 87479 nodes and is 355 levels deep; each level can have
+ anywhere from a handful to several hundred nodes, with over a
+ thousand nodes in each of the bottommost layers.
+
+2009-07-22 20:17 becker
+
+ * lib/Topo_gravity.c: Tentative check in of stress computation
+ modification such that Eh can take a look of what we're working
+ on.
+
+2009-07-17 21:22 leif
+
+ * lib/multigrid_kernel.cu: Created drop-in, host-side replacements
+ for each of the multigrid kernel functions. After swapping them
+ in/out, it seems n_assemble_del2_u(), gauss_seidel_2(), and
+ gauss_seidel_3() are all buggy :-( Both gauss_seidel_0() and
+ gauss_seidel_1() appear to be OK... but that isn't worth writing
+ home about, because they are both trivial.
+
+2009-07-16 03:13 leif
+
+ * lib/multigrid_kernel.cu: New scaffolding with annotations.
+
+2009-07-16 00:49 leif
+
+ * lib/multigrid_kernel.cu: Bug fixes... still doesn't work right.
+
+2009-07-15 21:54 leif
+
+ * lib/multigrid_kernel.cu: Wrote code to allocate & initialize
+ device memory, and copy the result from the device.
+
+2009-07-15 01:58 leif
+
+ * lib/multigrid_kernel.cu: Parallelized the last fragment of the
+ gauss_seidel() main loop as gauss_seidel_3(). It turns out to be
+ very similar to the second half of n_assemble_del2_u(). Tore down
+ scaffolding.
+
+2009-07-15 00:14 leif
+
+ * lib/multigrid_kernel.cu: Parallel n_assemble_del2_u() takes
+ shape.
+
+2009-07-10 22:15 leif
+
+ * lib/multigrid_kernel.cu: Pardon my dust...
+ tally_n_assemble_del2_u() is instrumention and printfs I wrote in
+ order to understand n_assemble_del2_u(). As with
+ e_assemble_del2_u(), it appears I need one block for each Au[i]
+ element, with a reduction in shared memory.
+
+2009-07-10 21:08 danb
+
+ * lib/Process_buoyancy.c: include density (rho) scaling in
+ convective heat flux (necessary for compressible flow)
+
+2009-07-09 20:40 danb
+
+ * lib/Regional_read_input_from_files.c: Second material element
+ file only read in and processed when (pos_age) criteria met (i.e.
+ consistent with vel b.c. approach).
+
+2009-07-09 17:27 becker
+
+ * lib/Instructions.c: Only one processor complains about removing
+ rigid rotations while prescribing plate motions.
+
+2009-07-06 22:13 leif
+
+ * lib/General_matrix_functions.c, lib/cgrad_kernel.cu,
+ lib/multigrid_kernel.cu: Make sure "-arch sm_13" is given -- for
+ double-precision floating-point. Added missing #ifndef USE_CUDA.
+
+2009-07-02 18:41 leif
+
+ * lib/multigrid_kernel.cu: Sketched data-parallel version of
+ gauss_seidel(). I haven't figured out how to parallelize the
+ following:
+
+ Au[C[i]] += ... Ad[C[j]] += ...
+
+2009-07-01 19:09 leif
+
+ * lib/General_matrix_functions.c, lib/cgrad_kernel.cu,
+ lib/multigrid_kernel.cu: Fixed a pair of mistakes I made: under
+ cgrad, don't replace solve_del2_u(); under multigrid, 'level' is
+ not a constant.
+
+2009-06-30 22:33 leif
+
+ * lib/multigrid_kernel.cu: The 'temp1' array is unnecessary since
+ nproc == 1.
+
+2009-06-29 22:10 leif
+
+ * lib/multigrid_kernel.cu: For my own sanity, simplified code
+ assuming the following:
+
+ E->sphere.caps_per_proc == 1 E->parallel.nproc == 1
+ E->mesh.levmax == 0 E->mesh.nsd == 3
+
+2009-06-29 20:18 leif
+
+ * lib/General_matrix_functions.c, lib/Makefile.am,
+ lib/multigrid_kernel.cu: Proposed CUDA kernel for multigrid
+ solver.
