[cig-commits] r21414 - short/3D/PyLith/benchmarks/trunk/dynamic/scecdynrup/tpv22
brad at geodynamics.org
brad at geodynamics.org
Wed Feb 27 10:49:35 PST 2013
Author: brad
Date: 2013-02-27 10:49:34 -0800 (Wed, 27 Feb 2013)
New Revision: 21414
Added:
short/3D/PyLith/benchmarks/trunk/dynamic/scecdynrup/tpv22/tabulate_offfaultdata.py
Log:
Create script to tabulate off-fault data.
Added: short/3D/PyLith/benchmarks/trunk/dynamic/scecdynrup/tpv22/tabulate_offfaultdata.py
===================================================================
--- short/3D/PyLith/benchmarks/trunk/dynamic/scecdynrup/tpv22/tabulate_offfaultdata.py (rev 0)
+++ short/3D/PyLith/benchmarks/trunk/dynamic/scecdynrup/tpv22/tabulate_offfaultdata.py 2013-02-27 18:49:34 UTC (rev 21414)
@@ -0,0 +1,111 @@
+#!/usr/bin/env python
+#
+# ----------------------------------------------------------------------
+#
+# Brad T. Aagaard
+# U.S. Geological Survey
+#
+# ----------------------------------------------------------------------
+#
+
+sim = "tpv22"
+cell = "tet4"
+dx = 200
+
+inputRoot = "output/%s_%s_%03dm-groundsurf" % (sim,cell,dx)
+outputRoot = "scecfiles/%s_%s_%03dm/" % (sim,cell,dx)
+
+# ----------------------------------------------------------------------
+import h5py
+import numpy
+import time
+
+# ----------------------------------------------------------------------
+targets = numpy.array([[-3.0e+3, -5.0e+3, 0.0],
+ [-3.0e+3, +5.0e+3, 0.0],
+ [-3.0e+3, +15.0e+3, 0.0],
+ [+3.0e+3, -5.0e+3, 0.0],
+ [+3.0e+3, +5.0e+3, 0.0],
+ [+3.0e+3, +15.0e+3, 0.0],
+ ])
+
+
+h5 = h5py.File("%s.h5" % (inputRoot), 'r', driver="sec2")
+vertices = h5['geometry/vertices'][:]
+ntargets = targets.shape[0]
+indices = []
+tolerance = 1.0e-6
+for target in targets:
+ dist = ( (vertices[:,0]-target[0])**2 +
+ (vertices[:,1]-target[1])**2 )**0.5
+ indices.append(numpy.argmin(dist))
+
+print "Indices: ", indices
+print "Coordinates of selected points:\n",vertices[indices,:]
+
+# Get datasets
+disp = h5['vertex_fields/displacement'][:]
+vel = h5['vertex_fields/velocity'][:]
+timeStamps = h5['time'][:].ravel()
+nsteps = timeStamps.shape[0]
+dt = timeStamps[1] - timeStamps[0]
+
+h5.close()
+
+# Extract locations
+disp = disp[:,indices,:]
+vel = vel[:,indices,:]
+
+# Write data
+headerA = \
+ "# problem = %s\n" % sim.upper() + \
+ "# author = Brad Aagaard\n" + \
+ "# date = %s\n" % (time.asctime()) + \
+ "# code = PyLith\n" + \
+ "# code_version = 1.9.0a (scecdynrup branch)\n" + \
+ "# element_size = %s m\n" % dx
+headerB = \
+ "# Time series in 7 columns of E14.6:\n" + \
+ "# Column #1 = time (s)\n" + \
+ "# Column #2 = horizontal fault-parallel displacement (m)\n" + \
+ "# Column #3 = horizontal fault-parallel velocity (m/s)\n" + \
+ "# Column #4 = vertical displacement (m)\n" + \
+ "# Column #5 = vertical velocity (m/s)\n" + \
+ "# Column #6 = horizontal fault-normal displacement (m)\n" + \
+ "# Column #7 = horizontal fault-normal velocity (m/s)\n" + \
+ "#\n" + \
+ "# Data fields\n" + \
+ "t h-disp h-vel v-disp v-vel n-disp n-vel\n" + \
+ "#\n"
+
+locHeader = "# location = %3.1f km off fault, %3.1f km along strike " \
+ "and %3.1f km depth\n"
+locName = "%+04dst%+04ddp%03d"
+
+lengthScale = 1000.0
+dip = 0.0
+body = -targets[:,0] / lengthScale
+strike = (targets[:,1]) / lengthScale
+
+for iloc in xrange(ntargets):
+ pt = locName % (round(10*body[iloc]),
+ round(10*strike[iloc]),
+ round(10*dip))
+ filename = "%sbody%s.dat" % (outputRoot, pt)
+ fout = open(filename, 'w')
+ fout.write(headerA)
+ fout.write("# time_step = %14.6E\n" % dt)
+ fout.write("# num_timesteps = %8d\n" % nsteps)
+ fout.write(locHeader % (body[iloc],
+ strike[iloc],
+ dip))
+ fout.write(headerB)
+ data = numpy.transpose((timeStamps,
+ +disp[:,iloc,1],
+ +vel[:,iloc,1],
+ -disp[:,iloc,2],
+ -vel[:,iloc,2],
+ -disp[:,iloc,0],
+ -vel[:,iloc,0]))
+ numpy.savetxt(fout, data, fmt='%14.6e')
+ fout.close()
Property changes on: short/3D/PyLith/benchmarks/trunk/dynamic/scecdynrup/tpv22/tabulate_offfaultdata.py
___________________________________________________________________
Name: svn:executable
+ *
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