[cig-commits] r21373 - in seismo/3D/SPECFEM3D_GLOBE/trunk: DATA EXAMPLES/benchmarks/prem_ani_noocean_Q_Cowling_Bolivia_9s/SEMD/DATA EXAMPLES/benchmarks/prem_ani_noocean_Q_Cowling_Vanuatu/SEMD/DATA EXAMPLES/benchmarks/prem_iso_noocean_Q_Cowling_Vanuatu/SEMD/DATA EXAMPLES/global_PREM_kernels/amplitude/DATA EXAMPLES/global_PREM_kernels/traveltime/DATA EXAMPLES/global_s362ani/DATA EXAMPLES/noise_examples/global_long EXAMPLES/noise_examples/global_short EXAMPLES/noise_examples/regional EXAMPLES/noise_examples/test_global EXAMPLES/noise_examples/test_regional EXAMPLES/regional_Greece_small/DATA EXAMPLES/regional_MiddleEast/DATA EXAMPLES/small_benchmark_run_to_test_a_new_machine

elliott.sales.de.andrade at geodynamics.org elliott.sales.de.andrade at geodynamics.org
Sat Feb 16 22:50:26 PST 2013


Author: elliott.sales.de.andrade
Date: 2013-02-16 22:50:25 -0800 (Sat, 16 Feb 2013)
New Revision: 21373

Modified:
   seismo/3D/SPECFEM3D_GLOBE/trunk/DATA/Par_file
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/benchmarks/prem_ani_noocean_Q_Cowling_Bolivia_9s/SEMD/DATA/Par_file
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/benchmarks/prem_ani_noocean_Q_Cowling_Vanuatu/SEMD/DATA/Par_file
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/benchmarks/prem_iso_noocean_Q_Cowling_Vanuatu/SEMD/DATA/Par_file
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/global_PREM_kernels/amplitude/DATA/Par_file
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/global_PREM_kernels/traveltime/DATA/Par_file
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/global_s362ani/DATA/Par_file
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_long/Par_file_NOISE_1_attenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_long/Par_file_NOISE_1_noattenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_long/Par_file_NOISE_2_attenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_long/Par_file_NOISE_2_noattenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_long/Par_file_NOISE_3_noattenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_short/Par_file_NOISE_1_attenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_short/Par_file_NOISE_1_noattenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_short/Par_file_NOISE_2_attenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_short/Par_file_NOISE_2_noattenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_short/Par_file_NOISE_3_noattenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/regional/Par_file_NOISE_1_attenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/regional/Par_file_NOISE_1_noattenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/regional/Par_file_NOISE_2_attenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/regional/Par_file_NOISE_2_noattenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/regional/Par_file_NOISE_3_noattenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_global/Par_file_NOISE_1_attenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_global/Par_file_NOISE_1_noattenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_global/Par_file_NOISE_2_attenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_global/Par_file_NOISE_2_noattenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_global/Par_file_NOISE_3_noattenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_regional/Par_file_NOISE_1_attenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_regional/Par_file_NOISE_1_noattenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_regional/Par_file_NOISE_2_attenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_regional/Par_file_NOISE_2_noattenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_regional/Par_file_NOISE_3_noattenuation
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/DATA/Par_file
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_MiddleEast/DATA/Par_file
   seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/small_benchmark_run_to_test_a_new_machine/Par_file_this_example
Log:
Fix example Par_files.

I only added the missing parameters so that things don't crash because
of it. I have no idea whether the *other* parameters are still correct.
I also made the comments the same so that the diff would be smaller.

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/DATA/Par_file
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/DATA/Par_file	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/DATA/Par_file	2013-02-17 06:50:25 UTC (rev 21373)
@@ -36,7 +36,7 @@
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = s362ani
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        = 15.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .false.
 MOVIE_VOLUME                    = .false.
@@ -121,4 +121,3 @@
 # output kernels on a regular grid instead of on the mesh points
 SAVE_REGULAR_KL                 = .false.
 