+
+2009-06-25 16:51 tan2
+
+ * examples/Cookbook10/cmt-solution.cookbook10,
+ examples/Cookbook10/stations.cookbook10: forgot to add these
+ files
+
+2009-06-15 18:21 tan2
+
+ * ChangeLog: Update ChangeLog to r15180
+
2009-06-10 20:42 tan2
* configure.ac: Added COND_GGRD flags; removed redundant LIBS
@@ -2037,8 +2927,7 @@
2007-08-29 23:18 tan2
- * doc/CitcomS, doc: Restructing the repository layout for CitcomS
- documentation
+ * doc: Restructing the repository layout for CitcomS documentation
2007-08-29 20:55 tan2
@@ -6806,21 +7695,7 @@
2005-10-29 02:16 leif
- * mc/3D/CitcomS/branches/v2/examples/Cookbook1/cookbook1.sh,
- mc/3D/CitcomS/branches/v2/examples/Cookbook2/cookbook2.sh,
- mc/3D/CitcomS/branches/v2/examples/Cookbook3/cookbook3.sh,
- mc/3D/CitcomS/branches/v2/examples/Cookbook4/cookbook4.sh,
- mc/3D/CitcomS/branches/v2/examples/Cookbook5/cookbook5.sh,
- mc/3D/CitcomS/branches/v2/examples/Cookbook7/cookbook7.sh,
- mc/3D/CitcomS/branches/v2/examples/example1.sh,
- mc/3D/CitcomS/tags/v2.0.1/examples/Cookbook1/cookbook1.sh,
- mc/3D/CitcomS/tags/v2.0.1/examples/Cookbook2/cookbook2.sh,
- mc/3D/CitcomS/tags/v2.0.1/examples/Cookbook3/cookbook3.sh,
- mc/3D/CitcomS/tags/v2.0.1/examples/Cookbook4/cookbook4.sh,
- mc/3D/CitcomS/tags/v2.0.1/examples/Cookbook5/cookbook5.sh,
- mc/3D/CitcomS/tags/v2.0.1/examples/Cookbook7/cookbook7.sh,
- mc/3D/CitcomS/tags/v2.0.1/examples/example1.sh,
- examples/Cookbook1/cookbook1.sh, examples/Cookbook2/cookbook2.sh:
+ * examples/Cookbook1/cookbook1.sh, examples/Cookbook2/cookbook2.sh:
Set svn:executable on all examples and cookbooks.
2005-10-29 02:07 leif
@@ -6849,39 +7724,7 @@
2005-10-21 19:35 leif
- * mc/3D/CitcomS/branches/v2/examples/Cookbook1/cookbook1.sh,
- mc/3D/CitcomS/branches/v2/examples/Cookbook2/cookbook2.sh,
- mc/3D/CitcomS/branches/v2/examples/Cookbook3/cookbook3.sh,
- mc/3D/CitcomS/branches/v2/examples/Cookbook4/cookbook4.sh,
- mc/3D/CitcomS/branches/v2/examples/Cookbook5/cookbook5.sh,
- mc/3D/CitcomS/branches/v2/examples/Cookbook7/cookbook7.sh,
- mc/3D/CitcomS/branches/v2/examples/example1.sh,
- mc/3D/CitcomS/branches/v2/visual/Makefile.am,
- mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSFullImport.net,
- mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSFullImport.net.in,
- mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSImport.net,
- mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSImport.net.in,
- mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSSurfaceHeatflux.net,
- mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSSurfaceHeatflux.net.in,
- mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSSurfaceImport.net,
- mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSSurfaceImport.net.in,
- mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSSurfaceTopo.net,
- mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSSurfaceTopo.net.in,
- mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSSurfaceVelocity.net,
- mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSSurfaceVelocity.net.in,
- mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSTemperature.net,
- mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSTemperature.net.in,
- mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSVelocity.net,
- mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSVelocity.net.in,
- mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSViscosity.net,
- mc/3D/CitcomS/branches/v2/visual/OpenDXMacro/CitcomSViscosity.net.in,
- mc/3D/CitcomS/branches/v2/visual/visFull.net,
- mc/3D/CitcomS/branches/v2/visual/visFull.net.in,
- mc/3D/CitcomS/branches/v2/visual/visRegional.net,
- mc/3D/CitcomS/branches/v2/visual/visRegional.net.in,
- mc/3D/CitcomS/branches/v2/visual/visRegionalSurface.net,
- mc/3D/CitcomS/branches/v2/visual/visRegionalSurface.net.in,
- examples/Cookbook1/cookbook1.sh, examples/Cookbook2/cookbook2.sh,
+ * examples/Cookbook1/cookbook1.sh, examples/Cookbook2/cookbook2.sh,
examples/Cookbook3/cookbook3.sh, examples/Cookbook4/cookbook4.sh,
examples/Cookbook5/cookbook5.sh, examples/Cookbook7/cookbook7.sh,
examples/example1.sh, visual/Makefile.am,
@@ -6910,9 +7753,7 @@
2005-10-07 12:37 leif
- * mc/3D/CitcomS/branches/v2/pyre/Solver/FullSolver.py,
- mc/3D/CitcomS/branches/v2/pyre/Solver/RegionalSolver.py,
- pyre/Solver/FullSolver.py, pyre/Solver/RegionalSolver.py: Don't
+ * pyre/Solver/FullSolver.py, pyre/Solver/RegionalSolver.py: Don't
suppress errors loading Full/Regional module.
