[cig-commits] r22716 - in short/3D/PyLith/trunk/doc/userguide: . intro intro/figs palettes
brad at geodynamics.org
brad at geodynamics.org
Mon Aug 19 16:36:45 PDT 2013
Author: brad
Date: 2013-08-19 16:36:44 -0700 (Mon, 19 Aug 2013)
New Revision: 22716
Added:
short/3D/PyLith/trunk/doc/userguide/intro/figs/packages.tex
short/3D/PyLith/trunk/doc/userguide/intro/figs/workflow.tex
short/3D/PyLith/trunk/doc/userguide/palettes/
short/3D/PyLith/trunk/doc/userguide/palettes/figcolors.tex
Removed:
short/3D/PyLith/trunk/doc/userguide/intro/figs/packages.svg
short/3D/PyLith/trunk/doc/userguide/intro/figs/workflow.svg
Modified:
short/3D/PyLith/trunk/doc/userguide/intro/figs/packages.pdf
short/3D/PyLith/trunk/doc/userguide/intro/figs/workflow.pdf
short/3D/PyLith/trunk/doc/userguide/intro/intro.lyx
Log:
Updated workflow and pacakges diagrams (switched to tikz).
Modified: short/3D/PyLith/trunk/doc/userguide/intro/figs/packages.pdf
===================================================================
(Binary files differ)
Deleted: short/3D/PyLith/trunk/doc/userguide/intro/figs/packages.svg
===================================================================
--- short/3D/PyLith/trunk/doc/userguide/intro/figs/packages.svg 2013-08-19 07:43:54 UTC (rev 22715)
+++ short/3D/PyLith/trunk/doc/userguide/intro/figs/packages.svg 2013-08-19 23:36:44 UTC (rev 22716)
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===================================================================
--- short/3D/PyLith/trunk/doc/userguide/intro/figs/packages.tex (rev 0)
+++ short/3D/PyLith/trunk/doc/userguide/intro/figs/packages.tex 2013-08-19 23:36:44 UTC (rev 22716)
@@ -0,0 +1,99 @@
+\documentclass[crop,tikz]{standalone}
+\usepackage{tikz}
+\usetikzlibrary{external}
+\tikzexternalize % activate
+
+\begin{document}
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+\input{../../palettes/figcolors}
+\tikzstyle{level0} = [rectangle,
+ minimum width=5em,
+ text centered,
+ rounded corners=0.75em,
+ minimum height=1.5em,
+ very thick,
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+ top color=ltblue!50!white,
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+\tikzstyle{level1} = [rectangle,
+ minimum width=5em,
+ text centered,
+ rounded corners=0.75em,
+ minimum height=1.5em,
+ very thick,
+ draw=green!80!black,
+ top color=ltgreen!50!white,
+ bottom color=green]
+\tikzstyle{level2} = [rectangle,
+ minimum width=5em,
+ text centered,
+ rounded corners=0.75em,
+ minimum height=1.5em,
+ very thick,
+ draw=orange!80!black,
+ top color=ltorange!50!white,
+ bottom color=orange]
+\tikzstyle{level3} = [rectangle,
+ minimum width=5em,
+ text centered,
+ rounded corners=0.75em,
+ minimum height=1.5em,
+ very thick,
+ draw=red!80!black,
+ top color=ltred!50!white,
+ bottom color=red]
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+\tikzstyle{arrow13} = [arrowto, color=red]
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+ % Level 1
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+ \node (petsc) [level1, left of=spatialdata, xshift=0em] {PETSc};
+ \node (fiat) [level1, right of=spatialdata] {FIAT};
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+ \path (pylith) edge[arrow01] (petsc);
+ \path (pylith) edge[arrow01] (spatialdata);
+ \path (pylith) edge[arrow01] (fiat);
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+ \node (hdf5) [level2, left of=proj4, xshift=0em] {HDF5};
+ \node (netcdf) [level2, left of=hdf5, xshift=0em] {NetCDF};
+ \node (pyre) [level2, right of=proj4, xshift=0em] {Pyre};
+ \node (numpy) [level2, right of=pyre, xshift=0em] {numpy};
+
+ \path (petsc) edge[arrow12] (hdf5);
+ \path (spatialdata) edge[arrow12] (pyre);
+ \path (spatialdata) edge[arrow12] (proj4);
+ \path (spatialdata) edge[arrow12] (numpy);
+ \path (fiat) edge[arrow12] (numpy);