-

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/benchmarks/prem_ani_noocean_Q_Cowling_Bolivia_9s/SEMD/DATA/Par_file
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/benchmarks/prem_ani_noocean_Q_Cowling_Bolivia_9s/SEMD/DATA/Par_file	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/benchmarks/prem_ani_noocean_Q_Cowling_Bolivia_9s/SEMD/DATA/Par_file	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,6 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
+NOISE_TOMOGRAPHY                = 0        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .false.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -14,8 +15,8 @@
 GAMMA_ROTATION_AZIMUTH        = 20.d0
 
 # number of elements at the surface along the two sides of the first chunk
-# (must be multiple of 32 and 16 * multiple of NPROC below)
-NEX_XI                          = 512 
+# (must be multiple of 16 and 8 * multiple of NPROC below)
+NEX_XI                          = 512
 NEX_ETA                         = 512
 
 # number of MPI processors along the two sides of the first chunk
@@ -23,15 +24,21 @@
 NPROC_ETA                       = 16
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362wmani, s362ani_prem, s29ea
-MODEL                           = 1D_transversely_isotropic_prem 
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
+#
+# 3D models with 1D crust: append "_1Dcrust" the the 3D model name
+#                          to take the 1D crustal model from the
+#                          associated reference model rather than the default 3D crustal model
+# e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
+MODEL                           = 1D_transversely_isotropic_prem
 
 # parameters describing the Earth model
 OCEANS                          = .false.
@@ -48,8 +55,11 @@
 RECORD_LENGTH_IN_MINUTES        = 50.0d0
 
 # save AVS or OpenDX movies
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
+#MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .false.
 MOVIE_VOLUME                    = .false.
+MOVIE_COARSE                    = .true.
 NTSTEP_BETWEEN_FRAMES           = 100
 HDUR_MOVIE                      = 0.d0
 
@@ -58,10 +68,8 @@
 # west/east: longitude, degrees East [-180/180] top/bottom: latitute, degrees North [-90/90]
 # start/stop: frames will be stored at MOVIE_START + i*NSTEP_BETWEEN_FRAMES, where i=(0,1,2..) and iNSTEP_BETWEEN_FRAMES <= MOVIE_STOP
 # movie_volume_type: 1=strain, 2=time integral of strain, 3=\mu*time integral of strain
-# type 4 saves the trace and deviatoric stress in the whole volume
-#MOVIE_VOLUME_COARSE saves movie only at corners of elements
+# type 4 saves the trace and deviatoric stress in the whole volume, 5=displacement, 6=velocity
 MOVIE_VOLUME_TYPE               = 2
-MOVIE_VOLUME_COARSE             = .true.
 MOVIE_TOP_KM                    = -100.0
 MOVIE_BOTTOM_KM                 = 1000.0
 MOVIE_WEST_DEG                  = -90.0
@@ -74,7 +82,7 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
@@ -85,7 +93,7 @@
 NTSTEP_BETWEEN_OUTPUT_INFO      = 100
 
 # interval in time steps for temporary writing of seismograms
-NTSTEP_BETWEEN_OUTPUT_SEISMOS   = 5000000 
+NTSTEP_BETWEEN_OUTPUT_SEISMOS   = 5000000
 NTSTEP_BETWEEN_READ_ADJSRC      = 1000
 
 # output format for the seismograms (one can use either or all of the three formats)
@@ -96,7 +104,7 @@
 # rotate seismograms to Radial-Transverse-Z or use default North-East-Z reference frame
 ROTATE_SEISMOGRAMS_RT           = .false.
 
-# decide wheter master process writes all the seismograms or if all processes do it in parallel
+# decide if master process writes all the seismograms or if all processes do it in parallel
 WRITE_SEISMOGRAMS_BY_MASTER     = .false.
 