2005-10-04 23:58 tan2
@@ -6928,216 +7769,12 @@
2005-10-04 22:37 leif
- * mc/3D/CitcomS/branches/v2/Make.mm,
- mc/3D/CitcomS/branches/v2/Makefile.am,
- mc/3D/CitcomS/branches/v2/configure.ac,
- mc/3D/CitcomS/branches/v2/drivers/Citcom.c,
- mc/3D/CitcomS/branches/v2/drivers/Full/Make.mm,
- mc/3D/CitcomS/branches/v2/drivers/Full/local.def,
- mc/3D/CitcomS/branches/v2/drivers/Make.mm,
- mc/3D/CitcomS/branches/v2/drivers/Makefile.am,
- mc/3D/CitcomS/branches/v2/drivers/Regional/Make.mm,
- mc/3D/CitcomS/branches/v2/drivers/Regional/local.def,
- mc/3D/CitcomS/branches/v2/drivers/local.def,
- mc/3D/CitcomS/branches/v2/etc/Make.mm,
- mc/3D/CitcomS/branches/v2/etc/Makefile.am,
- mc/3D/CitcomS/branches/v2/etc/__vault__.odb,
- mc/3D/CitcomS/branches/v2/etc/full-sphere.odb,
- mc/3D/CitcomS/branches/v2/etc/full.odb,
- mc/3D/CitcomS/branches/v2/etc/globus.odb,
- mc/3D/CitcomS/branches/v2/etc/incomp-newtonian.odb,
- mc/3D/CitcomS/branches/v2/etc/incomp-non-newtonian.odb,
- mc/3D/CitcomS/branches/v2/etc/lam-mpi.odb,
- mc/3D/CitcomS/branches/v2/etc/lsf.odb,
- mc/3D/CitcomS/branches/v2/etc/mpich.odb,
- mc/3D/CitcomS/branches/v2/etc/pbs.odb,
- mc/3D/CitcomS/branches/v2/etc/regional-sphere.odb,
- mc/3D/CitcomS/branches/v2/etc/regional.odb,
- mc/3D/CitcomS/branches/v2/etc/temp.odb,
- mc/3D/CitcomS/branches/v2/examples/Cookbook1/cookbook1.sh,
- mc/3D/CitcomS/branches/v2/examples/Cookbook2/cookbook2.sh,
- mc/3D/CitcomS/branches/v2/examples/Cookbook3/cookbook3.sh,
- mc/3D/CitcomS/branches/v2/examples/Cookbook4/cookbook4.sh,
- mc/3D/CitcomS/branches/v2/examples/Cookbook5/cookbook5.sh,
- mc/3D/CitcomS/branches/v2/examples/Cookbook7/cookbook7.sh,
- mc/3D/CitcomS/branches/v2/examples/Makefile.am,
- mc/3D/CitcomS/branches/v2/examples/example1.sh,
- mc/3D/CitcomS/branches/v2/lib/Common/Advection_diffusion.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Citcom_init.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Construct_arrays.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Convection.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Drive_solvers.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Element_calculations.c,
- mc/3D/CitcomS/branches/v2/lib/Common/General_matrix_functions.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Global_operations.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Initial_temperature.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Instructions.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Interuption.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Make.mm,
- mc/3D/CitcomS/branches/v2/lib/Common/Makefile.am,
- mc/3D/CitcomS/branches/v2/lib/Common/Nodal_mesh.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Obsolete.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Output.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Pan_problem_misc_functions.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Parsing.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Phase_change.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Problem_related.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Process_buoyancy.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Shape_functions.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Size_does_matter.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Solver_conj_grad.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Solver_multigrid.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Sphere_harmonics.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Stokes_flow_Incomp.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Topo_gravity.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Tracer_advection.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Viscosity_structures.c,
- mc/3D/CitcomS/branches/v2/lib/Common/advection.h,
- mc/3D/CitcomS/branches/v2/lib/Common/advection_diffusion.h,
