December 2013 Archives by author

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Starting: Sun Dec 1 10:59:05 PST 2013
Ending: Mon Dec 30 06:44:47 PST 2013
Messages: 1302

• [cig-commits] [commit] master: added a clarification comment for running xcombine_vol_data (fa99f77)   cig_noreply at geodynamics.org
• [cig-commits] [commit] master: Merge pull request #74 from carltape/master (846f6e4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: fix one error in compute_forces_acoustic.f90 (ced24b4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: Merge pull request #3 from xiezhinan/devel (1ac8acc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] devel: Merge pull request #4 from geodynamics/QA (e61cc44)   cig_noreply at geodynamics.org
• [cig-commits] [commit] devel's head updated: Merge pull request #4 from geodynamics/QA (e61cc44)   cig_noreply at geodynamics.org
• [cig-commits] [commit] master: Merge pull request #5 from geodynamics/devel (ed58446)   cig_noreply at geodynamics.org
• [cig-commits] [commit] master's head updated: Merge pull request #5 from geodynamics/devel (ed58446)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Update PetscMalloc3() call for interface changes. Updated test data. (e028746)   cig_noreply at geodynamics.org
• [cig-commits] [commit] master: Add source number 7 (2127f37)   cig_noreply at geodynamics.org
• [cig-commits] [commit] master: Merge pull request #6 from pcristini/master (d43e73e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: fix one error in specfem2D.F90 (2743b55)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: Merge pull request #7 from xiezhinan/devel (4ae2323)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: Merge branch 'master' into QA (75fcabc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA's head updated: Merge branch 'master' into QA (75fcabc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] master: Merge pull request #8 from geodynamics/QA (209f359)   cig_noreply at geodynamics.org
• [cig-commits] [commit] master's head updated: Merge pull request #8 from geodynamics/QA (209f359)   cig_noreply at geodynamics.org
• [cig-commits] [commit] devel's head updated: Merge branch 'master' into QA (75fcabc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] devel: Merge pull request #9 from geodynamics/master (d3c1890)   cig_noreply at geodynamics.org
• [cig-commits] [commit] devel's head updated: Merge pull request #9 from geodynamics/master (d3c1890)   cig_noreply at geodynamics.org
• [cig-commits] [commit] master: Merge pull request #10 from geodynamics/devel (14376b1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] master's head updated: Merge pull request #10 from geodynamics/devel (14376b1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: fix error concerning fluid-solid adjoint inversion (406a373)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: clean the code for next change (ec49617)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA's head updated: clean the code for next change (ec49617)   cig_noreply at geodynamics.org
• [cig-commits] [commit] devel's head updated: clean the code for next change (ec49617)   cig_noreply at geodynamics.org
• [cig-commits] [commit] master: Merge branch 'devel' (22b9882)   cig_noreply at geodynamics.org
• [cig-commits] [commit] master's head updated: Merge branch 'devel' (22b9882)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: Merge branch 'devel' (ee914a2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: clean code and fix fluid-solid forward simulation (2b52eda)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: Merge branch 'devel' to includ new modification (48d98ab)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: Merge pull request #12 from xiezhinan/devel (6c511c4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA's head updated: Merge pull request #12 from xiezhinan/devel (6c511c4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] devel's head updated: Merge pull request #12 from xiezhinan/devel (6c511c4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] master: Merge branch 'devel' (6810221)   cig_noreply at geodynamics.org
• [cig-commits] [commit] master's head updated: Merge branch 'devel' (6810221)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Enabled C++ unit test for hex8 refinement w/fault. (483d179)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Begin improvement of full-scale tests (quad4). (176b7be)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: Combine volume data for ADIOS. modified Makefile.in for conditional compilation (a672af7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: text formatted. (9232d96)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: temporary fix. different targets for combine_vol_data w/ and w/o ADIOS (2dc5012)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: Merge pull request #75 from mpbl/devel (2836170)   cig_noreply at geodynamics.org
• [cig-commits] [commit] devel's head updated: Merge pull request #74 from carltape/master (846f6e4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: adds updates on the master branch to QA (b5882b4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: updates QA with master commits (bb85e38)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA's head updated: updates QA with master commits (bb85e38)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: Merge branch 'master' into QA updates QA with Carl's test commit which was on master branch, but not done in QA (41ef047)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: combine_vol_data rely on par_file to use ADIOS. (b51a2fa)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: removed adios only version of combine vol_data. (9df1942)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: Merge pull request #76 from mpbl/devel (232818c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] branch 'QA' created   cig_noreply at geodynamics.org
• [cig-commits] [commit] branch 'coupling_vadim' created   cig_noreply at geodynamics.org
• [cig-commits] [commit] branch 'update_temporary' created   cig_noreply at geodynamics.org
• [cig-commits] [commit] branch 'sunflower' created   cig_noreply at geodynamics.org
• [cig-commits] [commit] branch 'devel' created   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: Modified specfem3F.f90 along with read_arrays_solver.f90 to switch from static allocation to dynamic allocation for some arrays. Arrays impacted are : ibool, xix, xiy, xiz, etax, etay, etaz, gammax, gammay, gammaz, jacobian, xstore, ystore, zstore, kappastore, mustore, not_fully_in_bedrock, flag_sediments, rho_vp, rho_vs, idoubling, rmass, rmass_ocean_load, updated_dof_ocean_load, displ, veloc, accel. (cdc49bf)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: added a few variables in constants.h.in that should be disposed of. modified specfem3D.f90 to prepare for external meshes. (5639d43)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: added communications for simulations with external meshes. (089ac3a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: modified constants.h.in due to error in previous commit. (ffa4968)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: added external mesh to meshfem3D. Still lacks the generation of database (the partitioning), sources/receivers management and Stacey conditions. (f7cbc86)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: fixed a few bugs. (14a96a7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: added locating receivers on the surface and recording seismos normal to surface in case of external mesh. (45b4800)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: added source normal detection. (9c0c68c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: added surface movie and shakemap. (16b95e9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: fixed a symbol with too long a name. (06aaeb1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: added gatherv for movie surface ans shakemap. (6cfe9bd)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: fixed symbols with too long a name. (370a3f9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: fixed shakemap (c90d877)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: fixed bug in locate_source : missing argument NPROC. (084052d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: suppressed use of array subsection in assemble_MPI_scalar/vector. (59c8995)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: added choice if seismograms are recorded along normal to surface. (de60da9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: added wait for assemble_MPI_scalar send buffers. (9200e34)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: fixed a bug in source and receivers detection. (ee04594)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: added dummy size for itopo_bathy when no topography. (d31a2ec)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: added detection of inner elements. (56e2811)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: fixed a bug in surface detection for external meshes. (3c51c11)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: modified create_movie_AVS_DX.f90 for external meshes. (60d5d42)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: fixed a glitch in create_movie_AVS_DX.f90 for get_global_AVS. (7a06472)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: modified print output in create_movie_AVS_DX.f90. (8a1a9a0)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: prepared communication overlap. (4ebf824)   cig_noreply at geodynamics.org
• [cig-commits] [commit] update_temporary: added compute_forces for communication overlapping. (4101649)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: Trying again to create branch from current working copy. (bc307cc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: Initial commit with GPU code merged into current trunk-code, which had a few changes (how it iterates over the surface for example. (043b2dc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: First running version with fixes in saving surface movie, but is not yet correct. (cfe822b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: added script to help build and extend configure scripts (5cb3935)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: fixed GPU_MODE and MESH_POINTER variables in method call (b4746dd)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: working iterate time i think (0364af4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: cleans up compilation files (4b647b0)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: updates for acoustic routines, configure and Makefile.in (533a385)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: updates attenuation in elastic kernel; unravels elastic and noise simulation preparation (84ba561)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: updates acoustic/elastic coupling and oceans routines (702e461)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: updates hprime and hprimewgll in compute forces (0e35b44)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: added ability to compile w/out cuda (4ea02af)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: adding git ignore file (dc35911)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: fixing gitignore (1da8c53)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: Added Experimental OpenMP CFE_Dev kernel (04a9514)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: quick fix to openmp and added GPU_MODE msg to function stubs (8faadb9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: added stdio.h header to method_stubs.c to fix compile (dd5f67e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: updates preparation routines; kernels tested w/ absorbing boundaries; version used for HP node benchmark (120a03f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: updates preparation for acoustic/elastic-coupled simulations; updates user noise distribution function and example (fb4e254)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: updates preparation for acoustic & elastic adjoint simulations (5519799)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: adds mesh coloring option (2bd8e7b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: updates declarations; re-adds anisotropy (823ca00)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: adds gravity (7de5383)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: updates device initialization (0297ce2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: updates arrays for gravity (1dee44b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: updates device initialization; updates mesh coloring routine w/ simple color balancing (0246516)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: a crash fix for NOISE=3 and a few additions (524a5eb)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: additions to readme for todi.cscs.ch (cd77fd9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: fixed typedef typo when compiling on non-nvcc systems (5da5e76)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: seemingly fixed problem with partitions that do not have a surface file. still should poke around in the code and put some more if statements to be sure (09cdb25)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: updates routines and Makefiles for serial configuration (--without-mpi) (b3cf78f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: removed -qsave from the default flags.guess (069084e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: coloring works for single threaded (1fcc8c6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: working openMP coloring (d544caa)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: additions after adding colored-openmp code (337ea20)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: making MPI only version default (c3e41e3)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: updated flags.guess (f755b46)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: updates configuration files to use ./configure --with-openmp for OpenMP version; renames file endings to compute_forces_elastic.F90 and prepare_timerun.F90; updates preparations to use openmp routine also without mesh coloring (a747f68)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: adds flag USE_RICKER_IPATI to use ricker source time function as default rather than a gaussian (d786836)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: changed integer(long) to integer, following a suggestion by Valentin Pavlov (5b65c7a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: updates error message outputs (1f2259d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: merged current trunk into SUNFLOWER branch; needs clean up (7512b3d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: cleans up, includes current trunk routines (2e413ee)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: merges revisions from 20103 into current branch (4a7db9c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: This commit merges several optimization changes back into the working svn sunflower release including: (f5c2297)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: adds ipati model to mesher; updates formatting; moves higher-order Deville routines into separate file (65bb2a0)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: merges revisions from 20206 into current branch (bf40018)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: minor change in compute_forces_elastic_cuda.cu (f025b3e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] sunflower: updates gpu branch with revision 20462 (95d1837)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: Combine volume data for ADIOS. modified Makefile.in for conditional compilation (a672af7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: text formatted. (9232d96)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: temporary fix. different targets for combine_vol_data w/ and w/o ADIOS (2dc5012)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: Merge pull request #75 from mpbl/devel (2836170)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: Merge branch 'master' into QA updates QA with Carl's test commit which was on master branch, but not done in QA (41ef047)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: combine_vol_data rely on par_file to use ADIOS. (b51a2fa)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: removed adios only version of combine vol_data. (9df1942)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA: Merge pull request #76 from mpbl/devel (232818c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: changed "Max norme" to "Max norm" (a354851)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: deleted two files and moved four old files (meshers for particular geometries or models) to directory UTILS (2676719)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: cleaned and updated DATA directory for release of version 5.2 (9320e8a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: Major update: release of version 5.2. (e17e991)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: suppressed extra space before : in three comments (a22e1f4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added a README file (basic manual) (a1be48f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added program to create a Gaussian profile for topography or bathymetry (2df7ce4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: updated the README file (ab4b046)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: updated three comments (3abbad6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: changed parameters for the Gaussian bathymetry profile (ea05830)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: updated print statement about fluid/solid edge detection (9613fe1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: removed some useless macros in header of Postscript files. also fixed a small bug when turning off display of mesh in Postscript files: external shape of the mesh was not displayed. I now display the color elements without their black edges to fix the problem. (a275988)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: updated the README file (da9ef2e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: suppressed useless white spaces (7139b43)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added action='read' to open statement (f2caab9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added thermocline Abel Balanche directory to UTILS (139c813)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added sun grid engine scripts for UPPA cluster. (e325a7d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: renamed some files from .f90 to .F90 in order to enable conditional compilation with a preprocessor, and changing the Makefile accordingly. (7e751eb)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: modified script for UPPA cluster. (fb78665)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: parallel and unstructured mesher and solver. A TODO list has been included, the readme has been updated (more to come). (3dc6714)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: free surface for unstructured meshes. (2ed357b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: updated the readme. (d003c6a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added an example of an unstructured case in DATA with a fluide/solid interface. This case blows up after approximately 30000, due to a p (4b73daf)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: output of source time function in a text file done by one process only in case of a parallel job. (9e39dbe)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added call to exit_MPI instead of stop in order to terminate parallel jobs properly with sun grid engine when they need to be interrupted. (e4c72e9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: shortened some subroutine names to avoid compilation warnings. (3ce7c1a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: renamed plotpost.f90 to plotpost.F90 to enable conditional compilation during preprocessing. (9f751f4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: enabled output of vectxxxx.ps files in serial and parallel. (d4fc894)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: slight error in sun grid engine script for UPPA that did not work with more than 10 processes. modified UPPA parallel script, it is no longer necessary to specify nproc in both submit_sun_grid_engine_UPPA_parallel.sh and qsub_UPPA_parallel.sh. clearer ps output file mesh_partition.ps for partitioning. (d3b1969)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: updated TODO list. color in vectxxxx.ps files for fluid/solid edges was not pink as it should be. (cd0389b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added option to generate or not STATIONS file (useful for complex geometries) in Par_file. (2dc3982)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: updated comments. (e8ab7a6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: fixed two small bugs regarding output images (.pnm). Size is now as intended (sqrt of nelements in total, not just local to the process), and the pnm header is now written with zeros when there was no digits (problem with width equal to 1054 for example, which was written 1 54). (bfad7d9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added comments. (df87b5a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: updated TODO list. (a8208e5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added Par_file_unstruct for unstructured example. (0469cf3)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: changed default partitioning method, as METIS or SCOTCH or not always available. (2b6b485)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added orange color in postscript output for acoustic free surface. (330637f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added calculation of elastic energy, taken from a very old version. Also suppressed Nicolas' commented lines, starting with !!