 # save all seismograms in one large combined file instead of one file per seismogram
@@ -110,3 +118,6 @@
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .false.
 
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/benchmarks/prem_ani_noocean_Q_Cowling_Vanuatu/SEMD/DATA/Par_file
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/benchmarks/prem_ani_noocean_Q_Cowling_Vanuatu/SEMD/DATA/Par_file	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/benchmarks/prem_ani_noocean_Q_Cowling_Vanuatu/SEMD/DATA/Par_file	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,6 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
+NOISE_TOMOGRAPHY                = 0        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .false.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -15,7 +16,7 @@
 
 # number of elements at the surface along the two sides of the first chunk
 # (must be multiple of 16 and 8 * multiple of NPROC below)
-NEX_XI                          = 256 
+NEX_XI                          = 256
 NEX_ETA                         = 256
 
 # number of MPI processors along the two sides of the first chunk
@@ -23,15 +24,21 @@
 NPROC_ETA                       = 8
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362wmani, s362ani_prem, s29ea
-MODEL                           = 1D_transversely_isotropic_prem 
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
+#
+# 3D models with 1D crust: append "_1Dcrust" the the 3D model name
+#                          to take the 1D crustal model from the
+#                          associated reference model rather than the default 3D crustal model
+# e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
+MODEL                           = 1D_transversely_isotropic_prem
 
 # parameters describing the Earth model
 OCEANS                          = .false.
@@ -48,8 +55,11 @@
 RECORD_LENGTH_IN_MINUTES        = 100.0d0
 
 # save AVS or OpenDX movies
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
+#MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .false.
 MOVIE_VOLUME                    = .false.
+MOVIE_COARSE                    = .true.
 NTSTEP_BETWEEN_FRAMES           = 100
 HDUR_MOVIE                      = 0.d0
 
@@ -59,9 +69,7 @@
 # start/stop: frames will be stored at MOVIE_START + i*NSTEP_BETWEEN_FRAMES, where i=(0,1,2..) and iNSTEP_BETWEEN_FRAMES <= MOVIE_STOP
 # movie_volume_type: 1=strain, 2=time integral of strain, 3=\mu*time integral of strain
 # type 4 saves the trace and deviatoric stress in the whole volume, 5=displacement, 6=velocity
-#MOVIE_VOLUME_COARSE saves movie only at corners of elements
 MOVIE_VOLUME_TYPE               = 2
-MOVIE_VOLUME_COARSE             = .true.
 MOVIE_TOP_KM                    = -100.0
 MOVIE_BOTTOM_KM                 = 1000.0
 MOVIE_WEST_DEG                  = -90.0
@@ -74,7 +82,7 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
@@ -85,7 +93,7 @@
 NTSTEP_BETWEEN_OUTPUT_INFO      = 100
 
 # interval in time steps for temporary writing of seismograms
-NTSTEP_BETWEEN_OUTPUT_SEISMOS   = 5000000 
+NTSTEP_BETWEEN_OUTPUT_SEISMOS   = 5000000
 NTSTEP_BETWEEN_READ_ADJSRC      = 1000
 
 # output format for the seismograms (one can use either or all of the three formats)
@@ -110,3 +118,6 @@
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .false.
 
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/benchmarks/prem_iso_noocean_Q_Cowling_Vanuatu/SEMD/DATA/Par_file
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/benchmarks/prem_iso_noocean_Q_Cowling_Vanuatu/SEMD/DATA/Par_file	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/benchmarks/prem_iso_noocean_Q_Cowling_Vanuatu/SEMD/DATA/Par_file	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,6 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
+NOISE_TOMOGRAPHY                = 0        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .false.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -15,7 +16,7 @@
 
 # number of elements at the surface along the two sides of the first chunk
 # (must be multiple of 16 and 8 * multiple of NPROC below)
-NEX_XI                          = 256 
+NEX_XI                          = 256
 NEX_ETA                         = 256
 