- mc/3D/CitcomS/branches/v2/lib/Common/citcom_init.h,
- mc/3D/CitcomS/branches/v2/lib/Common/convection_variables.h,
- mc/3D/CitcomS/branches/v2/lib/Common/drive_solvers.h,
- mc/3D/CitcomS/branches/v2/lib/Common/element_definitions.h,
- mc/3D/CitcomS/branches/v2/lib/Common/global_defs.h,
- mc/3D/CitcomS/branches/v2/lib/Common/initial_temperature.h,
- mc/3D/CitcomS/branches/v2/lib/Common/interuption.h,
- mc/3D/CitcomS/branches/v2/lib/Common/lith_age.h,
- mc/3D/CitcomS/branches/v2/lib/Common/local.def,
- mc/3D/CitcomS/branches/v2/lib/Common/output.h,
- mc/3D/CitcomS/branches/v2/lib/Common/parallel_related.h,
- mc/3D/CitcomS/branches/v2/lib/Common/parsing.h,
- mc/3D/CitcomS/branches/v2/lib/Common/phase_change.h,
- mc/3D/CitcomS/branches/v2/lib/Common/sphere_communication.h,
- mc/3D/CitcomS/branches/v2/lib/Common/temperature_descriptions.h,
- mc/3D/CitcomS/branches/v2/lib/Common/tracer_defs.h,
- mc/3D/CitcomS/branches/v2/lib/Common/viscosity_descriptions.h,
- mc/3D/CitcomS/branches/v2/lib/Full/Boundary_conditions.c,
- mc/3D/CitcomS/branches/v2/lib/Full/Geometry_cartesian.c,
- mc/3D/CitcomS/branches/v2/lib/Full/Lith_age.c,
- mc/3D/CitcomS/branches/v2/lib/Full/Make.mm,
- mc/3D/CitcomS/branches/v2/lib/Full/Makefile.am,
- mc/3D/CitcomS/branches/v2/lib/Full/Obsolete.c,
- mc/3D/CitcomS/branches/v2/lib/Full/Parallel_related.c,
- mc/3D/CitcomS/branches/v2/lib/Full/Read_input_from_files.c,
- mc/3D/CitcomS/branches/v2/lib/Full/Sphere_related.c,
- mc/3D/CitcomS/branches/v2/lib/Full/Version_dependent.c,
- mc/3D/CitcomS/branches/v2/lib/Full/local.def,
- mc/3D/CitcomS/branches/v2/lib/Make.mm,
- mc/3D/CitcomS/branches/v2/lib/Makefile.am,
- mc/3D/CitcomS/branches/v2/lib/Regional/Boundary_conditions.c,
- mc/3D/CitcomS/branches/v2/lib/Regional/Geometry_cartesian.c,
- mc/3D/CitcomS/branches/v2/lib/Regional/Lith_age.c,
- mc/3D/CitcomS/branches/v2/lib/Regional/Make.mm,
- mc/3D/CitcomS/branches/v2/lib/Regional/Makefile.am,
- mc/3D/CitcomS/branches/v2/lib/Regional/Obsolete.c,
- mc/3D/CitcomS/branches/v2/lib/Regional/Parallel_related.c,
- mc/3D/CitcomS/branches/v2/lib/Regional/Read_input_from_files.c,
- mc/3D/CitcomS/branches/v2/lib/Regional/Sphere_related.c,
- mc/3D/CitcomS/branches/v2/lib/Regional/Version_dependent.c,
- mc/3D/CitcomS/branches/v2/lib/Regional/local.def,
- mc/3D/CitcomS/branches/v2/lib/local.def,
- mc/3D/CitcomS/branches/v2/local.def,
- mc/3D/CitcomS/branches/v2/module/Full/Fullmodule.cc,
- mc/3D/CitcomS/branches/v2/module/Full/Make.mm,
- mc/3D/CitcomS/branches/v2/module/Full/Makefile.am,
- mc/3D/CitcomS/branches/v2/module/Full/local.def,
- mc/3D/CitcomS/branches/v2/module/Make.mm,
- mc/3D/CitcomS/branches/v2/module/Makefile.am,
- mc/3D/CitcomS/branches/v2/module/Regional/Make.mm,
- mc/3D/CitcomS/branches/v2/module/Regional/Makefile.am,
- mc/3D/CitcomS/branches/v2/module/Regional/Regionalmodule.cc,
- mc/3D/CitcomS/branches/v2/module/Regional/advdiffu.cc,
- mc/3D/CitcomS/branches/v2/module/Regional/advdiffu.h,
- mc/3D/CitcomS/branches/v2/module/Regional/bindings.cc,
- mc/3D/CitcomS/branches/v2/module/Regional/bindings.h,
- mc/3D/CitcomS/branches/v2/module/Regional/exceptions.cc,
- mc/3D/CitcomS/branches/v2/module/Regional/exceptions.h,
- mc/3D/CitcomS/branches/v2/module/Regional/initial_conditions.cc,
- mc/3D/CitcomS/branches/v2/module/Regional/initial_conditions.h,
- mc/3D/CitcomS/branches/v2/module/Regional/local.def,
- mc/3D/CitcomS/branches/v2/module/Regional/mesher.cc,
- mc/3D/CitcomS/branches/v2/module/Regional/mesher.h,
- mc/3D/CitcomS/branches/v2/module/Regional/misc.cc,
- mc/3D/CitcomS/branches/v2/module/Regional/misc.h,
- mc/3D/CitcomS/branches/v2/module/Regional/outputs.cc,
- mc/3D/CitcomS/branches/v2/module/Regional/outputs.h,
- mc/3D/CitcomS/branches/v2/module/Regional/setProperties.cc,
- mc/3D/CitcomS/branches/v2/module/Regional/setProperties.h,