$ (d23a000)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: corrected a some warnings with ifort. (50b3ed3)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: corrected some warnings with ifort. (e6bbd51)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: corrected remaining warnings with ifort/pgf90. uncommented output of mesh gnuplot file for structured meshes. (932ef63)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: dual graph for partitioning is no longer constructed if nproc==1. (60535cb)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: converted hprime derivation matrix to its transpose to conform to usual definition as in Deville et al. (2002) (2dd02a3)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: fixed a typo in a comment (f25e1ef)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added sorting of ibool to reduce cache misses (61eb1ad)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added P velocity model as background on color images (ef968e3)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: fixed a glitch due to hprime being now its tranpose in define_derivation_matrices.f90. (85620b8)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: changed i6.6 to i7.7 to avoid problems after 999999 time steps (96efc9b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: changed i6 to i7 to avoid problems after 999999 time steps (2a3b549)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added calculation of kinetic and potential energy in the fluid (we had it in the solid only before) (1576bf2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: adding support for single or double precision. Set CUSTOM_REAL and CUSTOM_MPI_TYPE in constans.h and precision_mpi.h to enable desired precision, and recompile (default is double precision). Using pgf90, single was 10-15% faster on our AMD Opteron cluster. (62e73b9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: using pgf90 as default compiler. (694ee41)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: updating TODO_list. (96bc27e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: I forgot to commit compute_energy.f90 for use of single or double precision. (6fef1f4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: adding comments. (cf8c9ee)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added C routines to compute the relaxation constants for attenuation for SPECFEM2D (ab031c2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: suppressed -Mipa=fast, inline for pgf90 (29f7d03)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: improved a print statement (9a91e56)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: fixed bug introduced by Nicolas Le Goff: some constants had been converted to single precision (e3558d8)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added attenuation constants for Paul Cristini for fluid/solid ocean acoustics simulations (576ab74)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: modified code to be able to use any number (called N_SLS in constants.h) of standard linear solids for attenuation (this was set to 2 before and could not be changed). Also removed useless white spaces in some routines. (358b78f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: removed old attenuation values for Paul Cristini, which did not work (73f0628)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: suppressed a non standard statement that generated a warning with the IBM xlf compiler (1fc3709)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: removed unused lines and unused variables in acoustic absorbing boundary condition (1fdabd6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: - fixed a bug detected by Kasper van Wijk: top absorbing surface was deactivated by top free surface in the acoustic case - copied the new (improved) convolution code and script from the 3D code - fixed small bugs in the routine to check the grid when the whole mesh is acoustic: S wave information was calculated and was incorrect because there is no S wave velocity - replaced all "end if" with "endif" and "end do" with "enddo" (75767bf)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: fixed small bug introduced by Nicolas Le Goff: "if" statement not correctly included in another "if" statement (78b6b19)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added use of a C code to compute attenuation constants during the run, no need to recompile each time they change. Par_file was modified accordingly, to add the necessary parameters. The old behavior is still available by setting the attenuation constants in attenuation_model.f90 (and recompiling). Makefile now requires a C compiler. (68f30fd)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT,QA,devel,master: correted (a831573)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT,QA,devel,master: r1776 : fixed a bug related to any_elastic; we need a global any_elastic when we check if simulation is acoustic only (for attenuation for example). current revision : fixed bugs in plotpost.f90 related to globals uninitialized variables when running in serial. (1a28cfd)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: fixed a bug in reading of interfaces in meshfem2D due to an uninitialized variable (xinterface_dummy_previous). (e16aa4b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: fixed display of velocity model in color image in parallel. (b790cc5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT,QA,devel,master: fixed issue due to line length in specfem2D.F90. fixed bug encountered with attenuation (arrays e1, e11 and e13 were allocated but not initialized); depending on the platform/compiler, the simulation could blow up. (041fe02)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added overlapping of comunications with computation. (91b8fbf)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: assembling of velocity model to create color image is now done only once. (eb046da)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: modified submission script for UPPA cluster. (87a5428)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added comments in submission script for UPPA cluster. (11522e0)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT,QA,devel,master: added N_SLS (number of standard linear solids for attenuation) in Par_file, to allow the user to change its value without having to recompile specfem2D; it is no longer in constants.h. Par_file has now changed accordingly. (fc8897c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: fixed a few warnings due to unused variables introduced with r1783. (41dfae9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: fixed a few warnings due to tab formatting in specfem2D.F90. (5ba5d33)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: fixed a bug with double precision binary output files .bin (the first half was the converted values in single, the rest was random). (39d5450)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT,QA,devel,master: data in the seismograms between two NTSTEP_BETWEEN_OUTPUT_INFO are now added to the binary seismograms, and appended to the ascii seismograms. The full seismograms are no longer written every NTSTEP_BETWEEN_OUTPUT_INFO; arrays for storing seismograms are now of size NTSTEP_BETWEEN_OUTPUT_INFO instead of NSTEP, and it runs faster when there are lots of receivers. This rev is slower when there are only a few receivers though. (589999b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: arrays for storing seismograms are now of size min(NSTEP, NTSTEP_BETWEEN_OUTPUT_INFO). (d56245e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: removed some output on stdout (now only printed by proc 0). (5f55d93)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: removed some output on stdout (now only printed by proc 0). (42f1a3d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: removed some output on stdout (now only printed by proc 0). (722901f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: removed some output on stdout (now only printed by proc 0). (838c0ef)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT,QA,devel,master: fixed a bug introduced by removing some outputs on stdout (rev1819); job could hang if process 0 had no acoustic or no elastic elements in a coupled simulation. (a200a15)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: updated the copyright information (0c7a67d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added comments. (5cf775c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: slightly modified some comments (7a8e7bc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: updated a comment about version 5.2 (c4755ce)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added agreement letter from Univ of Pau about releasing the code under the CeCILL v2+ license (d8410fe)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: replaced erf() from Numerical Recipes with erf() from Netlib. (48ca730)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added CNRS to copyright information (22df4b5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: updated the copyright information (9809459)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: renamed numerical_recipes.f90 to spline_routines.f90 to avoid copyright problem (9147f20)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: modified the spline routines in order not to use the copyrighted version from "Numerical Recipes" (e650c09)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: fixed the external declaration of erf function (2194038)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added email from Jack Dongarra as a comment at the end of the Netlib routine (2c19310)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: updated the todo list (680869e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: fixed a few bugs (mainly errors detected by ifort, with unused unallocated arrays when some options are enabled or disabled). (f0495f4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added the CeCILL license (cff8e32)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added analytical plane wave and Bielak's conditions on the absorbing edges (1cf0c37)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added IBM xlf compiler. (01562c3)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: fixed a bug (deallocate of a temporary array in write_seismograms). (4f43a56)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: cleaned the plane wave code and related Bielak conditions (35e819b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: fixed bug in syntax of MPI_ABORT (326b361)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: committed Ronan Madec's modifications for an incident plane wave using Aki and Richards' formulas, and for a canyon model for Paco Sanchez-Sesma (f332eb3)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: updated several comments (71f4457)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: Suppressed number of stations at the beginning of the STATIONS file (78a216f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: suppressed nrec_dummy (8a359cd)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: removed some unused variables (96d497b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: updated the README file (ca5369a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: updated the README file again (bfcd991)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: changed "partitionning" to "partitioning" everywhere (9a9335f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: Changed Chi in the fluid from a displacement potential to a potential of (density * displacement) in order to have physical continuity of the potential everywhere including at a fluid-fluid discontinuity and be able to handle heterogeneous acoustic media with first-order discontinuities (i.e., layers). Also added test for negative maximum value to detect if the simulation became unstable, because can happen with some compilers. (b494236)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: updated the README file (55a2fe7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added version number of the package to the manual (f0fa909)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: cleaned the implementation and normalization of collocated force source (217a1e0)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added INRIA to copyright (9d9a18a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added comments in Makefile about option -heap-arrays <size> in case of a stack overflow with ifort 10.0 and above. (ad948f4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: fixed a typo in "partitioning" (6337e5e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: - added Ronan Madec's code to use an incident plane wave (analytical expression in the time domain if below the critical angle, Paco Sanchez-Sesma's analytical expression in the frequency domain and then an inverse FFT to convert to the time domain if above the critical angle) (8393c3b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: Ronan Madec fixed a bug in his code to put an incident analytical plane wave, and also improved the definition of the initial conditions (368d73d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added a reference to the VECPAR'2008 article (c7e7dc2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: removed first names in BibTeX reference (b87522e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: updated the BibTeX VecPar reference (80e55a4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: - fixed a small inconsistency in the definition of the amplitude of a pressure source in an acoustic element - converted Paco's subroutines to Fortran95: double complex and CDEXP not allowed anymore - removed several unused variables (ee07122)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: updated some comments (3b63d44)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: removed some white spaces (2a91f67)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: fixed the amplitude problem for the source detected by Paul Cristini (my previous change did not fix the same problem) (ddeac6f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: - added an option to further reduce cache misses in the case of non-blocking MPI simulations - also fixed a memory allocation bug introduced by Ronan Madec for arrays v0 and t0 (41cc8ce)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: fixed PostScript title about mesh partitioning (9315be9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: changed permissions of files (3728130)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: updated the todo list (89dc920)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: updated the todo list again (ce999bc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: updated the todo list a third time (17ff63a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: slightly increased SMALLVALTOL to be safe (dc96d80)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the todo list (19f696d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: committed mesh decimation code (with small mesh tolerance bug already fixed by Nicolas Le Goff) (a2264ab)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: committed version 2 of the improved code developed in Barcelona based on the ParaVer analysis performed with Jesus Labarta (71ed68b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: committed version 3 of the improved code developed in Barcelona based on the ParaVer analysis performed with Jesus Labarta (e5b505a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: committed Cuthill-McKee subroutine (eb7debf)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: cleaned the source code, following the commit of version 3 developed in Barcelona; done cleaning everything except specfem2D.F90 (046d4c0)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: cleaned specfem2D.F90 (fb8623f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a bug from a test on ipass (NOTE : if you want to run coupled acoustic/elastic simulations or use absorbing conditions, revert to revision r12250 ). (eff5db8)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: a few changes on the communication scheme - communications are no longer overlapped, as the merging of the computation on inner and outer elements will make it irrelevant. - persistent communications were replaced by isend and irecv, as the trace tool MPITrace does not yet instrument those calls. - the send and merge phases were merged, as it should be possible to come up with a better communication scheme (maybe execute them in a certain order) and easier to implement it if those two phases are merged in one subroutine. (f12304a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: merged computation on inner and outer elements. Changes on CutHill McKee to invoque it only once are under way. (7afd49b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: applied Cuthill-McKee on whole domain. ACTUALLY_IMPLEMENT_PERM_WHOLE should be set to true (in constants.h) in order to activate it. (1858488)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed a path in the Makefile for traces using MPITrace as its install directory was moved. (76092cd)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed some comments in the Makefile (df1c863)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed small bug in reordering of ibool in version 4 (df114ae)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added -xP option for Intel ifort (103e21a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed the order in which the ACTUALLY_IMPLEMENT_PERM_WHOLE is tested when implementing the Cuthill-McKee permutation (b527118)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a flaw in plotpost.F90 detected on MareNostrum (XLF compiler) : multiple allocate/deallocate caused the job to hang. The arrays concerned are now allocated once and for all in the main unit. (ccab588)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a bug in compiling with scotch partitioner : a variable had the same name as a constant. (632d491)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added MPI flags for Intel ifort (f7c646c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a bug concerning absorbing condition and Cuthill-McKee : it is now okay to use absorbing conditions along with a Cuthill-McKee reordering of the elements. (0032ab5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a bug concerning absorbing condition and Cuthill-McKee : it is now okay to use absorbing conditions along with a Cuthill-McKee reordering of the elements. (1463c03)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: previous commit message should read as follows : "fixed a bug concerning fluid/solid coupled simulations and Cuthill-McKee : it is now okay to run fluid/solid coupled simulations along with a Cuthill-McKee reordering of the elements." (f820780)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed the if(myrank == 0) bug in MPI: all the processors used to print to the screen. also improved several other details in the process. (7a8f4da)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a truncated line. (c1aa2ea)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a bug concerning acoustic free surface and Cuthill-McKee : it is now okay to have an acoustic free surface along with a Cuthill-McKee reordering of the elements. (781e12e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: added -ftz option for Intel ifort compiler; it is *critical* for performance (c19f87a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added option -diag-disable vec for Intel ifort compiler (dc4b8fa)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed -diag-disable vec back to -vec-report0 for Intel ifort for compatibility with version 9 of the Intel compiler (14e0931)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the compiler options (6796009)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: Modification of SPECFEM2D version 5.2 to include (1) Biot poroelastic equations and (2) adjoint method. (cb13494)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: New files needed for (1) Biot poroelastic euqations and (2) adjoint method. (82f2b5e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: create_color_image.f90 modified for cluster. (87b1d2b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: Corrected acoustic kernels and bugs (f3e88fb)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: Bugs fixed to save last frame of acoustic domain (799c9f0)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: Bug fixed for acoustic rmass (26c1046)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed all calls to MPI_ISEND() to MPI_ISSEND() to improve performance, as suggested by www.idris.fr (fbfe5a6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: Correction of subroutine names length in part_unstruct.F90, which was incompatible with ifort compilation. (4e7cc4e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: Save acoustic potential for adjoint source calculation (76f38d6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: correction of adjoint source in compute_forces_acoustic.f90 (c4cd9f2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: fixed a small problem in the PostScript routine: the code did not compile in the serial case because of an undeclared variable; it also gave several warnings about unused variables (512dd33)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added printing of the total number of time steps and also of the percentage of time steps already computed (9d01657)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added detection for source ans receivers for external meshes. Par_file has changed. (8ce2c31)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: Bug fixed - Unstructured meshes correctly read now - Thanks Hejun. (8dd4bf7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: Yang : allow several sources (148189f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: Yang : irregular mesh files now include a special file for the receivers. This file must be present in Par_file. (0866df5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: Solved some compatibility bugs between multiple sources and irregular meshes. (bb4c2a2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: Yang : compute_forces_solid corrected (51498ec)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: bug fixed with nxread/nzread (cf581d9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: bug fixed with compute_force_fluid and multi sources (701a29c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: creation of CMTSOLUTION for BIOT2D to handle multiple sources (3aaf82b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: example of CMTSOLUTION file in DATA (db57e1a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: added comments (13f1615)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: BIOT2D : bugs on coupling fixed + possibility to save the acoustic potential for adjoint calculation (10fa7d3)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: BIOT2D : modif plotpost to plot all the sources (9e645ec)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: BIOT2D: modif input files (e44bb77)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: BIOT2D: updated poroelastic kernels (primary, density-normalized, wave-speed) (6d30031)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: BIOT2D: bugs fixed for poroelastic kernels (fc781fd)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: BIOT2D: bug fixed on poroelastic wave-speed kernels (b5944f6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: BIOT2D: corrected bug on bottom and top forces saved to reconstruct the forward wavefield for adjoint calculations. (15cccb2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: BIOT2D: corrected specfem2D.F90 to account for free surface enforcement for the backward acoustic wavefield. (6dcd739)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a description of two of the database files: "canyon_absorbing_surface_file" and "canyon_free_surface_file" (57b0dba)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the todo list (1bcd585)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the README file (699b95a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added assert to check that enreg_surf is set to false when using external meshes. (968cc8b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: merged more general attenuation (quality factors can now be given for each spectral element rather than for the whole mesh only) developed by Kasper van Wijk and Dylan Mikesell. (c9e9c23)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a few small problems in the code to handle quality factors that can vary between elements (e9e6232)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the manual (bf15f56)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added the list of main developers (694fe82)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: BIOT2D: Heaviside source time function error fixed (0104dbc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: bug detected: for now the implementation of an initial plane wave does not work when MPI is used; therefore I added an exit statement when both options are used. We will remove it when we find and fix that bug. (39a4cd9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed the bug detected by Steve Smith for initial plane waves: their implementation did not work in MPI, only in serial mode. (2ac79f6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: moved some variables that are used only in the case of MPI (1d9b99b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: BIOT2D: corrected error on elastic/poroelastic interface detection, added viscous damping for poroelastic rheology [see Morency & Tromp, GJI 2008 for details] using memory variables (similar to anelasticity). (0f51f3c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed missing "myrank" argument in define_external_model (70d3776)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: switched to a more logical order for the arguments to subroutine define_external_model() (615cdad)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: version SPECFEM2D + BIOT, waiting for merging (e671a07)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: MPI ok for forward (coupled or not) calculations + define_external_model.f90 updated (myrank) (eae71f1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] BIOT, QA, devel, master: MPI ok with adjoint calculation (b979fb5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Merging with BIOT (949102c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: Merging BIOT (b7e6d33)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Merging BIOT - end (12edeba)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Merging BIOT: modif write_seismograms.F90 to write acoustic potential in case of adjoint calculation (f465c3a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a few lines about the analytical code of Berg and If to the manual. (2924f5c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Coupled simulations acoustic/elastic/poroelastic for unstructured meshes OK (90b4c95)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Yet another bug fixed with the coupling (after Yang). (3778430)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Correction on gmat01.f90 and new Par_file. (a5ecfe5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: Another fix (6afcbf3)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: New par_file (668d80d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Fix averaged displacement. (7519a1d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: - converted copyright information in headers from version 5.2 to version 6.0 - fixed the length of some variable names that were longer than 31 characters - updated the todo list (93139a2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Coupled elastic/poro fixed for unstructured meshes. Cleaned unused variables. (fd829a3)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: merged the two readme files (b7db267)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the readme file (231340a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the header and copyright information (53e12dd)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a white line (5bbaf8e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Fixed a bug in specfem2D.F90 on plotting diplacement ps files during forward calculations. The adjoint displacement filed was wrongly entered. Thanks to Ali Can BAKIR for pointing that out. (b722a8a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Fixed bug on acoustic kernels calculation. kappa & density called when building the kernels had wrong indices. Thanks to Yang Luo for pointing it out. (1f1cb88)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Added SH (membrane) waves calculation. Also fixed some bugs related to acoustic kernels. (623759c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Added SH (membrane) waves calculation (only for elastic media), which yields to a new line in Par_file to specify which kind of calculation you are running: P-SV or SH. iRead the REAME file for more informations. Also fixed some bugs related to acoustic kernels. (bbf551f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Changed the flag for P-SV/SH simulations. It is p_sv = .true. or .false. (9ff514b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Fixed normal signs for absorbing boundaries. Thanks Yang Luo. (007622a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Fixed MPI calculation for P-SV & SH. Dimension is now 3 for elastic variables in assemble_MPI.F90. (3b81512)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Fixed one more thing on elastic/poroelastic boundary conditions. (008614e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Corrected calculation of reconstructed poroelastic field for adjoint calculation. (fbffabd)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Corrected poroelastic kernels output files (snaphots_***): density normalized and wavespeed kernels were written in wrong files. (b2fa292)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Fixed issues with adjoint sources when using several receivers located in different materials (elastic/poroelastic/acoustic). (7fe2009)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Minor image output correction. (de6f73a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Modified detection of free surfaces for acoustic case and regular mesh. Only the top surface was detected. Now all the 4 surfaces are set to free unless absorbing condition is prescribed. (05a1382)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: From Yang Luo: - Hessian calculation done for iterative problems in elastic/acoustic media. The two first columns in snapshot_rhop_alpha_beta and snapshot_rhop_c are not x and z coordinates anymore. - model_velocity.dat_output is a new file which must be situated in DATA if one is using assign_external_model, it reads: iglob, coord, coord, rho_local, vp_local, vs_local. If assign_external_model is .false. then at the end of a run model_velocity.dat_output is created. (e27af9c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Fixed flag for attenuation and anisotropic calculation with p_sv = true, following Dylan Mikesell email. (5e3fd14)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Suppress an extra field not needed. (b295702)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Fixed issues with adjoint sources when using several receivers located in different materials (elastic/poroelastic/acoustic). (1bd2d42)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: modificated the code to not pass unallocated arrays as arguments and other modifications to prevent runtime errors or warnings (a330bab)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed two useless lines (3c62348)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: restored the sum for the rotation angle, added a comment explaining why, and added a stop statement if anglerec is greater than zero and receivers are supposed to be oriented along the normal to the topography surface (ea7d6de)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Corrected the unit of "anglerec" when using rec_normal_to_surface = .false., that is, replacing cosrot_irec(:)=cos(anglerec) by cosrot_irec(:)=cos(anglerec_irec(:)), where anglerec_irec(:) = anglerec *pi/180 is in radian. (527c579)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the README file (6ebf601)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a comment about the units for the components of a moment tensor being different in the 2D and the 3D codes (06a3f94)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: renamed DATA/CMTSOLUTION to DATA/SOURCE (because that file is not at all in the classical CMTSOLUTION format, and the units for the moment tensor source are N.m, not dyne.cm) (f47d199)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: modified anisotropy, added attenuation and anisotropy for external models, fixed some bugs, put some parts of specfem2D.F90 in 3 new routines and added an ifort flag to avoid optimisation loss. (cc1f80b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: - Force source position is now interpolated, similarly to moment tensor source & receiver locations - For adjoint/kernels calculation the lastframe file is opened at the end of the first time loop leading to a clean reconstructed forward wavefield (Yang Luo) - Kernels are now written at the local level (i, j, ipsec) (8d1601d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Created get_poroelastic_velocities.f90 to compute cpI, cpII, and cs function of the source dominant frequency, include low and high frequency domains (c6a0140)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: started to change the copyright information (414fd6a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: done updating the copyright information (80a82fc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Initialized all_anistropic flag to .false. Corrected acoustic case displacement seismograms in p_sv case. (c89c4ee)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Corrected the position where the force source was added, following Ali Can Bakir from Purdue email. It has been moved before the MPI assembling. Corrected for acoustic, elastic & poroelastic. (0a0cf47)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Corrected bug regarding generating images using pressure as the variable, following Paul Cristini email. (736933e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added back the correct formula for the Ricker source time funtion (which is second derivative of a Gaussian) (b84178d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added comments about instabilities in the poroelastic case when non regular meshes are used (98cfa13)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: modified assemble_MPI.f90 to be able to compile the package with gfortran and mpif90 (84de77e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Replaced isolver & save_forward by SIMULATION_TYPE & SAVE_FORWARD to mimick the 3D code. Checked with elastic SS kernel OK. (7f6ef6f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: set output_postscript_snapshot = .false. by default to avoid creating huge PostScript files (usually for huge meshes it is better to display GIF images only) (df47b40)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated some comments (7416d4c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed old unused constants for a copper crystal (fada480)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed warnings in Gfortran related to the order in which some variables were declared (8801d40)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed IENERGY to IOUT_ENERGY (9c130c1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: increased the value of max_neighbors (1f42486)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: moved two parameters from constants.h to DATA/Par_file: OUTPUT_ENERGY and READ_EXTERNAL_SEP_FILE (fd662b2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added support for 9-node elements in external meshes (2bfe491)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: renamed directory DATA/unstructured_fluid_solid_test (3eecc70)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed -override-limits option from the Intel ifort Makefile (6314adf)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed a comment about instabilities in the poroelastic case (a08b651)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a comment about discontinuous Galerkin to the manual (8b7902a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated BibTeX references (ffac854)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated BibTeX references in the README file (ea92f72)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a sentence about the GiD mesher. (a640016)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed typos in the