[cig-commits] r19626 - in seismo/3D/FAULT_SOURCE/branches/new_fault_db: . utils

[ampuero at geodynamics.org]

Author: ampuero
Date: 2012-02-14 12:16:57 -0800 (Tue, 14 Feb 2012)
New Revision: 19626

Added:
   seismo/3D/FAULT_SOURCE/branches/new_fault_db/utils/go_mesher
   seismo/3D/FAULT_SOURCE/branches/new_fault_db/utils/go_solver
Modified:
   seismo/3D/FAULT_SOURCE/branches/new_fault_db/README_SPECFEM3D_FAULT
Log:
fram scripts

Modified: seismo/3D/FAULT_SOURCE/branches/new_fault_db/README_SPECFEM3D_FAULT
===================================================================
--- seismo/3D/FAULT_SOURCE/branches/new_fault_db/README_SPECFEM3D_FAULT	2012-02-14 18:11:54 UTC (rev 19625)
+++ seismo/3D/FAULT_SOURCE/branches/new_fault_db/README_SPECFEM3D_FAULT	2012-02-14 20:16:57 UTC (rev 19626)
@@ -25,17 +25,25 @@
 	Post-processing and visualization
 	Running on Fram (the Caltech GPS cluster)
 
-0. DOWNLOAD
---------
 
-Download the package with the following Subversion comand:
 
+0. DOWNLOAD AND UPDATES
+-----------------------
+
+To download the package for the first time run the following Subversion comand:
+
 	>> svn checkout http://geodynamics.org/svn/cig/seismo/3D/FAULT_SOURCE/branches/new_fault_db SPECFEM3D
 
 This will create a copy of the code in a directory called SPECFEM3D.
+Subsequently, to download new version of the package:
 
+	>> cd ~/SPECFEM3D
+	>> svn update
 
+This will update the package: it will replace files by new ones, add new files and remove deprecated 
+files if needed. Files that you generated and were not originally in the package will not be touched.
 
+
 I. INSTALLATION
 ----------------
 
@@ -115,8 +123,12 @@
     	>> cd ~/SPECFEM3D/CUBIT
     	>> cubit
     	In CUBIT's menu "Tools", select "Play Journal File" and select a script file, 
-    	for instance EXAMPLES/splay_faults/splay_faults.py
+    	for instance:
+	EXAMPLES/splay_faults/splay_faults.py
 
+        To run CUBIT from different working directories it is convenient to create the 
+        environment variable PYTHONPATH (or add to an existing one) with the path SPECFEM3D/CUBIT
+
   This creates several mesh files in directory CUBIT/MESH/:     
 	absorbing_surface_file_* (5 files)
 	free_surface_file
@@ -141,7 +153,7 @@
   and specify the path accordingly when executing xdecompose_mesh_SCOTCH.
 
 
-4. Edit the file DATA/Par_file: 
+4. Edit the file DATA/Par_file: (copy an example here, see III.2)
 
    	LOCAL_PATH = should be the path to DATABASES_MPI
 	NPROC      = number of processors. The same as the number of partitions in SCOTCH (step 3).
@@ -373,7 +385,7 @@
 VI. RUNNING ON FRAM (THE CALTECH GPS CLUSTER)
 ---------------------------------------------
 
-Add this to you ~/.bash_profile file:
+Before step I.3 add this to you ~/.bash_profile file:
 
   # Load modules:
   module load intel/intel-12
@@ -382,7 +394,7 @@
   # Set huge stack size:
   ulimit -s unlimited
 
-Compiler settings:
+Compiler settings for configure:
    FC = ifort
    MPIFC = mpiifort
 

Added: seismo/3D/FAULT_SOURCE/branches/new_fault_db/utils/go_mesher
===================================================================
--- seismo/3D/FAULT_SOURCE/branches/new_fault_db/utils/go_mesher	                        (rev 0)
+++ seismo/3D/FAULT_SOURCE/branches/new_fault_db/utils/go_mesher	2012-02-14 20:16:57 UTC (rev 19626)
@@ -0,0 +1,12 @@
+#!/bin/bash -v
+
+
+cd $PBS_O_WORKDIR
+
+
+current_pwd=$PWD
+
+mpirun $PWD/xgenerate_databases
+
+
+

Added: seismo/3D/FAULT_SOURCE/branches/new_fault_db/utils/go_solver
===================================================================
--- seismo/3D/FAULT_SOURCE/branches/new_fault_db/utils/go_solver	                        (rev 0)
+++ seismo/3D/FAULT_SOURCE/branches/new_fault_db/utils/go_solver	2012-02-14 20:16:57 UTC (rev 19626)
@@ -0,0 +1,12 @@
+#!/bin/bash -v
+
+
+cd $PBS_O_WORKDIR
+
+
+current_pwd=$PWD
+
+mpirun $PWD/xspecfem3D
+
+
+