- mc/3D/CitcomS/branches/v2/module/Regional/stokes_solver.cc,
- mc/3D/CitcomS/branches/v2/module/Regional/stokes_solver.h,
- mc/3D/CitcomS/branches/v2/pyre/Components/Advection_diffusion/Advection_diffusion.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Advection_diffusion/Make.mm,
- mc/3D/CitcomS/branches/v2/pyre/Components/Advection_diffusion/__init__.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/BC.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/CitcomComponent.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Const.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/CoarseGridExchanger.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/Exchanger.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/FineGridExchanger.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/Inlet.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/Make.mm,
- mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/Outlet.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/__init__.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/IC.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Launchers.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Make.mm,
- mc/3D/CitcomS/branches/v2/pyre/Components/Param.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Phase.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Sphere/FullSphere.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Sphere/Make.mm,
- mc/3D/CitcomS/branches/v2/pyre/Components/Sphere/RegionalSphere.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Sphere/Sphere.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Sphere/__init__.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Stokes_solver/Incompressible.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Stokes_solver/Make.mm,
- mc/3D/CitcomS/branches/v2/pyre/Components/Stokes_solver/__init__.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Tracer.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Visc.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/__init__.py,
- mc/3D/CitcomS/branches/v2/pyre/Controller.py,
- mc/3D/CitcomS/branches/v2/pyre/CoupledApp.py,
- mc/3D/CitcomS/branches/v2/pyre/Coupler.py,
- mc/3D/CitcomS/branches/v2/pyre/Layout.py,
- mc/3D/CitcomS/branches/v2/pyre/Make.mm,
- mc/3D/CitcomS/branches/v2/pyre/Makefile.am,
- mc/3D/CitcomS/branches/v2/pyre/SimpleApp.py,
- mc/3D/CitcomS/branches/v2/pyre/Solver/FullSolver.py,
- mc/3D/CitcomS/branches/v2/pyre/Solver/Make.mm,
- mc/3D/CitcomS/branches/v2/pyre/Solver/RegionalSolver.py,
- mc/3D/CitcomS/branches/v2/pyre/Solver/Solver.py,
- mc/3D/CitcomS/branches/v2/pyre/Solver/__init__.py,
- mc/3D/CitcomS/branches/v2/pyre/__init__.py.in,
- mc/3D/CitcomS/branches/v2/pyre/local.def,
- mc/3D/CitcomS/branches/v2/tests/Make.mm,
- mc/3D/CitcomS/branches/v2/tests/Makefile.am,
- mc/3D/CitcomS/branches/v2/tests/asap.py,
- mc/3D/CitcomS/branches/v2/tests/citcomsfull.sh.in,
- mc/3D/CitcomS/branches/v2/tests/citcomsregional.sh.in,
- mc/3D/CitcomS/branches/v2/tests/hrothgar.py,
- mc/3D/CitcomS/branches/v2/tests/local.def,
- mc/3D/CitcomS/branches/v2/tests/signon.py,
- mc/3D/CitcomS/branches/v2/visual/Make.mm,
- mc/3D/CitcomS/branches/v2/visual/Makefile.am,
- mc/3D/CitcomS/branches/v2/visual/autocombine.py,
- mc/3D/CitcomS/branches/v2/visual/batchcombine.py,
- mc/3D/CitcomS/branches/v2/visual/batchpaste.sh,
- mc/3D/CitcomS/branches/v2/visual/batchsurf.py,
- mc/3D/CitcomS/branches/v2/visual/combine.py,
- mc/3D/CitcomS/branches/v2/visual/combinesurf.py,
- mc/3D/CitcomS/branches/v2/visual/dxgeneral.sh,
- mc/3D/CitcomS/branches/v2/visual/dxgeneralsurf.sh,
- mc/3D/CitcomS/branches/v2/visual/getcoord.sh,
- mc/3D/CitcomS/branches/v2/visual/getlog.sh,
- mc/3D/CitcomS/branches/v2/visual/getsurf.sh,
- mc/3D/CitcomS/branches/v2/visual/parser.py,
- mc/3D/CitcomS/branches/v2/visual/pasteCitcomData.sh,