 # number of MPI processors along the two sides of the first chunk
@@ -23,15 +24,21 @@
 NPROC_ETA                       = 8
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362wmani, s362ani_prem, s29ea
-MODEL                           = 1D_isotropic_prem 
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
+#
+# 3D models with 1D crust: append "_1Dcrust" the the 3D model name
+#                          to take the 1D crustal model from the
+#                          associated reference model rather than the default 3D crustal model
+# e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
+MODEL                           = 1D_isotropic_prem
 
 # parameters describing the Earth model
 OCEANS                          = .false.
@@ -48,8 +55,11 @@
 RECORD_LENGTH_IN_MINUTES        = 100.0d0
 
 # save AVS or OpenDX movies
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
+#MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .false.
 MOVIE_VOLUME                    = .false.
+MOVIE_COARSE                    = .true.
 NTSTEP_BETWEEN_FRAMES           = 100
 HDUR_MOVIE                      = 0.d0
 
@@ -59,9 +69,7 @@
 # start/stop: frames will be stored at MOVIE_START + i*NSTEP_BETWEEN_FRAMES, where i=(0,1,2..) and iNSTEP_BETWEEN_FRAMES <= MOVIE_STOP
 # movie_volume_type: 1=strain, 2=time integral of strain, 3=\mu*time integral of strain
 # type 4 saves the trace and deviatoric stress in the whole volume, 5=displacement, 6=velocity
-#MOVIE_VOLUME_COARSE saves movie only at corners of elements
 MOVIE_VOLUME_TYPE               = 2
-MOVIE_VOLUME_COARSE             = .true.
 MOVIE_TOP_KM                    = -100.0
 MOVIE_BOTTOM_KM                 = 1000.0
 MOVIE_WEST_DEG                  = -90.0
@@ -74,7 +82,7 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
@@ -85,7 +93,7 @@
 NTSTEP_BETWEEN_OUTPUT_INFO      = 100
 
 # interval in time steps for temporary writing of seismograms
-NTSTEP_BETWEEN_OUTPUT_SEISMOS   = 5000000 
+NTSTEP_BETWEEN_OUTPUT_SEISMOS   = 5000000
 NTSTEP_BETWEEN_READ_ADJSRC      = 1000
 
 # output format for the seismograms (one can use either or all of the three formats)
@@ -110,3 +118,6 @@
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .false.
 
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/global_PREM_kernels/amplitude/DATA/Par_file
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/global_PREM_kernels/amplitude/DATA/Par_file	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/global_PREM_kernels/amplitude/DATA/Par_file	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,6 +1,6 @@
 
 # forward or adjoint simulation
-SIMULATION_TYPE                 = 3 
+SIMULATION_TYPE                 = 3
 NOISE_TOMOGRAPHY                = 0        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .false.  # save last frame of forward simulation or not
 
@@ -24,10 +24,10 @@
 NPROC_ETA                       = 8
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
@@ -36,7 +36,7 @@
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        = 30.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .false.
 MOVIE_VOLUME                    = .false.
@@ -82,7 +82,7 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
@@ -118,3 +118,6 @@
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .false.
 
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/global_PREM_kernels/traveltime/DATA/Par_file
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/global_PREM_kernels/traveltime/DATA/Par_file	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/global_PREM_kernels/traveltime/DATA/Par_file	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,6 +1,6 @@
 
 # forward or adjoint simulation
-SIMULATION_TYPE                 = 3 
+SIMULATION_TYPE                 = 3
 NOISE_TOMOGRAPHY                = 0        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .false.  # save last frame of forward simulation or not
 
@@ -24,10 +24,10 @@
 NPROC_ETA                       = 8
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
@@ -36,7 +36,7 @@
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        = 30.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .false.
 MOVIE_VOLUME                    = .false.
@@ -82,7 +82,7 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
@@ -118,3 +118,6 @@
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .false.
 
