[cig-commits] r20135 - short/3D/PyLith/benchmarks/trunk/dynamic/scecdynrup/tpv205-2d

[brad at geodynamics.org]

Author: brad
Date: 2012-05-15 14:56:59 -0700 (Tue, 15 May 2012)
New Revision: 20135

Modified:
   short/3D/PyLith/benchmarks/trunk/dynamic/scecdynrup/tpv205-2d/tabulate_offfaultdata.py
   short/3D/PyLith/benchmarks/trunk/dynamic/scecdynrup/tpv205-2d/tabulate_onfaultdata.py
Log:
Switched from tables to h5py.

Modified: short/3D/PyLith/benchmarks/trunk/dynamic/scecdynrup/tpv205-2d/tabulate_offfaultdata.py
===================================================================
--- short/3D/PyLith/benchmarks/trunk/dynamic/scecdynrup/tpv205-2d/tabulate_offfaultdata.py	2012-05-15 21:53:26 UTC (rev 20134)
+++ short/3D/PyLith/benchmarks/trunk/dynamic/scecdynrup/tpv205-2d/tabulate_offfaultdata.py	2012-05-15 21:56:59 UTC (rev 20135)
@@ -17,7 +17,7 @@
 outdir = "scecfiles/%s_%03dm_%s/" % (cell,dx,"gradient")
 
 # ----------------------------------------------------------------------
-import tables
+import h5py
 import numpy
 import time
 
@@ -28,8 +28,8 @@
 
 tolerance = 1.0e-6
 
-h5 = tables.openFile("%s.h5" % inputRoot, 'r')
-vertices = h5.root.geometry.vertices[:]
+h5 = h5py.File("%s.h5" % inputRoot, 'r', driver="sec2")
+vertices = h5['geometry/vertices'][:]
 ntargets = targets.shape[0]
 indices = []
 for target in targets:
@@ -42,9 +42,9 @@
 print "Coordinates of selected points:\n",vertices[indices,:]
 
 # Get datasets
-disp = h5.root.vertex_fields.displacement[:]
-vel = h5.root.vertex_fields.velocity[:]
-timeStamps =  h5.root.time[:].ravel()
+disp = h5['vertex_fields/displacement'][:]
+vel = h5['vertex_fields/velocity'][:]
+timeStamps =  h5['time'][:].ravel()
 nsteps = timeStamps.shape[0]
 dt = timeStamps[1] - timeStamps[0]
 

Modified: short/3D/PyLith/benchmarks/trunk/dynamic/scecdynrup/tpv205-2d/tabulate_onfaultdata.py
===================================================================
--- short/3D/PyLith/benchmarks/trunk/dynamic/scecdynrup/tpv205-2d/tabulate_onfaultdata.py	2012-05-15 21:53:26 UTC (rev 20134)
+++ short/3D/PyLith/benchmarks/trunk/dynamic/scecdynrup/tpv205-2d/tabulate_onfaultdata.py	2012-05-15 21:56:59 UTC (rev 20135)
@@ -15,7 +15,7 @@
 outdir = "scecfiles/%s_%03dm_%s/" % (cell,dx,"gradient")
 
 # ----------------------------------------------------------------------
-import tables
+import h5py
 import numpy
 import time
 
@@ -40,8 +40,8 @@
 
 tolerance = 1.0e-6
 
-h5 = tables.openFile("%s.h5" % inputRoot, 'r')
-vertices = h5.root.geometry.vertices[:]
+h5 = h5py.File("%s.h5" % inputRoot, 'r', driver="sec2")
+vertices = h5['geometry/vertices'][:]
 ntargets = targets.shape[0]
 indices = []
 for target in targets:
@@ -55,10 +55,10 @@
 
 
 # Get datasets
-slip = h5.root.vertex_fields.slip[:]
-slip_rate = h5.root.vertex_fields.slip_rate[:]
-traction = h5.root.vertex_fields.traction[:]
-timeStamps =  h5.root.time[:].ravel()
+slip = h5['vertex_fields/slip'][:]
+slip_rate = h5['vertex_fields/slip_rate'][:]
+traction = h5['vertex_fields/traction'][:]
+timeStamps =  h5['time'][:].ravel()
 nsteps = timeStamps.shape[0]
 dt = timeStamps[1] - timeStamps[0]