README file (6cd3406)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed the stop statement corresponding to "Number of control nodes must be equal to four when reading from external mesh" because 9-node external meshes are now supported (d6cf436)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: - fixed a problem when running 9-node external meshes in parallel (bug in the call to domain decomposition) - fixed a bug in display of poroelastic properties (another small bug remains, Christina will fix it) - removed support for METIS, use SCOTCH instead - added source code of SCOTCH - made a variable name shorter than 31 characters for poroelastic media - fixed a bug in the title of a postscript file in checkgrid.F90 - updated the Makefile - updated the manual (1012901)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added Paul Cristini's example of an external 9-node mesh (c9a2a34)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: commented the SCOTCH line by default in the Makefile (in order to have a serial Makefile by default) (03fc76d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed METIS option from DATA/Par_file (b921f4c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: now always use the default partitioning strategy of SCOTCH, therefore removed the partitioning strategy line in DATA/Par_file (4d19a84)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the README file (5cc1d12)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Corrected a bug for poro/elastic coupling. Checked with Paul Cristini mesh. Added definition of iglob_source for a force which is needed in the loop on force_normal_to_surface. (20f9c3d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: improved one of the sentences (6b39d62)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added acknowledgements to Paul Cristini from LMA (Marseille, France) in the README file for carefully testing v6.1 and helping us locate and fix several important bugs (14ba9dd)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Corrected the division by zero issue for the qualitify factors when the fluid is inviscid. In this case the attenuations and inverse quality factors are equal to zero. (383c04e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: New file, without the 'chris check' output. (5c3236e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added history and list of developers to the README file. (6ca2397)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added Python script called SEM_save_dir.py (a.k.a. SEMsauv) written by Paul Cristini (1e4b3d2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added computation of date and time at which the run will finish. Switched from f95 to gnu style for GNU compiler in order to support system calls. Removed old debugging information in write_seismograms.F90. Deleted PNM images from create_color_image.f90, kept GIF format only. (52dc60a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: converted Par_file to the new format; fixed a typo in the Makefile (1282ba5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: moved decimate_mesh.f90 from DATA to UTILS (86012b0)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the README_MANUAL.txt (50c3eda)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a bug about boundary arrays that were not allocated when attenution is on but absorbing boundaries are off (4d3241f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a typo in a comment (d9bd385)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: suppressed two useless print statements (9e4f30b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a few typos (7c89319)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: renamed two files to avoid confusion between poroelastic routines and elastic routines (4b1b551)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added Par_file and SOURCE file for the 2D attenuation benchmark of Jose Carcione (613d7dc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added interfaces_attenuation_analytic.dat (c644d62)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: renamed compute_forces_elastic to compute_forces_viscoelastic (f1ebf6f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed elastic to viscoelastic in the name of a subroutine (dd6e7e7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added Par_file_unstruct_CARL (2526cd7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: moved Par_file_unstruct_CARL to Par_file_unstruct (e669afa)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a comment about ImageMagick (fa421aa)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: SH caluclation: uncommented a series of lines in compute_forces_viscoelastic.f90, which were needed for SH calculation. Thanks to Carl Tape for pointing out the issue. (d8cb076)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Built an EXAMPLES directory with four different examples of both simple "internal" meshes (from meshfem2D) and external meshes. Other files remain to be sorted into formal example directories. Other minor changes are as follows: 1. specfem2D: Reset kernel gridpoints to be written, undoing a temporary change. 2. specfem2D: For the source.txt output, switch columns 1 and 3, so that col 1 is absolute time, which is consistent with the output seismograms. 3. specfem2D (calling plotpost): Plot the station locations that are actually used (x_final_receiver, z_final_receiver), not the target stations (st_xval, st_zval). 4. meshfem2D and specfem2D: Change the output file name STATIONS to STATIONS_target, since these are target stations. 5. locate_receivers: Write the file STATIONS, which lists the actual station locations that are used. 6. recompute_jacobian: Before exiting due to negative jacobian, list the index of the (first) problematic element. 7. chec kgrid and plotpost: Changed vertical axis labels from Y to Z. (466990b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Changed (x, y) to (x, z) comment in interfaces files to agree with (nx, nz) as in Par_file. (b218e50)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: renamed DATA_to_sort to DATA_to_sort_older_examples (197c23d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: use a higher frequency source in the default example in order to have a better looking output (sharper wave fronts) (b93a032)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added an OpenDX to display mesh elements with a negative Jacobian, to help locate and fix them (94c7ec2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: replaced scotch_5.1.10b with scotch_5.1.11 (96a7c57)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a print statement to print the list of elements that have a negative Jacobian (f37564a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a program to check the quality of an external mesh (a864c30)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a stop statement in the new routine to check the quality of external meshes (59788d7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: renamed check_mesh_quality_Gmsh.f90 to check_quality_external_mesh.f90 (d4318ff)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: now generate smaller OpenDX mesh quality files (b1490e9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a problem with found_a_negative_jacobian (was used before it was defined when the mesh has no element with a negative Jacobian). also now use thiner lines in Postscript display (0 setlinewidth, which draws the thinest line that can print on a given device). (9ef4c5a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added explanations about how to control the quality of an external mesh to the manual (db4c31d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: fixed a typo (3d43f49)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added the definition of dummy values of Qp & Qs when reading an external velocity and density model with no attenuation (81ed489)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added commas to some print statements to make them clearer (8c702ee)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: adds configure script capabilities; adds manual in doc/USER_MANUAL to SPECFEM2D package (12695db)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the list of authors (9bbacac)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a comment about Gmsh support added by Paul Cristini (4afc9ad)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed count_bot to count_bottom (1c524c8)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: moves examples to SPECFEM2D/EXAMPLES and adds process.sh script for each to run a default simulation (188e919)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: improved a few print statements (e556c5a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a comment that was not correct about the polynomial degree (c18646e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: adds USER_T0 capability to SPECFEM2D/ to fix simulation start times (e15806a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added periodic conditions for a calculation made with Paul Cristini (b5cdb7d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a new check in the case of periodic boundary conditions (ce179ba)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: - fixed an edge effect problem in the detection of color pixels - fixed an inconsistency in the declaration of one of the new time shifts, which led to a "floating point invalid" error (e9f8915)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: updates meshfem2D; adds new files for reading parameter file (3d10f07)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: restructures some of the routines for the mesher in SPECFEM2D/; adds new files save_databases.f90 and save_stations_file.f90 (1ccc7aa)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: - improved the routine I added last week to detect and implement periodic boundary conditions - removed useless white spaces (733ec60)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: updated README files for examples; added print line in checkgrid.F90 for USER_T0 ; added symbolic link for manual (d95acb7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixes calls to exit_MPI() (40a723d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added DG references to the manual (5753d15)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a new reference by Jeroen Ritsema (2977587)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the BibTeX file (5871745)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added SOURCE files for Carl Tape's examples (2c39d4c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a bug in subroutine read_abs_surface, which reads an absorbing surface: the number of nodes that form the absorbing edge currently must always be equal to two, even in the case of 9-node elements (a55d34e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: converted comments to print statements in subroutine read_abs_surface() (bda47bb)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: fixed a typo (fd7f8f6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: cut a print statement that was too long (e7afe43)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: - fixed a bug in stf_used in the case of single precision - changed sign convention of a Gaussian plane wave, to conform to that used at LCND in Aix-en-Provence, France - added UTILS/program_compute_mean_seismograms.f90 to compute the mean value of sigma_xz seismograms for LCND in Aix-en-Provence, France (cee00ad)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: updates some variable names in SPECFEM2D/ related to sources; adds new source code files compute_normal_vector.f90, prepare_initialfield.F90, initialize_simulation.F90, set_sources.f90, read_databases.f90, prepare_source_time_function.f90, save_openDX_jacobian.f90, prepare_color_image.F90, prepare_absorb.f90 (6d6a086)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: updates source parameters in SPECFEM2D/; adds new file check_stability.F90 (8cef3f6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: updates MPI routines; adds new files get_MPI.F90, prepare_assemble_MPI.F90, sort_array_coordinates.F90 (fbe7a4c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updates parallelizations and domain counters in SPECFEM2D/ (1abdc19)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Added Abel_Brest and canyon as formal examples. (6b76534)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: moved all the source files to the new "src" directory and all the setup files to the new "setup" directory (e4c5b7d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: correct email address for Shawn Smith (1c657f3)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: updates configure script, puts compiled binaries into bin/ subdirectory; fixes problem with MPI deadlocks (c774cfc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: moves source files into corresponding subdirectories for mesher and solver; updates Makefiles and configure (004e76a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed NO_CHECK flags for Intel ifort. removed an unused variable. (67d192c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: moved Database00000_left_edge_only and Database00000_right_edge_only to directory "DATA". (953be83)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: separated internal mesh parameters from external mesh parameters in Par_file -- all Par_files in EXAMPLES will eventually need to be updated (2913ebe)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: changed variables nspec_xmin nspec_xmax nspec_zmin nspec_zmax to nspec_left nspec_right nspec_bottom nspec_top; same for ib_xmin, etc. These names reflect the more general case for an external mesh, where the left edge may not necessarily corresond to the lowest x value, and so on. (ec4842c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Commented out Yang Luo lines associated with weights for surface and line integrals, which generated x_z_weightLineX_weightLineZ_weightSurface -- this could easily be reintroduced via a new parameter. In MPI, the file can be huge and is written over by all cores. Also added commented block for writing out an ASCII file for x, z, Ux, Uy, Uz for each wavefield snapshot. (bfd1206)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: write actual source locations and actual station locations to files (SOURCE_xz.dat, STATIONS) from setup_sources_receivers.f90; updated related print statements. (f6b5ec9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: moves scotch_5.1.11 to src/meshfem2D/; updates configure and Makefile (fd2c862)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated a comment (f311949)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a typo in a comment (7db1d0f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: added new parameter to Par_file, output_wavefield_snapshot, to output ascii files of the global wavefield at the designated time steps; also changed names OUTPUT_ENERGY --> output_energy and outputgrid --> output_grid for consistency; tested MPI version (715dd27)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: reset default output_wavefield_snapshot = .false (e4b783c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: updated Par_file for all six examples to reflect recent changes; tested to make sure each one works (fd6bd27)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: testing output_wavefield_snapshot option (bee5e2d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added "sngl" within output_wavefield_snapshopt format statement to fix bug (ed5b06c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updates manual to test if the SPECFEM2D webpage works (26e08c8)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a note about using Intel icc for Scotch (5ae1c02)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed warnings in attenuation_compute_param.c and in function qromb (c85e19a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: extended routines convtime() and invtime() to work beyond the year 2020, up to the year 3000. (543e35a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the manual to cut and paste some paragraphs about Discontinuous Galerkin that I changed in the introduction of the manual of the 3D version (f6b8081)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: added GMT/perl script for plotting wavefield snapshots; added three example figures; tested all examples. (4bc802d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added kernel example for Tape2007 (e36575c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added kernel example for Tromp2005 (90359ab)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added sub-example to Tape2007 to illustrate reading in an external model (with internal mesh). (d9084a0)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: uses directory SEM/ for adjoint sources; removes trailing spaces from source code files (44ea6ea)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: adds file get_global.f90; renames npoin to nglob; fixes allocation problem in meshfem2D (fd27016)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: renames precision_mpi.h to precision.h; renames seismogram band codes from BHX/BHY/BHZ to BXX/BXY/BXZ; renames kernel file names to e.g. proc000000_rho_kappa_mu_kernel.dat; adds param_reader.c to handle more flexible parameter file formats (5b787d1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updates user manual (2a16e61)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixes a division problem in create_color_image.f90 (57f4f95)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updates version number to 6.2.0 in source code files and manual (60384ea)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: removed unused lines in fluid_solid external mesh; changed "negative" error message to "non-positive" when appropriate (5e8f107)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: deleted -qxflag=dvz because it requires handler function __xl_dzx and thus linking will fail (d60ea18)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: added UTILS/cubit2specfem2d matlab scripts for converting cubit output to specfem2d input; full example, including cubit commands, provided for the simple Tromp2005 mesh (d2bd567)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated param_reader.c to allow for multi words when reading a string (f312fcf)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: temporarily reverted the change because of compatibility issues in function calls (adf2e63)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Fix iunit in run_cubit2specfem2d.py so that it indeed corresponds the number of material ids present. (5799727)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the Gnuplot script to display energy curves (903b83a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed -fno-trapping-math because I now implement by own FTZ forcing routine in C (48de411)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: changed -O3 to -O2 by default for gfortran because of an internal error in gfortran (some versions crash with -O3 because of the number of arguments in some subroutine calls; they should not crash, but they do; reducing the optimization level to -O2 fixes the problem) (fb9d926)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added Paul Cristini's Gmsh examples (0c66ba9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added Paul Cristini's description of how to use Gmsh (5f1fb12)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added force_ftz.c and modified "configure" accordingly (ee53ced)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Dennis McRitchie fixed the multi-word value problem