- mc/3D/CitcomS/branches/v2/visual/zslice.py, Make.mm, Makefile.am,
- configure.ac, drivers/Citcom.c, drivers/Full/Make.mm,
- drivers/Full/local.def, drivers/Make.mm, drivers/Makefile.am,
- drivers/Regional/Make.mm, drivers/Regional/local.def,
- drivers/local.def, etc/Make.mm, etc/Makefile.am,
- etc/__vault__.odb, etc/full-sphere.odb, etc/full.odb,
- etc/globus.odb, etc/incomp-newtonian.odb,
+ * Make.mm, Makefile.am, configure.ac, drivers/Citcom.c,
+ drivers/Full/Make.mm, drivers/Full/local.def, drivers/Make.mm,
+ drivers/Makefile.am, drivers/Regional/Make.mm,
+ drivers/Regional/local.def, drivers/local.def, etc/Make.mm,
+ etc/Makefile.am, etc/__vault__.odb, etc/full-sphere.odb,
+ etc/full.odb, etc/globus.odb, etc/incomp-newtonian.odb,
etc/incomp-non-newtonian.odb, etc/lam-mpi.odb, etc/lsf.odb,
etc/mpich.odb, etc/pbs.odb, etc/regional-sphere.odb,
etc/regional.odb, etc/temp.odb, examples/Cookbook1/cookbook1.sh,
@@ -7273,168 +7910,8 @@
2005-10-04 02:53 leif
- * mc/3D/CitcomS/branches/v2/AUTHORS,
- mc/3D/CitcomS/branches/v2/COPYING,
- mc/3D/CitcomS/branches/v2/ChangeLog,
- mc/3D/CitcomS/branches/v2/CitcomS.py-LICENSE.txt,
- mc/3D/CitcomS/branches/v2/INSTALL,
- mc/3D/CitcomS/branches/v2/Make.mm,
- mc/3D/CitcomS/branches/v2/Makefile.am,
- mc/3D/CitcomS/branches/v2/NEWS, mc/3D/CitcomS/branches/v2/README,
- mc/3D/CitcomS/branches/v2/citcoms_profile,
- mc/3D/CitcomS/branches/v2/configure.ac,
- mc/3D/CitcomS/branches/v2/drivers/Full/Make.mm,
- mc/3D/CitcomS/branches/v2/drivers/Full/local.def,
- mc/3D/CitcomS/branches/v2/drivers/Make.mm,
- mc/3D/CitcomS/branches/v2/drivers/Makefile.am,
- mc/3D/CitcomS/branches/v2/drivers/Regional/Make.mm,
- mc/3D/CitcomS/branches/v2/drivers/Regional/local.def,
- mc/3D/CitcomS/branches/v2/drivers/local.def,
- mc/3D/CitcomS/branches/v2/etc/CitcomS.pml.in,
- mc/3D/CitcomS/branches/v2/etc/Make.mm,
- mc/3D/CitcomS/branches/v2/etc/Makefile.am,
- mc/3D/CitcomS/branches/v2/etc/__vault__.odb,
- mc/3D/CitcomS/branches/v2/etc/full-sphere.odb,
- mc/3D/CitcomS/branches/v2/etc/full.odb,
- mc/3D/CitcomS/branches/v2/etc/globus.odb,
- mc/3D/CitcomS/branches/v2/etc/incomp-newtonian.odb,
- mc/3D/CitcomS/branches/v2/etc/incomp-non-newtonian.odb,
- mc/3D/CitcomS/branches/v2/etc/lam-mpi.odb,
- mc/3D/CitcomS/branches/v2/etc/lsf.odb,
- mc/3D/CitcomS/branches/v2/etc/mpich.odb,
- mc/3D/CitcomS/branches/v2/etc/pbs.odb,
- mc/3D/CitcomS/branches/v2/etc/regional-sphere.odb,
- mc/3D/CitcomS/branches/v2/etc/regional.odb,
- mc/3D/CitcomS/branches/v2/etc/temp.odb,
- mc/3D/CitcomS/branches/v2/examples/Cookbook2/cookbook2.sh,
- mc/3D/CitcomS/branches/v2/examples/Cookbook3/cookbook3.sh,
- mc/3D/CitcomS/branches/v2/examples/Cookbook4/cookbook4.sh,
- mc/3D/CitcomS/branches/v2/examples/Cookbook5/cookbook5.sh,
- mc/3D/CitcomS/branches/v2/examples/Makefile.am,
- mc/3D/CitcomS/branches/v2/examples/example1.sh,
- mc/3D/CitcomS/branches/v2/lib/Common/Element_calculations.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Make.mm,
- mc/3D/CitcomS/branches/v2/lib/Common/Makefile.am,
- mc/3D/CitcomS/branches/v2/lib/Common/Obsolete.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Pan_problem_misc_functions.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Size_does_matter.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Topo_gravity.c,
- mc/3D/CitcomS/branches/v2/lib/Common/Tracer_advection.c,
- mc/3D/CitcomS/branches/v2/lib/Common/advection_diffusion.h,
- mc/3D/CitcomS/branches/v2/lib/Common/citcom_init.h,
- mc/3D/CitcomS/branches/v2/lib/Common/drive_solvers.h,
- mc/3D/CitcomS/branches/v2/lib/Common/global_defs.h,
- mc/3D/CitcomS/branches/v2/lib/Common/local.def,
- mc/3D/CitcomS/branches/v2/lib/Common/output.h,
- mc/3D/CitcomS/branches/v2/lib/Common/parallel_related.h,
- mc/3D/CitcomS/branches/v2/lib/Full/Boundary_conditions.c,
- mc/3D/CitcomS/branches/v2/lib/Full/Make.mm,
- mc/3D/CitcomS/branches/v2/lib/Full/Makefile.am,