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/global_s362ani/DATA/Par_file
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/global_s362ani/DATA/Par_file	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/global_s362ani/DATA/Par_file	2013-02-17 06:50:25 UTC (rev 21373)
@@ -24,10 +24,10 @@
 NPROC_ETA                       = 5
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
@@ -36,7 +36,7 @@
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = s362ani
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        = 15.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .false.
 MOVIE_VOLUME                    = .false.
@@ -82,7 +82,7 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
@@ -118,3 +118,6 @@
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .false.
 
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_long/Par_file_NOISE_1_attenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_long/Par_file_NOISE_1_attenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_long/Par_file_NOISE_1_attenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
-NOISE_TOMOGRAPHY                = 1        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 1        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .true.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 10
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  205.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_long/Par_file_NOISE_1_noattenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_long/Par_file_NOISE_1_noattenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_long/Par_file_NOISE_1_noattenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
-NOISE_TOMOGRAPHY                = 1        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 1        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .true.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 10
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  205.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_long/Par_file_NOISE_2_attenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_long/Par_file_NOISE_2_attenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_long/Par_file_NOISE_2_attenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
-NOISE_TOMOGRAPHY                = 2        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 2        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .true.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 10
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  205.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_long/Par_file_NOISE_2_noattenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_long/Par_file_NOISE_2_noattenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_long/Par_file_NOISE_2_noattenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
-NOISE_TOMOGRAPHY                = 2        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 2        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .true.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 10
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  205.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_long/Par_file_NOISE_3_noattenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_long/Par_file_NOISE_3_noattenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_long/Par_file_NOISE_3_noattenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 3
-NOISE_TOMOGRAPHY                = 3        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 3        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .false.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 10
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  205.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_short/Par_file_NOISE_1_attenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_short/Par_file_NOISE_1_attenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_short/Par_file_NOISE_1_attenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
-NOISE_TOMOGRAPHY                = 1        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 1        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .true.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 10
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  50.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_short/Par_file_NOISE_1_noattenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_short/Par_file_NOISE_1_noattenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_short/Par_file_NOISE_1_noattenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
-NOISE_TOMOGRAPHY                = 1        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 1        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .true.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 10
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  50.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_short/Par_file_NOISE_2_attenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_short/Par_file_NOISE_2_attenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_short/Par_file_NOISE_2_attenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
-NOISE_TOMOGRAPHY                = 2        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 2        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .true.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 10
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  50.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_short/Par_file_NOISE_2_noattenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_short/Par_file_NOISE_2_noattenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_short/Par_file_NOISE_2_noattenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
-NOISE_TOMOGRAPHY                = 2        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 2        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .true.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 10
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  50.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_short/Par_file_NOISE_3_noattenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_short/Par_file_NOISE_3_noattenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/global_short/Par_file_NOISE_3_noattenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 3
-NOISE_TOMOGRAPHY                = 3        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 3        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .false.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 10
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  50.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/regional/Par_file_NOISE_1_attenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/regional/Par_file_NOISE_1_attenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/regional/Par_file_NOISE_1_attenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
-NOISE_TOMOGRAPHY                = 1        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 1        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .true.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 20
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  50.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/regional/Par_file_NOISE_1_noattenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/regional/Par_file_NOISE_1_noattenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/regional/Par_file_NOISE_1_noattenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