in the 2D version of param_reader.c (b908b86)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed -qsigtrap option for IBM xlf compiler (fbd6242)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed MPI_ISSEND to MPI_ISEND according to a suggestion by Jesus Labarta (68278fc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated PeKoLuMaLeCaLeMaLiBlNiBaTr11 (4f6e1f6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: added zero initial condition for the backward field explicitly; it was implicit before in the memory allocation statement (da48395)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added .and. .not. SAVE_FORWARD to my modification (ee8d61d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: reverted my modification because it was not correct (1e533a9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: add comments to read_cubit_boundary.m on the conditions it can be used. (fddcfbc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: More detailed instructions on how to use initial input plane waves (initialfield=true) an example is checked into EXAMPLES/init_plane prepare_initial_field is modified to allow plane wave incidence from the right (angleforce=negative vals) output snapshots are in jpg files which are easier to convert to avi movie (3f4d03b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: adds noise tomography routines (496a2fc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: adds NOISE_TOMOGRAPHY flag to Par_file (a005026)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: adds an example illustrating noise tomography with uniform spatial distribution of noise sources (1b776e9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: adds noise example to EXAMPLES/ directory (4b1bf51)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a second comment about fixing the RK4 scheme for attenuation one day. (bcd99bc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a test about read_external_mesh to fix a small bug about an unassigned variable in that case (b9814c9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed the QKappa/Qmu bug detected by Julien Barriere (we used to use Qp/Qs instead of QKappa/Qmu in the DATA/Par_file input file due to a confusion in the notations used in a 1988 viscoelasticity article by Jose Carcione). Also removed directory "NOISE_TOMOGRAPHY", which was empty. (1479d53)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Fixes compiler warnings in noise_tomography.f90 by removing unused variables (7fa345c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed directory 'NOISE_TOMOGRAPHY' to 'OUTPUT_FILES/NOISE_TOMOGRAPHY' (835e236)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: for noise tomography, provides a set of default time functions to drive the generating wavefield (d24e506)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: adds comment explaining source time functions for noise simulations (29989f0)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: fixed the plane wave code and made sure the "EXAMPLES/canyon" example now works fine; also removed useless white spaces in source files. (86250cc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed some obsolete examples (ac572de)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added directory DATA/NOISE_TOMOGRAPHY (27cbfb1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: for noise tomography, changed location where generating wavefield snapshots are written (612ab72)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: (NOT benchmarked yet) SPECFEM2D: seismograms in SeismicUnix format, acoustic kernels, inconsistent arguments fixes, minor bugs, etc. (14f13ba)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: correct relationship between adjoint potential and adjoint displacement in acoustic media. new coupling terms for the adjoint simulations (ca8924a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: elastic-acoustic coupling in adjoint simulations validated (a147b27)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed processing script for EXAMPLES/noise_uniform so that it computes both kernel contributions instead of just one (997af87)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: (SPECFEM2D) BENCHMARKED (59f6a93)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed array dimensions in the plane wave routines (one of the dimensions was increased from 2 to 3 to handle SH waves in addition to P/SV) (6defbf1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: (SPECFEM2D) warning to equivalence in SU corrected (dfc6064)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added an explanation about the time scheme we use in the code in the elastic case (e788991)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a note about the fact that the attenuation reference used in the 2D code is not the most classical (it is taken directly from classical articles by Jose Carcione though). (77078e0)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: for noise tomography, fixes weighting on ensemble forward wavefield source (e54fe49)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: for noise tomography, adds flags "save_everywhere" and "output_wavefields_noise" (d388de2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a note and more details about the attenuation problem to fix one day (4d732ac)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixes ensemble forward wavefield during third noise simulation (f2b6c11)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Add NOISE_TOMOGRAPHY = 0 # 0 = earthquake simulation, 1/2/3 = noise simulation to Par_file of various examples. (03b477b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: switch to direct access i/o for writing noise wavefields (9ed9b29)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added factor_subsample_image to subsample color images output by the code (useful for very large models). also changed "processor" to "processor core" in print statements and in comments. (56cc351)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: added write_jpeg_image and libjpeg in order to write JPEG color snapshots directly instead of using the PNM format first and then calling "convert" from ImageMagick; this is much faster in the case of large images (5a1b2c9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added two missing files for libjpeg (cd99872)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Added an acoustic-poroelastic example in EXAMPLES/acoustic_poroelastic (ad39008)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Corrected the acoustic-poroelastic coupling for adjoint simulations following the new implementation of adjoint acoustic by Yang Luo. Note: not benchmarked (d447026)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a C code by Nicolas Massacret that converts a Gmsh mesh to the right input format for SPECFEM2D (note that Paul Cristini wrote something similar in Python) (4bc9741)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a Python script written by Paul Cristini (LMA, Marseille) to convert a Gmsh mesh into the right input format for SPECFEM2D (0f4ce07)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: suppressed older versions of Paul Cristini's Python script for Gmsh (2563181)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added the path to the Python script for Gmsh to the manual (4820781)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a bug in JPEG file names: there were trailing white spaces in the file name written to disk (656f09a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: corner points used to be removed once in the absorbing boundary integrals and plane wave (Bielak and Christiano) integrals. Qinya showed that this is not needed and gives less accurate plane waves therefore I removed it. (e553519)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed Qp to Q1 and Qs to Q2 to avoid confusion, since these are just generic names (2fff10f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: converted MPI subroutine calls to upper case for clarity (0417681)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Fix bug related to back-reconstruct plane wave field (SIMULATION_TYPE=2) (7d0b122)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed light blue to white in GIF images for the undefined region above topography, to avoid visual confusion with a water layer (3dab605)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added option DRAW_WATER_CONSTANT_BLUE_IN_JPG in setup/constants.h to display a water layer as a constant blue region rather than showing the acoustic wave speed model as a grey scale. (f2c31a9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a bug that I had introduced when I commented out the corner points removed for plane waves (0bbdad6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed an obsolete (unused) version of compute_forces_acoustic() (6f695f6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: re-added the corners for initial plane waves (but not for Stacey), but carefully checking that there is no bug this time (39efe8b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: added flag USE_SNAPSHOT_NUMBER_IN_FILENAME to use the snapshot number in its file name instead of the time step; also fixed a bug with gcc: extra characters at the end of the snapshot file name. (a7e2879)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated two comments (5fd0267)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed the name of image / movie files when numbering them sequentially instead of based on the time step number, to avoid confusion. (2fd4d8f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added Paul Cristini's Python script to process JPEG movie files to change their names in order to create movies more easily based on a set of such files. (a0ab8dc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: renamed the file for clarity (d8135d2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: moved several parameters from setup/constants.h to DATA/Par_file (e44b540)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: first step of making periodic conditions more flexible (not finished yet) (458be37)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: done making the periodic boundary conditions more flexible (84e9d28)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: renamed an old directory (706344e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the IBM xlf flags (626fe57)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added Paul Cristini's script to process all DATA/Par_files to update their format automatically when new parameters are added (c13cb22)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Paul Cristini converted all the EXAMPLES/Par_files to the new format with more input parameters (201b839)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a problem detected by "valgrind" (34445eb)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: new version of Paul Cristini's Python script to process Par_files (983f174)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added -ffree-line-length-132 to the gfortran options (c889799)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added flags -Wl, -relax and -qunroll=yes for IBM xlf (977dd28)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated a comment (e13bde6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed the line length problem detected by Paul Cristini (d092fcf)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed the MPI bug detected by Paul Cristini: fluid/solid interface arrays were not allocated but used in subroutine calls when a given MPI slice had no such fluid/solid interface (afd4010)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: moved the timer to the beginning of the time loop (it used to be there, but some routines had been added in between) (0859af5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a check about the fact that one uses more than one Database file and one processus when running an MPI simulation (3b82e57)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: do not display mesh stability, mesh dispersion and mesh decomposition PostScript files if output_postscript_snapshot is off (e14c1d3)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: allow a code compiled with MPI to run in serial mode (1756c61)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed the warning given by the new version of Intel ifort (de7c145)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a division by zero problem in the attenuation routine when called from elements with no attenuation (e.g. acoustic elements) (0fe4f36)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed the limitation (to the end of the current month) of end of run estimates (79b56b8)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed flag -fpe0 for Intel ifort because it can prevent vectorization in some cases (99032a5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added detection of negative Jacobians to check_quality_external_mesh.f90 (220a745)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: added an histogram of the number of points per wavelength in the mesh; added a Gnuplot script to visualize it; fixed a bug in the calculation of the minimum number of points per wavelength and of the stability condition in the case of heterogeneous media. (c7f9eee)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added THRESHOLD_POSTSCRIPT to display mesh quality problems above a certain threshold in PostScript files (7e28bf7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a program to align mesh boundary elements with their topological description in the solver (TOP, BOTTOM, LEFT, RIGHT) (2a79a9a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a cleaned version of the 2D attenuation example from our 1999 GJI paper (Figure 16) (1122c17)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added remarks about adjoint runs and solving inverse problems (4d7a55b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a comment in the attenuation routine, and added more details about how to use EXAMPLES/attenuation (3cc4382)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: modified the text about oil industry simulations (efd0e28)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: explained how to use the new mesh sampling histograms (d763e45)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed the bug in the mesh sampling histogram when the maximum was equal to the minimum (for a regular mesh in a homogeneous medium) (1970058)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated some comments in the calculation of an initial Rayleigh wave (96e4095)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a typo in a print statement (3ef54f0)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added EXAMPLES/Rayleigh_wave and fixed a small problem in the horizontal offset of Rayleigh sources (e51f2ef)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: added an example with an incident Rayleigh wave propagating towards a crack; modified the source code in order to "manually" add a crack (i.e., some parameters are hardwired and the crack detection and handling code I added is not very flexible yet) (7e8a866)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed ADD_A_CRACK from .true. to .false. by default (fec1900)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed "receiverlines" to "receiversets" because each set can now have a single receiver if needed, thus it is not necessarily a line any more (8a773e5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: suppressed DATA/Par_file.in and DATA/SOURCE.in handled by "configure", since it was both useless and dangerous (modifications made by the user would be erased by another "configure" run in the future) (85d0bff)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: modified the wavelength sampling histogram to compute separately the S wave histogram in solid regions and the P wave histogram in fluid regions (ee53914)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: translated comments to English in my notes about the 2D attenuation "bug" (8c6471c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a description of mesh point numbering inside each element produced by the mesher (ba7bae3)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: renamed two flags to ATTENUATION_VISCOELASTIC_SOLID and ATTENUATION_POROELASTIC_SOLID to avoid confusion; also removed useless white spaces (3dfa28e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a potential format problem for the database (0faf117)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed ATTENUATION_POROELASTIC_SOLID to ATTENUATION_PORO_FLUID_PART to further clarify (49a7eaf)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added comments by Christina Morency, following a discussion with Xie Zhinan (6abbebd)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: committed new version of Paul Cristini's Python script to convert old Par_files to the new format; and used it to convert old examples that had not been converted before (5defe60)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Xie Zhinan fixed the non-causal attenuation problem of the paper of Carcione et al. (1993). Also updated the BibTeX manual. (e98a3e9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: new version of Paul Cristini's Python script to automatically update old Par_files to the new format (34c6765)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Added reference to Carcione 2007 for viscous attenuation based on memory variables (poroelastic part) (65af3f1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added Paul Cristini's Python script that implements the analytical solution for attenuation in a fluid (113c858)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: suppressed include of malloc.h in order to be able to compile on MAC OS. (612af01)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: renamed two files because Xie Zhinan fixed the two problems (6c7f7c1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the manual to describe the options one may need to change in flags.guess (498521f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed many items from the TODO list (because implemented by Xie Zhinan) (557687b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Xie Zhinan added fourth-order time schemes (classical Runge-Kutta RK4, and low-storage LDDRK4-6) and also fixed the attenuation problem from our GJI 1999 paper in the Newmark scheme (dc0ea4f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added time_stepping_scheme to all the Par_files. added EXAMPLES/semi_infinite_homo (426d9b4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: RK and LDDRK time schemes not supported for adjoint inversion, mixed elastic/poroelastic forword simulations and poroelastic forword simulations with attenuation (2cbe6a2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a warning about materials with a negative Poisson's ratio (02cc45a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the BibTeX file (aba0601)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed minor details in the LaTeX manual (281ffeb)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a comment from Christina Morency about elastic / poroelastic coupling (e70d9f2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: removed "Cray" (ef25b61)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: clarified the formulation for a possibly non-symmetric stress tensor in the case of some C-PML formulations (23bd6a8)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Paul Cristini updated the Python script to convert from Gmsh format to SPECFEM2D (974716c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added more