- mc/3D/CitcomS/branches/v2/lib/Full/local.def,
- mc/3D/CitcomS/branches/v2/lib/Make.mm,
- mc/3D/CitcomS/branches/v2/lib/Makefile.am,
- mc/3D/CitcomS/branches/v2/lib/Regional/Boundary_conditions.c,
- mc/3D/CitcomS/branches/v2/lib/Regional/Make.mm,
- mc/3D/CitcomS/branches/v2/lib/Regional/Makefile.am,
- mc/3D/CitcomS/branches/v2/lib/Regional/local.def,
- mc/3D/CitcomS/branches/v2/lib/local.def,
- mc/3D/CitcomS/branches/v2/local.def,
- mc/3D/CitcomS/branches/v2/module/Full/Fullmodule.cc,
- mc/3D/CitcomS/branches/v2/module/Full/Make.mm,
- mc/3D/CitcomS/branches/v2/module/Full/Makefile.am,
- mc/3D/CitcomS/branches/v2/module/Full/local.def,
- mc/3D/CitcomS/branches/v2/module/Make.mm,
- mc/3D/CitcomS/branches/v2/module/Makefile.am,
- mc/3D/CitcomS/branches/v2/module/Regional/Make.mm,
- mc/3D/CitcomS/branches/v2/module/Regional/Makefile.am,
- mc/3D/CitcomS/branches/v2/module/Regional/Regionalmodule.cc,
- mc/3D/CitcomS/branches/v2/module/Regional/advdiffu.cc,
- mc/3D/CitcomS/branches/v2/module/Regional/advdiffu.h,
- mc/3D/CitcomS/branches/v2/module/Regional/bindings.cc,
- mc/3D/CitcomS/branches/v2/module/Regional/bindings.h,
- mc/3D/CitcomS/branches/v2/module/Regional/exceptions.cc,
- mc/3D/CitcomS/branches/v2/module/Regional/exceptions.h,
- mc/3D/CitcomS/branches/v2/module/Regional/initial_conditions.cc,
- mc/3D/CitcomS/branches/v2/module/Regional/initial_conditions.h,
- mc/3D/CitcomS/branches/v2/module/Regional/local.def,
- mc/3D/CitcomS/branches/v2/module/Regional/mesher.cc,
- mc/3D/CitcomS/branches/v2/module/Regional/mesher.h,
- mc/3D/CitcomS/branches/v2/module/Regional/misc.cc,
- mc/3D/CitcomS/branches/v2/module/Regional/misc.h,
- mc/3D/CitcomS/branches/v2/module/Regional/outputs.cc,
- mc/3D/CitcomS/branches/v2/module/Regional/outputs.h,
- mc/3D/CitcomS/branches/v2/module/Regional/setProperties.cc,
- mc/3D/CitcomS/branches/v2/module/Regional/setProperties.h,
- mc/3D/CitcomS/branches/v2/module/Regional/stokes_solver.cc,
- mc/3D/CitcomS/branches/v2/module/Regional/stokes_solver.h,
- mc/3D/CitcomS/branches/v2/pyre/Components/Advection_diffusion/Advection_diffusion.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Advection_diffusion/Make.mm,
- mc/3D/CitcomS/branches/v2/pyre/Components/Advection_diffusion/__init__.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/BC.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/CitcomComponent.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Const.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/CoarseGridExchanger.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/Exchanger.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/FineGridExchanger.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/Inlet.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/Make.mm,
- mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/Outlet.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Exchanger/__init__.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/IC.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Launchers.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Make.mm,
- mc/3D/CitcomS/branches/v2/pyre/Components/Param.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Phase.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Sphere/FullSphere.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Sphere/Make.mm,
- mc/3D/CitcomS/branches/v2/pyre/Components/Sphere/RegionalSphere.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Sphere/Sphere.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Sphere/__init__.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Stokes_solver/Incompressible.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Stokes_solver/Make.mm,
- mc/3D/CitcomS/branches/v2/pyre/Components/Stokes_solver/__init__.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Tracer.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/Visc.py,