-NOISE_TOMOGRAPHY                = 1        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 1        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .true.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 20
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  50.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/regional/Par_file_NOISE_2_attenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/regional/Par_file_NOISE_2_attenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/regional/Par_file_NOISE_2_attenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
-NOISE_TOMOGRAPHY                = 2        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 2        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .true.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 20
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  50.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/regional/Par_file_NOISE_2_noattenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/regional/Par_file_NOISE_2_noattenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/regional/Par_file_NOISE_2_noattenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
-NOISE_TOMOGRAPHY                = 2        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 2        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .true.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 20
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  50.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/regional/Par_file_NOISE_3_noattenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/regional/Par_file_NOISE_3_noattenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/regional/Par_file_NOISE_3_noattenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 3
-NOISE_TOMOGRAPHY                = 3        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 3        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .false.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 20
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  50.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_global/Par_file_NOISE_1_attenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_global/Par_file_NOISE_1_attenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_global/Par_file_NOISE_1_attenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
-NOISE_TOMOGRAPHY                = 1        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 1        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .true.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 10
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  1.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_global/Par_file_NOISE_1_noattenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_global/Par_file_NOISE_1_noattenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_global/Par_file_NOISE_1_noattenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
-NOISE_TOMOGRAPHY                = 1        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 1        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .true.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 10
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  1.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_global/Par_file_NOISE_2_attenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_global/Par_file_NOISE_2_attenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_global/Par_file_NOISE_2_attenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
-NOISE_TOMOGRAPHY                = 2        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 2        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .true.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 10
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  1.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_global/Par_file_NOISE_2_noattenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_global/Par_file_NOISE_2_noattenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_global/Par_file_NOISE_2_noattenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
-NOISE_TOMOGRAPHY                = 2        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 2        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .true.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 10
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  1.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_global/Par_file_NOISE_3_noattenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_global/Par_file_NOISE_3_noattenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_global/Par_file_NOISE_3_noattenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 3
-NOISE_TOMOGRAPHY                = 3        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 3        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .false.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 10
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  1.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_regional/Par_file_NOISE_1_attenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_regional/Par_file_NOISE_1_attenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_regional/Par_file_NOISE_1_attenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
-NOISE_TOMOGRAPHY                = 1        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 1        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .true.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 20
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  1.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_regional/Par_file_NOISE_1_noattenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_regional/Par_file_NOISE_1_noattenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_regional/Par_file_NOISE_1_noattenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
-NOISE_TOMOGRAPHY                = 1        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 1        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .true.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 20
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  1.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_regional/Par_file_NOISE_2_attenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_regional/Par_file_NOISE_2_attenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_regional/Par_file_NOISE_2_attenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
-NOISE_TOMOGRAPHY                = 2        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 2        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .true.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 20
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  1.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_regional/Par_file_NOISE_2_noattenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_regional/Par_file_NOISE_2_noattenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_regional/Par_file_NOISE_2_noattenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 1
-NOISE_TOMOGRAPHY                = 2        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 2        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .true.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 20
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  1.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_regional/Par_file_NOISE_3_noattenuation
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_regional/Par_file_NOISE_3_noattenuation	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/noise_examples/test_regional/Par_file_NOISE_3_noattenuation	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,7 +1,7 @@
 