details about "relocation truncated to fit" (687181e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a small bug when calling the routine to compute the shape functions (c2ad94e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the BibTeX file (e68c95e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed ACTUALLY_IMPLEMENT_PERM_WHOLE from .true. to .false. by default to reduce the cost / overhead at the beginning of the solver in the case of large runs (2019344)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: bug fix to avoid edge effects in pixel detection (482d740)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a clearer message when output directory does not exist (fc9e677)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed more bugs in the detection of pixel locations for color images: edge effects could occur, leading to index values outside of array ranges (e8e0755)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added my scripts to clean all the Par_files. set Cuthill-McKee sorting to .false. by default. (ae5c34f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added the missing C Delta_t / 2 term in the mass matrix for Clayton-Engquist absorbing elements (mentioned by Jean-Paul Ampuero in 2003, see the book of Hughes 1987 chapter 9). Zhinan Xie also added a spring to further stabilize the Clayton-Engquist absorbing conditions. (a10efca)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added support for Guenneau simulations (72eddd7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: commented out a print statement (fc322ab)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a small bug in the initial plane wave in the case of MPI (5fd25d4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed one more bug in color images: extra parameter in one of the function calls (09d6ff4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a typo in a comment in a Fortran code. translated the output of a Python script from French to English. (5deb695)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: clarified a comment (e47a636)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed the MPI problem in the assembly of the new Stacey mass matrix (1b703e8)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: modified USER_T0 in the Tromp2005 and Tape2007 examples; also updated the instructions for these examples. added a few 'quick test' lines to the main README (79b5adf)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: merged the to-do list into that of SPECFEM3D in order to keep a single to-do list for all the flavors of SPECFEM (fc7bd8a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a note about the merged to-do list (a7a0b81)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: better IBM compiler options. also updated the manual (7d2afb2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added Zhinan Xie to the list of developers (f5b09fd)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a description of anisotropy (eee1863)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed the description of anisotropy (c3a7aeb)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed comments about the non symmetric form and fixed a small bug of that non symmetric form in the anisotropic case (c072cf5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: improved the way the stress tensor is made symmetric (8cd1d91)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: check the maximum possible size of a JPEG image (9610f0d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: no need for argument myrank in define_external_model(), as suggested by Paul Cristini (e0e2e6e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: set some uninitialized variables to zero (4d2f6a0)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated some references in the manual, and fixed a statement that was not fully correct in the PDF file of the time scheme we use (8f130bc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed the Q = 0 bug in define_external_model.f90 (5e52da4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: minor improvements made in the context of the definition of the Munk velocity profile (6ffe2b0)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Fix up configure.ac version and add svn:ignores. (5f57eba)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: created all the new parameters requested by Paul Cristini in DATA/Par_file. Not all of them are fully implemented yet, but the data structure is ready and I will implement them soon. (5c9752b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: moved the JPEG section before the PostScript section (dd02de1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: switched to -xHost for Intel ifort (1084dab)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: more precise comment for seismotype (491a32c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: moved cutsnaps a few lines above (e3b221a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: renamed a few flags, and added "use_binary_for_wavefield_dumps" (8cb690b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: flags NSTEP_BETWEEN_OUTPUT_SEISMOS, NSTEP_BETWEEN_OUTPUT_INFO, NSTEP_BETWEEN_OUTPUT_IMAGES and NSTEP_BETWEEN_OUTPUT_WAVE_DUMPS are now correctly implemented (2d36c75)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: flags save_ASCII_seismograms, save_binary_seismograms_single and save_binary_seismograms_double now implemented (8b207e4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: option imagetype_JPEG now implemented (d3c8dc0)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: subsamp_seismos now implemented (cbdb373)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added output of time step number to PostScript vector plot sentence (f8eccca)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: options output_wavefield_dumps, imagetype_wavefield_dumps and use_binary_for_wavefield_dumps now implemented, as well as flag -DCRISTINI_DO_NOT_DUMP_FICTITIOUS_REGIONS (61679f7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: option DRAW_SOURCES_AND_RECEIVERS is now implemented (df74884)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: used Paul Cristini's script to process all the Par_files to convert them to the new format (e41a9e5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: turned PostScript output off in EXAMPLES/Tromp2005/Par_file_Tromp2005 because PostScript vector plots cannot be drawn in the SH case (2b11815)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a small bug in source and receiver symbols that could be located in part outside of color images (2e57ce9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added UTILS/recombine_all_slices_from_binary_dump.f90 to recombine all the wavefield dumps from different MPI mesh slices into a single file (removing the duplicates in the process) (527976f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added calculation and display of the total number of degrees of freedom in the mesh (0c89d16)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: adds Zhinan's pml routines (c03c91f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed NELEM_PML_THICKNESS from 4 to 3 (39e4ff6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: moved PML_BOUNDARY_CONDITIONS and NELEM_PML_THICKNESS to DATA/Par_file (ab3d3e7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: started to clean the PML code (removed old comments etc.) (c8cd8f6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added tests to check that define_external_model() does not change the element type defined in DATA/Par_file or in the external mesh that has been read (91e418a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: initialized the PML flag array (9381d7f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: reverted my change, since is_PML() was correctly initialized in the calling program (4c97e18)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: used Paul Cristini's script to add the new PML parameters to all the Par_files (86dfc13)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Zhinan Xie fixed his C-PML code (401a9e3)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed two bugs introduced by Zhinan Xie in the C-PML code: in some cases, variable anyabs_local was used without being assigned a value first (9916eb7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: renamed Nicolas Massacret's unofficial (unsupported) Gmsh conversion code for clarity (e14882d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added support for the Cray compiler (05b3dd6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: change for the Cray compiler (e971cdf)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: better explanations about DATA/Par_file (d7875d9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed two bugs in my scripts to change parameter values in the Par_files in directory "EXAMPLES" automatically (c0a71f3)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed two comments about parametric elements (82f7ff8)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed comment about Chapter 19 to Chapter 16 (6dda4ab)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added some optimization flags for Cray (9b3d5fe)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed the geometrical tolerance issue detected by Thomas Curtelin (079723b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a note about a bug that was found by Philip Knaute (b5fbf6e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a script to define adjoint sources (29361f5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a warning with Intel icc (07feabe)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: fixed the bug for MPI adjoint runs detected by Philip Knaute; also renamed STATIONS_target to STATIONS and changed the name of files created for information only, to avoid confusion (f823ae2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: better compiler flags for Cray (39c48ea)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: add pml for fluid and fluid-solid simulation. add some flags to stop using PML in poroelastic case and in mpiversion of the code. (9717ad5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: solve the conflict in set the value of PML_BOUNDARY_CONDITIONS and STACEY_ABSORBING_CONDITIONS in par_file (8c0b973)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed all the header files to version 7.0 to prepare for the release of the CPML version (764b78d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the manual to version 7.0 (faf0842)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fix bugs in part of PML implementation code when set PML_BOUNDARY_CONDITIONS=.false. (add0055)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the manual and the history of the code (e948ba0)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: renamed a file to be consistent with the 3D codes (93572de)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: rm some unused parameter in pml_init.F90 (315df31)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: suppressed warnings about variables that were too long (92953c5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed two extra parameters that made the call to invert_mass_matrix_init() crash (bd813fb)   cig_noreply at geodynamics.org
• [commit] QA,devel,master: fixed "ignoring return value of ‘system’" warning (c6837da)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: delete an unneeded variable anyabs_local (6477c44)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the manual (437332b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the icon image (daa52b7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: delete one line code used for check in invert_mass_matrix (c2b8446)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: add mpi support for elastic simulation with CPML (edb5bf8)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: rm unneeded code for checking the CPML (99ca89c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: fix minor bugs (d2a3aa5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: minor simplification of compute_forces_viscoelastic when using CPML (32c4c9c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: rm unneeded dimension defined in corner PML in the code compute_forces_viscoelastic.F90 (2cdd3c2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: rm unneeded corner variable when using PML in the code compute_forces_acoustic.f90 (2befdf2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: correct the mass matrix formulation when using PML with mpi (8eb1ab4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: rm some unneeded code when using PML in compute_forces_acoustic.f90 (6ad5754)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: rm unneeded code when using PML in compute_forces_viscoelastic.F90 (7f47b1c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: an important modification when using PML in MPI version compiled by the all checked ifort flag. The MPI_version of PML for acoustic/elastic simulation is ready (43f51fa)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: clean the code compute_forces_acoustic.f90, add some stop flag to prevent some errors come from allocate dimension (f1560bc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Simplfied the code by setting alpha_x=alpha_z=const where alpha_x or alpha_z is nonzero (9192321)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed BibTeX errors and updated a few references (9a58625)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: made PML the default (ae9aedf)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed some problems in the BibTeX file (96aa924)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed the some bugs for future use PML with external mesh (859cb40)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: delete some used variables (ce7f770)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: add first edition of supporting simulation with CPML when read_external_mesh is true (8619a7c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Paul changed the old Par_file by adding on term with CPML_element_file (c959c10)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: unified the numerical scheme for computing convolution when using CPML and futher simplified the code (bf4e3d1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Paul fixed problems in Par_file when using PML with external mesh (7e37823)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: replaced scotch_5.1.11 with latest version scotch_5.1.12b (d6c781f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: improved the sentence about mcmodel=medium (0ba1909)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added doc/how_to_properly_detect_all_MPI_or_PML_edges.pdf (7b4fea5)   cig_noreply at geodynamics.org
• [commit] QA,devel,master: Fix a bug when use PML in acoustic simulation found from the numerical results of Paul's two student loïza Bouvier and Arnaud Dubois (e91842a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a print statement (d82b62c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: avoid a useless array copy (f8424b2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a stop statement if add_Bielak_conditions and not STACEY_ABSORBING_CONDITIONS (5313832)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a typo in a variable name (269efed)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a sign problem in the Bielak conditions (4e88965)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: increased the default time step (ca860c4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: improved the 'plot_energy.gnu' script (4764080)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added UTILS/visualization/assemble_all_movie_images_ImageMagick_montage.csh (38c4240)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added "typeabs()" to prepare for handling of rotated absorbing elements in the Stacey absorbing boundary conditions (5c556cd)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the manual according to the changes made to the format of the absorbing edges (43f5eb7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: switched from angleforce to anglesource; added flexible reading of DATA/SOURCE; added possibility to use the incident field only for a plane wave (49079f8)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed the case of an incident plane P wave (5f5d056)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fix the wrong output the file name of PML_ELEMENT_FILE in specfem2D.F90 and two small bugs in other two files (e0c25df)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a border to the images (12b80ce)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed an unused variable (6de4692)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added MPI support to the calculation of total energy. Also fixed a tiny bug that I introduced a few days ago in Postscript vector plots. (b1214e0)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: better options to create the movie (9aa7aa4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed obsolete Gmsh files (8512526)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a small bug in the new (improved) Stacey conditions (dac282f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the version number in comments in the Makefile (82d6e0c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated UTILS/Gmsh/LibGmsh2Specfem_convert_Gmsh_to_Specfem2D_official.py and added EXAMPLES/Gmsh_example_serial/process_the_Gmsh_file_once_and_for_all.sh (8dafe3f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added EXAMPLES/Gmsh_example_MPI/process_the_Gmsh_file_once_and_for_all.sh (2037ae4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a PostScript display bug (a805f95)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: add Dimitri's code for getting the right index of nodes inside element, this is useful when you use external mesh to do simulation with initial field like plane wave incident case (f7d1cb6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: improved some comments in the new mesh rotation routine (1c905f9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: add mpi support for using pml with external mesh (93ec9cf)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: restored my modifications from yesterday, which had been erased by Zhinan by mistake (ce30e45)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: remove some name confusion which caused by using same array name is_pml in both meshfem2D and specfem2D but with different meaning. (b287bdd)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed -O1 to -O0 to avoid a warning with Intel ifort version 13 (6160e99)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: add few comment and remove now useless variable CPML_element_file in specfem2D (21f6589)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: move the line "allocate(is_PML(nspec))" under line 2851 "if( PML_BOUNDARY_CONDITIONS .and. anyabs_glob ) then" to avoid a error like "twice allocate the same array" (25756e9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: add a optimized factor tested by paul to modify the origin damping coefficient definition in CPML domain to achieve better absorbing efficiency (8e4739b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: add mpi support for elastic simulation with LDDRK and add ADE-CPML support with LDDRK (f651429)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: add mpi support for acoustic simulation with LDDRK (4d1b9ea)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: add ADE-CPML support with LDDRK (630e72f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: add stop flags to prevent users use standard Runge-Kutta scheme with mpi or with CPML, which are not implemented (f19a884)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: remove the unneeded read operation of CPML_element_file when using external mesh without CPML (c2d0773)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: when initial_field and add_Bielak_conditions is on, ADD_SPRING_TO_STACEY should be set to false. Because currently the code to implement initial_field and add_Bielak_conditions is not correct for ADD_SPRING_TO_STACEY is true (bf02db5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: renamed Qs and Qp to Qmu and QKappa (1ade787)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a bug when ATTENUATION_VISCOELASTIC_SOLID is .true., since currently we use non-symmetric form of stress tensor. (30ddcd9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added CPML file, which was missing (b4ea9cf)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: reduced the length of variable name rmemory_potential_acoustic_LDDRK because it was longer than the standard (ee44dc6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed i4 to i7 in the output of mesh element numbers (c6152aa)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: added salt dome example; fixed the height of element numbers in PostScript display (ec87926)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: switched to -std03 for Intel ifort (b37bff4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: add the CFL maximum values of the three schemes (Newmark, RK4 and LDDRK4-6) in the users manual (d8295ae)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Use Paul's script to add in Par_file about how to choose time step (e122527)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed the manual and also comments in the different Par_files about how to choose the time step (96e1733)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added wrapfig.sty (7d2f25c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: fixed a typo (854dfb9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the manual (95556e7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a variable that was assigned twice (70d4d36)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the small icon picture (10bfc66)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added Gmsh_example_titled_CPMLs (b31f2db)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added CUBIT and ACIS files for the salt dome model with CPML (143a46e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a PML sentence in the manual (8a7f2f1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added the geometry of the salt dome in two more formats (28d162f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Paul provide a new kind of source (eb9e6c8)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: converted the salt dome geometry model from the (x, z) plane to the (x, y) plane (7a9c86c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: improved the salt dome mesh manually (one element on the right edge has a strange shape) and made sure we have only 8 materials instead of 11 (6ab5591)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: a draft about how to input the CPML element file when using external mesh is given. An additional picture is needed to help the illustration (2b86cef)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the description of the CPML flags and also changed their value to make their definition more logical (11b4b00)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed multiply-defined labels (653b2f0)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed some CTRL-LF characters coming from a Windows editor (edbb972)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed the CPML flags to make them simpler (4bfda6d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed the name of the CPML file name to make it clearer (d81c550)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: converted the CPML flags to upper case (7282d1a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: commit some old changes for simplification of PML code (fabe3c3)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: use the new flag of pml (fd7cfbf)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: add the process file for this example (47ba7ce)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: modify the process file for example of salt_dome (9464576)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: minor change (226deeb)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed some undeclared arrays in the case of PML (30cca41)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added salt dome mesh with CPML (40fa71c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added EXAMPLES/salt_dome/CPML_homogeneous (4c38a59)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: committed the right version of EXAMPLES/salt_dome/CPML_normal/modelY1_materials_file (949efea)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added the original "grep" statement (5d4ee5d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed an extra comment (0048a0b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added UTILS/older_or_specific_versions_of_mesher and renamed another directory (866a275)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: improved comment about the STATIONS file (af55625)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added option USE_BINARY_FOR_EXTERNAL_MESH_DATABASE for the case of very large external meshes (7f24705)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added example to define the AK135F global Earth model (2d5ea72)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: better comment in the Par_file (41711c1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added NX_NZ_IMAGE_MAX for the max size of a JPEG image, and converted factor_subsample_image from integer to double precision (e102b7e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: better implementation of define_external_model(): now call the routine only once for the whole mesh instead of once for each mesh point; this is much faster for large meshes and avoids fragmenting memory by calling the routine millions of times when there are a few million grid points (02f1abe)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added check of error code of some allocate() statements (8166086)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: made option --enable-double-precision off by default, i.e. by default the solver will now be compiled in single precision, which will divide memory size by two and will also make the solver faster (dd7c0ac)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added message about the stack size that needs to be unlimited (38a5cb2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added output of total number of elements (e9008d7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: better options for Portland pgf90 (27fe655)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added -shared-intel (bad4fa5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: added pgf95 (b79e891)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Fix cubit2specfem2D.py for an additional flag in absorbing_file. (cea6520)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: solve one small bug when using single precision. (52ba41d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: initial version of titled PML commited, please becarful to use it, since the current pml_init.F90 code using to define the pml parameter do not support titled mesh. (23f654d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: solve data type inconsistency when set CUSTOM_REAL=real in viscoelastic simulation (e70a721)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: solve data type inconsistency when set CUSTOM_REAL=real in elastic/acoustic simulation with PML (3c9ed72)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: remove unused variable and add one stop sentence when using PML in SH simulation, which is not implemented yet (1951c75)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: make the size of the source and receiver symbols depend on the size of the picture using a rule of thumb (de4bf8c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: For simulation considering viscoelastic effect, replace the first order accuracy time scheme for memory variable with second order Newmark_Beta time scheme (8333e9b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: grouped some calculations (36b07e2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: clean the code a little (651f37f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: restructured and merged some loops for simplicity; also added an example showing how to force vectorization of some loops (40042c4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed FLAGS_NO_CHECK (37c9ff2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: got rid of CRISTINI_DO_NOT_DUMP_FICTITIOUS_REGIONS flag, now useless because we have C-PML implemented (369882e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added "make realclean" for SCOTCH (ac8de10)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: force creation of scotch*.h after a "make realclean" (767695d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed the "make realclean" problem detected by Paul Cristini (d6be5a3)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: one more fix regarding directories in the main Makefile for the "make realclean" problem (d527473)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed one last problem with "make realclean" (025e952)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: switched to Fortran2003 in the manual and in flags.guess (8806dcb)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: done fixing the "make realclean" problem found by Paul Cristini (my earlier fix yesterday worked with CSH but not with BASH) (71148a2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed generate_STATIONS to use_existing_STATIONS (02c2ca2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added two missing parameters to DATA/Par_file (7d1504f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: clean the code and change the computation of relaxed modulus according the Qkappa and Qmu definition in Par_file (cb10325)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: change reading of Par_file for anisotropic media (316b1a6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed a useless "if" test (03b9941)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added hidden flag PAUL_SAVE_ASCII_IN_BINARY to save the ASCII *.sem* seismograms in binary instead, to save disk space and/or writing time. we could/should move this flag to DATA/Par_file one day. (04b8d7d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a small problem when writing the source time function file source.txt: intermediate Runge-Kutta substeps were also written (b335e62)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed the blue color detection for water bug detected by Dara Farrell (2c574ac)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed underflow trapping in gfortran debugging option because underflows happen in any normal SPECFEM run (bf4855b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed authors' names from the cover (the list was becoming too long to fit) (29a98b7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: split the adjoint and backward run in elastic kernel computation (3713589)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: add pml support for elastic kernel computation (5678ccb)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: rm edge effect when using pml in elastic kernel comuptation (d19f4d3)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fix a bug for using stacey boundary condition in elastic kernel computation after adding the support for computing elastic kernel with PML (fe38a65)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added comments about how we fixed the attenuation equations that are non causal in Carcione's 1993 article. (dd666fe)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Added MAC support for the python script which processes .msh files (1677e24)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Fixed viscous attenuation for poroelastic media to suppress the error on inversion of the permeability matrix in specfem2D.f90. Modified some parameters in Par_file_acoustic_poroelastic so users can turn ATTENUATION_PORO_FLUID_PART on or off to use or not viscous attenuation. (4d8df87)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fix one bug in pml when turn on READ_EXTERNAL_SEP_FILE in par_file (f6c887b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: better flags.guess (6bdc553)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added explanations about how to use PML when READ_EXTERNAL_SEP_FILE is true (b5d2c11)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: switched from "velocity model" to "velocity and density model" (15ce72f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: add C Delta_t / 2 contribution to the mass matrix, in the case of Clayton-Engquist absorbing boundaries for acoustic simulation (c79c2b3)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: better flags.guess (7adff91)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: better flags.guess (058eefa)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: solve a bug caused data inconsistency when using LDDRK (2a83681)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: added the full reference of Wang and Texeira (2006) for C-PML; also removed useless white spaces (86af5fd)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: replaced SIMULATION_TYPE == 2 with SIMULATION_TYPE == 3 in the whole code, to remain consistent with the numbering convention used in our 3D codes (6b3d78b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a sanity check for SIMULATION_TYPE (1b3e2e6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: add PML support for viscoelastic simulation. Here the PML is not derived based on viscoelastic wave equation, but on elastic wave equation. However, when approximately Qp is bigger than 70 and Qs is bigger than 50, based on the experiment observation, we found that the PML can still keep good absorbing efficiency when use it directly in viscoelastic simulation (0756507)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: explained what is done if PML elements are viscoelastic or poroelastic (fa39f45)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added -fpe0 for Intel ifort (26b4ae7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added -ffpe-trap=invalid, zero, overflow for gfortran (3c70d16)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: switched from -O2 to -O1 for the Intel icc C compiler to avoid an optimization issue in the C attenuation routine (d0f65d7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: clearer flags.guess (e7ca9aa)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added allocate(rmemory_dux_dx_prime(1, 1, 1), stat=ier) (ca4e0b2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added MPI_REDUCE to print statements for PML and Stacey absorbing elements in order to get the right total number of elements printed to the screen when using a parallel MPI simulation (5920278)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added print statement for nedges_coupled (acoustic/elastic) (0db21ff)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: better print statements for PML (096e88c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: suppressed warnings about unused variables in my new MPI_REDUCE statements from yesterday when USE_MPI is off (52e3549)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed one last warning about an unused variable (15c45d4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: clearer stop statement in define_external_model.f90 (c4533a5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed an old (unknown) variable that I just introduced in define_external_model.f90 by cut and paste (1aab98e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed a problem in the MPI_REDUCE I implemented yesterday, in the case of MPI slices that contain no absorbing element at all (0298d0f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added UTILS/run_job_nohup.bash (7d2e9ae)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed affiliation (64b2f90)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: moved a misplaced print statement: 'Assigning an external velocity and density model...' (070d6ac)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: improved a print statement (9702075)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added action='write' to some open() statements (544b284)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: converted factor_subsample_image to double precision (it was already declared as double precision in all files but one, thus resulting in an error with some compilers) (f68c748)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a comment about the boundary condition to use on outer edges of PML elements in acoustic (fluid) layers (3df5036)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: suppressed the -fpe0 option for Intel ifort; it was making the code unstable on some Intel machines (0b30df5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: better compiler options for IBM BlueGene (0c863b4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: more detailed options for the IBM xlf compiler (f350ae0)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added EXAMPLES/CPML_absorbing_layers/CPML_layers_added_to_simple_square_with_Gmsh.geo (b0e6051)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a sentence about how to create CPML layers in Gmsh. (6eb526b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: better flags for IBM xlf (183756b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed an obsolete file (7004ecd)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: renamed an old file (deba2df)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fix small bug in defining ib_bottom, ib_top, ib_left, ib_right using in backward simulation when using Stacey boundary condition (3ddaa40)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: acknowledge Yvon Maday in the manual (6d91396)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: commit one example fluid_solid kernel example provided by Luo Yang (ed65828)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: add one line in LuoYang_fluid_soild_kernel/README file (ed920b1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: updated (simplified) the CPML flags in the manual; also fixed a typo in a directory name (fcb3a21)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: pml support for adjoint simulation in acoustic part is added (20a81ac)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: add pml support in adjoint simulation when using external mesh (7c38cd2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: fix one bug (2ce1851)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added "Stacey" to the name of current CPML examples (5259f83)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: fix one bug (0f899ae)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added flag save_ASCII_kernels to all the Par_files (cd9b800)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: add support for store kernel files in binary format (8bb13e2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a test on negative or null values of Q attenuation factor (5fc76ef)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: put the test on