+ \path (netcdf) edge[arrow12] (hdf5);
+
+ \path (pylith) edge[arrow02] (hdf5);
+ \path (pylith) edge[arrow02, bend right=30] (netcdf);
+ \path (pylith) edge[arrow02] (pyre);
+
+ % Level 3
+ \node (mpi) [level3, below of=proj4, yshift=+3em] {MPI};
+ \node (blas) [level3, left of=mpi, xshift=-4em] {BLAS/LAPACK};
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+ \path (pyre) edge[arrow23] (mpi);
+ \path (hdf5) edge[arrow23] (mpi);
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+ \path (petsc) edge[arrow13] (mpi);
+ \path (petsc) edge[arrow13, bend right=25] (blas);
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+
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Modified: short/3D/PyLith/trunk/doc/userguide/intro/figs/workflow.pdf
===================================================================
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Deleted: short/3D/PyLith/trunk/doc/userguide/intro/figs/workflow.svg
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--- short/3D/PyLith/trunk/doc/userguide/intro/figs/workflow.svg 2013-08-19 07:43:54 UTC (rev 22715)
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- id="flowPara3371">Mayavi2</flowPara></flowRoot> <rect
- style="opacity:1;fill:#60cc0e;fill-opacity:1;stroke:#000000;stroke-width:1;stroke-linecap:round;stroke-linejoin:round;stroke-miterlimit:4;stroke-dasharray:none;stroke-dashoffset:0;stroke-opacity:1"
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Added: short/3D/PyLith/trunk/doc/userguide/intro/figs/workflow.tex
===================================================================
--- short/3D/PyLith/trunk/doc/userguide/intro/figs/workflow.tex (rev 0)
+++ short/3D/PyLith/trunk/doc/userguide/intro/figs/workflow.tex 2013-08-19 23:36:44 UTC (rev 22716)
@@ -0,0 +1,106 @@
+\documentclass[crop,tikz]{standalone}
+\usepackage{tikz}
+\usetikzlibrary{external}
+\tikzexternalize % activate
+
+\begin{document}
+
+\usetikzlibrary{arrows,shapes}
+\input{../../palettes/figcolors}
+\tikzstyle{phase} = [rectangle,
+ draw=dkyellow!80!black,
+ top color=yellow,
+ bottom color=dkyellow]
+\tikzstyle{cig} = [rectangle,
+ rounded corners=0.5em,
+ draw=orange!80!black,
+ top color=ltorange!50!white,
+ bottom color=orange]
+\tikzstyle{open} = [rectangle,
+ rounded corners=0.5em,
+ draw=green!80!black,
+ top color=ltgreen!20!white,
+ bottom color=green]
+\tikzstyle{free} = [rectangle,
+ rounded corners=0.5em,
+ draw=blue!80!black,
+ top color=ltblue!20!white,
+ bottom color=blue]
+\tikzstyle{commercial} = [rectangle,
+ rounded corners=0.5em,
+ draw=ltred!80!black,
+ top color=ltred!20!white,
+ bottom color=red!70!white!100]
+\tikzstyle{available} = [thick, color=black]
+\tikzstyle{planned} = [thick, dashed, color=mdslate]
+
+
+\begin{tikzpicture}[scale=0.75, transform shape,
+ node distance=3.0em,
+ text width=6em, text centered, minimum height=2em, thick]
+
+ % Phases
+ \node (structure) [phase] {Geologic Structure};
+ \node (meshing) [phase, right of=structure, xshift=6em] {Mesh Generation};
+ \node (physics) [phase, right of=meshing, xshift=6em] {Physics Code};
+ \node (viz) [phase, right of=physics, xshift=6em] {Visualization};
+
+ % Geologic structure
+ \node (gocad) [commercial, below of=structure] {Gocad};
+ \node (earthviz) [commercial, below of=gocad] {Earth Vision};
+
+ % Mesh generation
+ \node (cubit) [commercial, below of=meshing] {CUBIT};
+ \node (lagrit) [free, below of=cubit] {LaGriT};
+ \node (tetgen) [open, below of=lagrit] {TetGen};
+ \node (gmsh) [open, below of=tetgen] {Gmsh};
+
+ % Physics code
+ \node (pylith) [cig, below of=physics] {PyLith};
+ \node (relax) [cig, below of=pylith] {Relax};
+ \node (geofest) [free, below of=relax] {GeoFEST};
+ \node (abaqus) [commercial, below of=geofest] {Abaqus};
+
+ % Visualization
+ \node (paraview) [open, below of=viz] {ParaView};
