[cig-commits] r20204 - in seismo/3D/SPECFEM3D_GLOBE/trunk/doc: . USER_MANUAL

[dkomati1 at geodynamics.org]

Author: dkomati1
Date: 2012-05-20 16:08:53 -0700 (Sun, 20 May 2012)
New Revision: 20204

Modified:
   seismo/3D/SPECFEM3D_GLOBE/trunk/doc/USER_MANUAL/manual_SPECFEM3D_GLOBE.pdf
   seismo/3D/SPECFEM3D_GLOBE/trunk/doc/USER_MANUAL/manual_SPECFEM3D_GLOBE.tex
   seismo/3D/SPECFEM3D_GLOBE/trunk/doc/time_scheme_we_use_in_the_code_from_Hughes_1987.pdf
Log:
updated some references in the manual, and fixed a statement that was not fully correct in the PDF file of the time scheme we use


Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/doc/USER_MANUAL/manual_SPECFEM3D_GLOBE.pdf
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Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/doc/USER_MANUAL/manual_SPECFEM3D_GLOBE.tex
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/doc/USER_MANUAL/manual_SPECFEM3D_GLOBE.tex	2012-05-20 23:06:43 UTC (rev 20203)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/doc/USER_MANUAL/manual_SPECFEM3D_GLOBE.tex	2012-05-20 23:08:53 UTC (rev 20204)
@@ -166,13 +166,13 @@
 For a detailed introduction to the SEM as applied to
 global and regional seismic wave propagation, please consult \citet{KoVi98,KoTr99,Ch00,KoTr02a,KoTr02b,KoRiTr02,ChCaVi03,CaChViMo03,ChVa04,ChKoViCaVaFe07,TrKoLi08}.
 A detailed theoretical analysis of the dispersion
-and stability properties of the SEM is available in \citet{Coh02}, \citet{DeSe07} and \citet{SeOl07}.\\
+and stability properties of the SEM is available in \citet{Coh02}, \citet{DeSe07}, \citet{SeOl07} and \citet{SeOl08}.\\
 
 Effects due to lateral variations in compressional-wave
 speed, shear-wave speed, density, a 3D crustal model, ellipticity,
 topography and bathymetry, the oceans, rotation, and self-gravitation are included.
 The package can accommodate full 21-parameter anisotropy \citep{ChTr07}
-as well as lateral variations in attenuation \citep{SavWiTr05}. Adjoint
+as well as lateral variations in attenuation \citep{SaKoTr10}. Adjoint
 capabilities and finite-frequency kernel simulations are also included
 \citep{LiTr06,TrKoLi08,LiTr08,FiIgBuKe09,ViOp09}.\\
 
@@ -311,7 +311,7 @@
 \item [{\texttt{FLAGS\_CHECK}}] Compiler flags for non-critical subroutines.
 \item [{\texttt{FLAGS\_NO\_CHECK}}] Compiler flags for creating fast, production-run
 code for critical subroutines.
-\item [{\texttt{LOCAL\_PATH\_IS\_ALSO\_GLOBAL}}] 
+\item [{\texttt{LOCAL\_PATH\_IS\_ALSO\_GLOBAL}}]
 If you want the parallel mesher to write a parallel (i.e., split) database for the solver on the
 local disks of each of the compute nodes, set this flag to \texttt{.false.}.
 Some systems have no local disks
@@ -480,7 +480,7 @@
 \section{Adding OpenMP support in addition to MPI}
 
 OpenMP support can be enabled in addition to MPI. However, in many cases performance will not improve
-because our pure MPI implementation is already heavily optimized and thus the resulting code will in fact 
+because our pure MPI implementation is already heavily optimized and thus the resulting code will in fact
 be slightly slower. A possible exception could be IBM BlueGene-type architectures.
 
 To enable OpenMP, uncomment the OpenMP compiler option in two lines in file \texttt{src/specfem3D/Makefile.in}
@@ -494,7 +494,7 @@
 OpenMP threads, but most preferably being twice as the number of
 OpenMP threads (thus chunk size = 8 for 4 OpenMP threads etc).
 If OMP\_SCHEDULE is not set or is empty, the DO-loop will assume generic
-scheduling policy, which will slow down the job quite a bit. 
+scheduling policy, which will slow down the job quite a bit.
 
 \section{Visualizing the subroutine calling tree of the source code}
 
@@ -1635,8 +1635,8 @@
 of elements needs to be adjusted as well to maintain spectral elements
 that are as cube-like as possible. The code attempts to do this, but
 be sure to view the mesh with your favorite graphics package to make
-sure that the element are well behaved. 
-Remember: a high-quality mesh is paramount for accurate simulations. 
+sure that the element are well behaved.
+Remember: a high-quality mesh is paramount for accurate simulations.
 In addition to a reorganization of the radial distribution of elements,
 the time stepping and period range in which the attenuation is applied
 is automatically determined. The minimum and maximum periods for attenuation

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/doc/time_scheme_we_use_in_the_code_from_Hughes_1987.pdf
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