Cs back to zero because acoustic media have Cs == 0 (1585390)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added installation instructions for IBM Blue Gene. (8e14248)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: better flags.guess for IBM xlf (b26b675)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: remove all the "mu" terms from the expression of energy in an acoustic medium (since mu = 0 in such a medium, these terms are useless because they are multiplied by zero) (c2dcdf1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: unified syntax for endif, enddo and else if; alse removed useless white spaces (f8013a2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: change the name of some pml variables (34e1119)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: improved version of doc/time_scheme_we_use_in_the_code_from_Hughes_1987.pdf (c87acff)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: fixed a typo (65ab1d1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a stop statement if Stacey and PML are both set (8511a65)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fix one error in using undefined variable STACEY_ABSORBING_CONDITIONS (6d22060)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: modified the pml_init a bit to avoid some potential error (c555fa8)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: remove unneeded code in pml_init for checking (6be3c54)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: reduce the memory usage in case of simulation with PML (f7442cf)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: change the old pml_flag according to the new document (03a679c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: clean a little of the specfem2D.F90 (73d60ee)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fix a small bug for the generation of source.txt (56296a1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: set potential and its derivatives to be zero on outer boundary of PML to remove some potential instability problem (997f078)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: updated the manual (d773bc4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a reference about the dispersion analysis of the SEM (a9fa865)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added three Discontinuous Galerkin references (9454cb9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: fixed a typo (a878fd4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Fix recursive make calls. (045d5c8)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Use more portable sed commands. (4f0a238)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Use mpi module instead of mpif header file. (29d49cc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Fix Fortran preprocessor define options. (f888cce)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Correctly set up Fortran-to-C wrapper names. (494ce68)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Fix some inconsistent naming. (4edf579)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added logos and new cover to the 2D manual (6d49ae7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added one more logo (e2a8a1b)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: better copyright information (a94abe7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: deleted figures/Logo_INRIA.jpg (1b56d6d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: applied Brad Aagaard's patch to replace clock_gettime() with gettimeofday() on Mac OS. (85ee2b9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added three missing files for "configure" (9d187a4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fix one error of PML code in compute_forces_viscoelastic.F90 and refine the output format of plot_energy.gnu (e810d0e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: renamed UTILS/su_create_Paul_Cristini.py to UTILS/su_Seismic_Unix_seismograms_create.py (e17f55c)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: committed an improved version of UTILS/su_Seismic_Unix_seismograms_create.py from Jungrak Son (9b6a346)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fix one bug in CPML implementation when using LDDRK (5bdb9b5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: add the mpi support for using PML in adjoint tomography (a7c4ce6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added -Mvect for Portland PGI (e5e23d5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added replace_use_mpi_with_include_mpif_dot_h.pl (ba13a5a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fix one bug in LDDRK implementation for CFS-UPML (91d01b1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: allow to use variable kappa in PML for acoustic simulation (7407e64)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added UTILS/patch_from_Brad_Aagaard_to_make_Scotch_compile_on_MacOS.txt (74152ef)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: changed .bin to .su for binary files in order to clarify that Seismic Unix can be used to process or visualize them (3977964)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added Seismic Unix information (ba33a95)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: fixed a comment and the manual regarding the plane strain convention and its impact on the formula to compute pressure; I will fix the code a bit later (9a70383)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: added Ainsworth (613da03)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed an unused variable (6733737)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fixed the calculation of pressure, which was slightly incorrect in the plane strain approximation: the waveform was OK but the amplitude was slightly wrong in elastic or viscoelastic media (but OK in acoustic media) (3378b21)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: delete unused comment (a642b0d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed a useless variable (3d3eea1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: fixed the calculation of pressure in the case of an anisotropic material (it is then necessary to compute sigma_yy using additional c_IJ anisotropic parameters); updated the manual and the Par_file accordingly; added a new example: EXAMPLES/anisotropic_zinc_crystal; also removed useless white spaces (a2de91a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA,devel,master: fixed a comment (c1e4450)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added a white line to the manual for clarity (11f19a5)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed a useless comment (89546fc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: slightly modified patch for MAC OS sent by Francois Pellegrini (4b4183d)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: reverted to .bin instead of .su for binary files, following emails received from users and in order to remain general (16b0e5a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed mcmodel=medium, which is useless when dynamic memory allocation is used (b7b69aa)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: removed the sentence about -mcmodel from the manual (19728fc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added --shell-escape to pdflatex (b70b366)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: added three files in SPECFEM2D/UTILS/Ra_Cleave_record_pressure_in_addition_to_displacement (0d46141)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Begin to clear the code of PML. Clear the code of subroutine define_PML_coefficients (3045ed8)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: clean the pml_init.F90 code (89a7825)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: remove ADE formualtion of viscoelastic wave equations using Newmark scheme to update memory variables. Add convolutional formulation of viscoelastic formulation and using second order convolutional scheme to update memory variables. Clean the code asscociated with viscoelastic simulation (841508a)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: update one comment (f7f25ba)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: remove unused variables (3d9f053)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: clean the pml code for elastic simulation (cf33963)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: change the pml flag (a6d5491)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: clean the code compute_forces_viscoelastic.F90 and pml_init.F90 (233966f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: clean the pml code for acoustic part (26a936e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: clean the code compute_forces_acoustic.f90 (471fc6e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: update several comments (431c5f2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fix one error in invert_mass_matrix.F90 and clean the code of compute_forces_viscoelastic.F90 (6e74dfd)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fix the time_n computation needed in implementation of ADE PML formulation with LDDRK (c24f9f1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: put back one line back to make sure that NSPEC_PML is not zero (5c864d6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: examples submodule (9b5cbb9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Import .gitignore from SVN. (283c7c6)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Merge pull request #2 from QuLogic/git-transition (fb2a043)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fix one error in compute_forces_acoustic.f90 (ced24b4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Merge pull request #3 from xiezhinan/devel (1ac8acc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Merge pull request #4 from geodynamics/QA (e61cc44)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Merge pull request #5 from geodynamics/devel (ed58446)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Add source number 7 (2127f37)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Merge pull request #6 from pcristini/master (d43e73e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fix one error in specfem2D.F90 (2743b55)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Merge pull request #7 from xiezhinan/devel (4ae2323)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Merge branch 'master' into QA (75fcabc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Merge pull request #8 from geodynamics/QA (209f359)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Merge pull request #9 from geodynamics/master (d3c1890)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Merge pull request #10 from geodynamics/devel (14376b1)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: fix error concerning fluid-solid adjoint inversion (406a373)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: clean the code for next change (ec49617)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Merge branch 'devel' (ee914a2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] master: Merge branch 'devel' (22b9882)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: clean code and fix fluid-solid forward simulation (2b52eda)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Merge branch 'devel' to includ new modification (48d98ab)   cig_noreply at geodynamics.org
• [cig-commits] [commit] QA, devel, master: Merge pull request #12 from xiezhinan/devel (6c511c4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] master: Merge branch 'devel' (6810221)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Use more efficient Field::zeroAll() rather than Field::zero(). (83238c2)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Create local index set for cells associated with material. (9880964)   cig_noreply at geodynamics.org
• [commit] knepley/upgrade-petsc-interface: Topology+Faults: When using ‘depth’ to check for an interpolated mesh in parallel, need to account for −1 on empty meshes (06c0bcc)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Topology: Took groupField out of createInterpolate() interface (94a0fc3)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Topology: Check for empty material-id label (14e3c72)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Topology: Reordering now works in parallel (6886b45)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Faults: Fixed unittests for new interface (ecf2a17)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Fixed one case of handling NULL PetscIS after DMLabelGetStratumIS(). (f0259ae)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Fixed some parallel issues. (f0a3d32)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: More ignores (7f05bb7)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Clean up of refinement (fix memory leak). (0de634f)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Fixed another potential use of NULL index set in parallel runs. (ed24816)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Add number of levels refinement setting. (fc9bae9)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Create path (if necessary) for output files. (9c58e45)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Improvement to creating output directory if it doesn't exist. (8328801)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Corrected coordinates in spatial data file. (f4faf94)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Fault Test: Fault meshes now have correct coordinates (0b72e51)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Visitor: Now create an index for closure of coordinates and fields (0b9b0aa)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Topology: Added optimizeClosure() to visitors - Creates a closure index associated with the DM only if one does not already exist (a9a1eb4)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Optimization: Call optimizeClosure() for every visitor that calls getClosure() except the VisitorSubmesh (5b37d1e)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Minor cleanup of optimizeClosure(). (a0bd2c3)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Converted shell script for running examples to Python script. (6fe83b0)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Flush stdout in script running examples. (361dd21)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Update PetscMalloc3() call for interface changes. Updated test data. (e028746)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Enabled C++ unit test for hex8 refinement w/fault. (483d179)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Begin improvement of full-scale tests (quad4). (176b7be)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: General: Changes DMPlexGetCoordinateSection() to DMGetCoordinateSection() (a2cf235)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: General: Changes DMPlexGetCoordinateSection() to DMGetCoordinateSection() (7ca6198)   cig_noreply at geodynamics.org
• [cig-commits] [commit] knepley/upgrade-petsc-interface: Fault tests: corrected group sizes - face 2 has one duplicated edge, so 3 vertices and 2 edges extra - fault just duplicates the whole face, so 4+12+9 extra (993cc75)   cig_noreply at geodynamics.org
• [cig-commits] r22980 - in seismo/3D/SPECFEM3D_GLOBE/trunk/src: auxiliaries cuda meshfem3D shared specfem3D   danielpeter at geodynamics.org
• [cig-commits] r22981 - in seismo/3D/SPECFEM3D_GLOBE/trunk: EXAMPLES/global_s362ani/DATA src/meshfem3D src/shared src/specfem3D   danielpeter at geodynamics.org
• [cig-commits] r22983 - in seismo/3D/SPECFEM3D_GLOBE/trunk: . src/cuda src/meshfem3D src/shared src/specfem3D   danielpeter at geodynamics.org
• [cig-commits] r22982 - seismo/3D/SPECFEM3D_GLOBE/trunk/src/specfem3D   lefebvre at geodynamics.org
• [cig-commits] r22984 - seismo/3D/SPECFEM3D_GLOBE/trunk/src/auxiliaries   lefebvre at geodynamics.org
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• [cig-commits] commit 2207 by buerg to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2208 by heister to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2209 by buerg to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2210 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2211 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2212 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2213 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2214 by heister to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2215 by heister to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2216 by heister to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2217 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2218 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2219 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2220 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2221 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2222 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2223 by buerg to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2224 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2225 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2226 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2227 by buerg to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2228 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2229 by heister to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2230 by heister to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2231 by heister to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2232 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2233 by heister to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2234 by heister to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2235 by heister to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2236 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2237 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2238 by buerg to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2239 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2240 by buerg to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2241 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2242 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2243 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2244 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2245 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2246 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2247 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2248 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2249 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2250 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2251 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2252 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2253 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2254 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2255 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2256 by heister to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2257 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2258 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2259 by bangerth to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2260 by heister to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2261 by heister to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2262 by heister to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2263 by heister to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2264 by heister to /var/svn/dealii/aspect   dealii.demon at gmail.com
• [cig-commits] commit 2265 by heister to /var/svn/dealii/aspect   dealii.demon at gmail.com

Last message date: Mon Dec 30 06:44:47 PST 2013
Archived on: Mon Dec 30 06:44:51 PST 2013

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