+ \node (visit) [open, below of=paraview] {Visit};
+ \node (matlab) [commercial, below of=visit] {Matlab};
+ \node (matplotlib) [open, below of=matlab] {Matplotlib};
+ \node (gmt) [open, below of=matplotlib] {GMT};
+
+ % Paths
+ \path (gocad.east) edge[available] (cubit.west);
+ \path (gocad.east) edge[available] (lagrit.west);
+ \path (earthviz.east) edge[available] (cubit.west);
+ \path (earthviz.east) edge[available] (lagrit.west);
+
+ \path (cubit.east) edge[available] (pylith.west);
+ \path (cubit.east) edge[available] (abaqus.west);
+ \path (lagrit.east) edge[available] (pylith.west);
+ \path (lagrit.east) edge[available] (geofest.west);
+ \path (tetgen.east) edge[planned] (pylith.west);
+ \path (gmsh.east) edge[planned] (pylith.west);
+
+ \path (pylith.east) edge[available] (paraview.west);
+ \path (pylith.east) edge[available] (visit.west);
+ \path (pylith.east) edge[available] (matlab.west);
+ \path (pylith.east) edge[available] (matplotlib.west);
+ \path (relax.east) edge[available] (paraview.west);
+ \path (relax.east) edge[available] (gmt.west);
+
+ % Legend
+ \node (cig) [cig, below of=earthviz, yshift=-8em] {CIG};
+ \node (open) [open, below of=cig] {Open Source};
+ \node (free) [free, right of=cig, xshift=6em] {Free};
+ \node (commercial) [commercial, below of=free] {Commercial};
+
+ \node (available) [available, right of=free, xshift=6em] {Available};
+ \path (available.south west) edge[available] (available.south east);
+
+ \node (planned) [planned, below of=available] {Planned};
+ \path (planned.south west) edge[planned] (planned.south east);
+
+
+\end{tikzpicture}
+
+\end{document}
Modified: short/3D/PyLith/trunk/doc/userguide/intro/intro.lyx
===================================================================
--- short/3D/PyLith/trunk/doc/userguide/intro/intro.lyx 2013-08-19 07:43:54 UTC (rev 22715)
+++ short/3D/PyLith/trunk/doc/userguide/intro/intro.lyx 2013-08-19 23:36:44 UTC (rev 22716)
@@ -178,7 +178,7 @@
The modeling of the physical processes of interest is performed by a code
such as PyLith.
Present output consists of VTK or HDF5/Xdmf files which can be used by
- a number of visualization codes (e.g., ParaView, Visit, MayaVi, and Matlab).
+ a number of visualization codes (e.g., ParaView, Visit, and Matlab).
\end_layout
@@ -193,7 +193,7 @@
\align center
\begin_inset Graphics
filename figs/workflow.pdf
- scale 67
+ width 4in
\end_inset
@@ -256,7 +256,7 @@
\align center
\begin_inset Graphics
filename figs/packages.pdf
- scale 40
+ width 4in
\end_inset
Added: short/3D/PyLith/trunk/doc/userguide/palettes/figcolors.tex
===================================================================
--- short/3D/PyLith/trunk/doc/userguide/palettes/figcolors.tex (rev 0)
+++ short/3D/PyLith/trunk/doc/userguide/palettes/figcolors.tex 2013-08-19 23:36:44 UTC (rev 22716)
@@ -0,0 +1,22 @@
+\definecolor{yellow}{rgb}{1.0, 1.0, 0.45} % 255/255/115
+\definecolor{dkyellow}{rgb}{0.9, 0.9, 0.0} % % 230/230/0
+
+\definecolor{ltorange}{rgb}{1.0, 0.74, 0.41} % 255/188/105
+\definecolor{orange}{rgb}{0.96, 0.50, 0.0} % 246/127/0
+
+\definecolor{ltred}{rgb}{1.0, 0.25, 0.25} % 255/64/64
+\definecolor{red}{rgb}{0.79, 0.00, 0.01} % 201/0/3
+
+\definecolor{ltpurple}{rgb}{0.81, 0.57, 1.00} % 206/145/255
+\definecolor{purple}{rgb}{0.38, 0.00, 0.68} % 97/1/175
+
+\definecolor{ltblue}{rgb}{0.2, 0.73, 1.0} % 51/187/255
+\definecolor{blue}{rgb}{0.12, 0.43, 0.59} % 30/110/150
+
+\definecolor{ltltgreen}{rgb}{0.7, 1.00, 0.7} % 96/204/14
+\definecolor{ltgreen}{rgb}{0.37, 0.80, 0.05} % 96/204/14
+\definecolor{green}{rgb}{0.23, 0.49, 0.03} % 59/125/8
+
+\definecolor{dkslate}{rgb}{0.18, 0.21, 0.28} % 47/53/72
+\definecolor{mdslate}{rgb}{0.45, 0.50, 0.68} % 114/127/173
+\definecolor{ltslate}{rgb}{0.85, 0.88, 0.95} % 216/225/229
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