- mc/3D/CitcomS/branches/v2/pyre/Components/__init__.py,
- mc/3D/CitcomS/branches/v2/pyre/CoupledApp.py,
- mc/3D/CitcomS/branches/v2/pyre/Coupler.py,
- mc/3D/CitcomS/branches/v2/pyre/Layout.py,
- mc/3D/CitcomS/branches/v2/pyre/Make.mm,
- mc/3D/CitcomS/branches/v2/pyre/Makefile.am,
- mc/3D/CitcomS/branches/v2/pyre/SimpleApp.py,
- mc/3D/CitcomS/branches/v2/pyre/Solver/FullSolver.py,
- mc/3D/CitcomS/branches/v2/pyre/Solver/Make.mm,
- mc/3D/CitcomS/branches/v2/pyre/Solver/RegionalSolver.py,
- mc/3D/CitcomS/branches/v2/pyre/Solver/Solver.py,
- mc/3D/CitcomS/branches/v2/pyre/Solver/__init__.py,
- mc/3D/CitcomS/branches/v2/pyre/__init__.py,
- mc/3D/CitcomS/branches/v2/pyre/__init__.py.in,
- mc/3D/CitcomS/branches/v2/pyre/local.def,
- mc/3D/CitcomS/branches/v2/tests/Make.mm,
- mc/3D/CitcomS/branches/v2/tests/Makefile.am,
- mc/3D/CitcomS/branches/v2/tests/asap.py,
- mc/3D/CitcomS/branches/v2/tests/citcomsfull.sh,
- mc/3D/CitcomS/branches/v2/tests/citcomsfull.sh.in,
- mc/3D/CitcomS/branches/v2/tests/citcomsregional.sh,
- mc/3D/CitcomS/branches/v2/tests/citcomsregional.sh.in,
- mc/3D/CitcomS/branches/v2/tests/hrothgar.py,
- mc/3D/CitcomS/branches/v2/tests/local.def,
- mc/3D/CitcomS/branches/v2/tests/signon.py,
- mc/3D/CitcomS/branches/v2/visual/Make.mm,
- mc/3D/CitcomS/branches/v2/visual/Makefile.am,
- mc/3D/CitcomS/branches/v2/visual/batchcombine.py,
- mc/3D/CitcomS/branches/v2/visual/batchpaste.sh,
- mc/3D/CitcomS/branches/v2/visual/batchsurf.py,
- mc/3D/CitcomS/branches/v2/visual/combine.py,
- mc/3D/CitcomS/branches/v2/visual/combinesurf.py,
- mc/3D/CitcomS/branches/v2/visual/dxgeneral.sh,
- mc/3D/CitcomS/branches/v2/visual/dxgeneralsurf.sh,
- mc/3D/CitcomS/branches/v2/visual/getcoord.sh,
- mc/3D/CitcomS/branches/v2/visual/getlog.sh,
- mc/3D/CitcomS/branches/v2/visual/getsurf.sh,
- mc/3D/CitcomS/branches/v2/visual/pasteCitcomData.sh, Makefile.am,
- tests/Make.mm: Ported GNU Build System from CitcomS trunk to v2
- branch.
+ * Makefile.am, tests/Make.mm: Ported GNU Build System from CitcomS
+ trunk to v2 branch.
2005-10-04 00:34 leif
@@ -13612,5 +14089,5 @@
2005-08-23 02:42 VCP
- * mc/3D/CitcomS/branches, .: VCP: initializing layout
+ * .: VCP: initializing layout
Modified: mc/3D/CitcomS/trunk/configure.ac
===================================================================
--- mc/3D/CitcomS/trunk/configure.ac 2012-02-01 20:02:16 UTC (rev 19554)
+++ mc/3D/CitcomS/trunk/configure.ac 2012-02-01 21:11:35 UTC (rev 19555)
@@ -25,7 +25,7 @@
# $Id$
AC_PREREQ(2.59)
-AC_INIT([CitcomS], [3.1.0], [cig-mc at geodynamics.org], [CitcomS])
+AC_INIT([CitcomS], [3.1.2], [cig-mc at geodynamics.org], [CitcomS])
AC_CONFIG_AUX_DIR([./aux-config])
AC_CONFIG_SRCDIR([bin/Citcom.c])
AC_CONFIG_HEADER([config.h])
@@ -37,9 +37,9 @@
AC_ARG_VAR(PYTHONPATH, [Python module search path])
AC_ARG_WITH([pyre],
[AC_HELP_STRING([--with-pyre],
- [build Pyre modules @<:@default=yes@:>@])],
+ [build Pyre modules @<:@default=no@:>@])],
[want_pyre="$withval"],
- [want_pyre=yes])
+ [want_pyre=no])
AM_CONDITIONAL([COND_PYRE], [test "$want_pyre" = yes])
AC_ARG_ENABLE([embedding],
[AC_HELP_STRING([--enable-embedding],
Added: mc/3D/CitcomS/trunk/examples/README
===================================================================
--- mc/3D/CitcomS/trunk/examples/README (rev 0)
+++ mc/3D/CitcomS/trunk/examples/README 2012-02-01 21:11:35 UTC (rev 19555)
@@ -0,0 +1,8 @@
+Note regarding examples:
+
+The Cookbook examples in this directory are designed for the Pyre enabled
+version of CitcomS ("./configure --with-pyre"). In the current version of
+CitcomS, Pyre is disabled by default. If you want to use the Cookbook
+examples you must configure CitcomS with Pyre enabled. Otherwise, you can
+use the Regional and Full examples in this directory with Pyre disabled.
+
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