 # forward or adjoint simulation
 SIMULATION_TYPE                 = 3
-NOISE_TOMOGRAPHY                = 3        # flag of noise tomography, three steps (1,2,3). If earthquake tomography, set it to 0.
+NOISE_TOMOGRAPHY                = 3        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .false.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
@@ -24,19 +24,19 @@
 NPROC_ETA                       = 20
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_isotropic_prem
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        =  1.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .true.
 MOVIE_VOLUME                    = .false.
@@ -82,13 +82,12 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
 # path to store the local database files on each node
 LOCAL_PATH                      = /scratch/yangl/DATABASES_MPI
-#/scratch/yangl/DATABASES_MPI
 
 # interval at which we output time step info and max of norm of displacement
 NTSTEP_BETWEEN_OUTPUT_INFO      = 10000
@@ -118,3 +117,7 @@
 
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .true.
+
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/DATA/Par_file
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/DATA/Par_file	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_Greece_small/DATA/Par_file	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,11 +1,11 @@
 
 # forward or adjoint simulation
-SIMULATION_TYPE                 = 1 
+SIMULATION_TYPE                 = 1
 NOISE_TOMOGRAPHY                = 0        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .false.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
-NCHUNKS                         = 1 
+NCHUNKS                         = 1
 
 # angular width of the first chunk (not used if full sphere with six chunks)
 ANGULAR_WIDTH_XI_IN_DEGREES   = 20.d0      # angular size of a chunk
@@ -16,23 +16,28 @@
 
 # number of elements at the surface along the two sides of the first chunk
 # (must be multiple of 16 and 8 * multiple of NPROC below)
-NEX_XI                          = 64 
+NEX_XI                          = 64
 NEX_ETA                         = 64
 
 # number of MPI processors along the two sides of the first chunk
-NPROC_XI                        = 2 
+NPROC_XI                        = 2
 NPROC_ETA                       = 2
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
+#
+# 3D models with 1D crust: append "_1Dcrust" the the 3D model name
+#                          to take the 1D crustal model from the
+#                          associated reference model rather than the default 3D crustal model
+# e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = 1D_transversely_isotropic_prem
 
 # parameters describing the Earth model
@@ -50,6 +55,8 @@
 RECORD_LENGTH_IN_MINUTES        = 2.5d0
 
 # save AVS or OpenDX movies
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
+#MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .false.
 MOVIE_VOLUME                    = .false.
 MOVIE_COARSE                    = .true.
@@ -62,7 +69,6 @@
 # start/stop: frames will be stored at MOVIE_START + i*NSTEP_BETWEEN_FRAMES, where i=(0,1,2..) and iNSTEP_BETWEEN_FRAMES <= MOVIE_STOP
 # movie_volume_type: 1=strain, 2=time integral of strain, 3=\mu*time integral of strain
 # type 4 saves the trace and deviatoric stress in the whole volume, 5=displacement, 6=velocity
-#MOVIE_VOLUME_COARSE saves movie only at corners of elements
 MOVIE_VOLUME_TYPE               = 2
 MOVIE_TOP_KM                    = -100.0
 MOVIE_BOTTOM_KM                 = 1000.0
@@ -76,7 +82,7 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .true.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
@@ -112,3 +118,6 @@
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .false.
 
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_MiddleEast/DATA/Par_file
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_MiddleEast/DATA/Par_file	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/regional_MiddleEast/DATA/Par_file	2013-02-17 06:50:25 UTC (rev 21373)
@@ -1,11 +1,11 @@
 
 # forward or adjoint simulation
-SIMULATION_TYPE                 = 1 
+SIMULATION_TYPE                 = 1
 NOISE_TOMOGRAPHY                = 0        # flag of noise tomography, three steps (1,2,3). If earthquake simulation, set it to 0.
 SAVE_FORWARD                    = .false.  # save last frame of forward simulation or not
 
 # number of chunks (1,2,3 or 6)
-NCHUNKS                         = 1 
+NCHUNKS                         = 1
 
 # angular width of the first chunk (not used if full sphere with six chunks)
 ANGULAR_WIDTH_XI_IN_DEGREES   = 45.d0      # angular size of a chunk
@@ -16,23 +16,28 @@
 
 # number of elements at the surface along the two sides of the first chunk
 # (must be multiple of 16 and 8 * multiple of NPROC below)
-NEX_XI                          = 128 
+NEX_XI                          = 128
 NEX_ETA                         = 128
 
 # number of MPI processors along the two sides of the first chunk
-NPROC_XI                        = 8 
+NPROC_XI                        = 8
 NPROC_ETA                       = 8
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
-# s20rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
+# s20rts, s40rts, s362ani, s362iso, s362wmani, s362ani_prem, s362ani_3DQ, s362iso_3DQ,
 # s29ea, s29ea,sea99_jp3d1994,sea99,jp3d1994,heterogen
+#
+# 3D models with 1D crust: append "_1Dcrust" the the 3D model name
+#                          to take the 1D crustal model from the
+#                          associated reference model rather than the default 3D crustal model
+# e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = s29ea
 
 # parameters describing the Earth model
@@ -50,6 +55,8 @@
 RECORD_LENGTH_IN_MINUTES        = 15.0d0
 
 # save AVS or OpenDX movies
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
+#MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .false.
 MOVIE_VOLUME                    = .false.
 MOVIE_COARSE                    = .true.
@@ -62,7 +69,6 @@
 # start/stop: frames will be stored at MOVIE_START + i*NSTEP_BETWEEN_FRAMES, where i=(0,1,2..) and iNSTEP_BETWEEN_FRAMES <= MOVIE_STOP
 # movie_volume_type: 1=strain, 2=time integral of strain, 3=\mu*time integral of strain
 # type 4 saves the trace and deviatoric stress in the whole volume, 5=displacement, 6=velocity
-#MOVIE_VOLUME_COARSE saves movie only at corners of elements
 MOVIE_VOLUME_TYPE               = 2
 MOVIE_TOP_KM                    = -100.0
 MOVIE_BOTTOM_KM                 = 1000.0
@@ -76,7 +82,7 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
@@ -112,3 +118,6 @@
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .false.
 
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/small_benchmark_run_to_test_a_new_machine/Par_file_this_example
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/small_benchmark_run_to_test_a_new_machine/Par_file_this_example	2013-02-15 23:02:49 UTC (rev 21372)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/EXAMPLES/small_benchmark_run_to_test_a_new_machine/Par_file_this_example	2013-02-17 06:50:25 UTC (rev 21373)
@@ -24,10 +24,10 @@
 NPROC_ETA                       = 2
 
 # 1D models with real structure:
-# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
+# 1D_isotropic_prem, 1D_transversely_isotropic_prem, 1D_iasp91, 1D_1066a, 1D_ak135f_no_mud, 1D_ref, 1D_ref_iso, 1D_jp3d,1D_sea99
 #
 # 1D models with only one fictitious averaged crustal layer:
-# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135_onecrust
+# 1D_isotropic_prem_onecrust, 1D_transversely_isotropic_prem_onecrust, 1D_iasp91_onecrust, 1D_1066a_onecrust, 1D_ak135f_no_mud_onecrust
 #
 # fully 3D models:
 # transversely_isotropic_prem_plus_3D_crust_2.0, 3D_anisotropic, 3D_attenuation,
@@ -36,7 +36,7 @@
 #
 # 3D models with 1D crust: append "_1Dcrust" the the 3D model name
 #                          to take the 1D crustal model from the
-#                          associated reference model rather than the default 3D crustal model 
+#                          associated reference model rather than the default 3D crustal model
 # e.g. s20rts_1Dcrust, s362ani_1Dcrust, etc.
 MODEL                           = s362ani
 
@@ -55,7 +55,7 @@
 RECORD_LENGTH_IN_MINUTES        = 55.0d0
 
 # save AVS or OpenDX movies
-#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME) 
+#MOVIE_COARSE saves movie only at corners of elements (SURFACE OR VOLUME)
 #MOVIE_COARSE does not work with create_movie_AVS_DX
 MOVIE_SURFACE                   = .false.
 MOVIE_VOLUME                    = .false.
@@ -82,7 +82,7 @@
 # save mesh files to check the mesh
 SAVE_MESH_FILES                 = .false.
 
-# restart files (number of runs can be 1, 2 or 3, choose 1 for no restart files)
+# restart files (number of runs can be 1 or higher, choose 1 for no restart files)
 NUMBER_OF_RUNS                  = 1
 NUMBER_OF_THIS_RUN              = 1
 
@@ -118,3 +118,6 @@
 # print source time function
 PRINT_SOURCE_TIME_FUNCTION      = .false.
 
+# output kernels on a regular grid instead of on the mesh points
+SAVE_REGULAR_KL                 = .false.
+



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