[cig-commits] r22412 - seismo/3D/SPECFEM3D_GLOBE/trunk/doc/USER_MANUAL

dkomati1 at geodynamics.org dkomati1 at geodynamics.org
Mon Jun 24 14:37:33 PDT 2013


Author: dkomati1
Date: 2013-06-24 14:37:33 -0700 (Mon, 24 Jun 2013)
New Revision: 22412

Modified:
   seismo/3D/SPECFEM3D_GLOBE/trunk/doc/USER_MANUAL/bibliography.bib
   seismo/3D/SPECFEM3D_GLOBE/trunk/doc/USER_MANUAL/manual_SPECFEM3D_GLOBE.pdf
   seismo/3D/SPECFEM3D_GLOBE/trunk/doc/USER_MANUAL/manual_SPECFEM3D_GLOBE.tex
Log:
added a reference about the dispersion analysis of the SEM


Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/doc/USER_MANUAL/bibliography.bib
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/doc/USER_MANUAL/bibliography.bib	2013-06-24 21:34:01 UTC (rev 22411)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/doc/USER_MANUAL/bibliography.bib	2013-06-24 21:37:33 UTC (rev 22412)
@@ -1,4 +1,4 @@
-% This file was created with JabRef 2.8.1.
+% This file was created with JabRef 2.7b.
 % Encoding: UTF-8
 
 @STRING{bssa = {Bull. Seismol. Soc. Am.}}
@@ -209,22 +209,6 @@
   doi = {10.1007/s10915-005-9044-x}
 }
 
- at INPROCEEDINGS{AkBiBiEpFeGhKiLoOhTuUr03,
-  author = {Volkan Ak{\c c}elik and Jacobo Bielak and George Biros and Ioannis
-	Epanomeritakis and Antonio Fernandez and Omar Ghattas and Eui Joong
-	Kim and Julio Lopez and David O'Hallaron and Tiankai Tu and John
-	Urbanic},
-  title = {High-resolution forward and inverse earthquake modeling on terascale
-	computers},
-  booktitle = {SC'03: Proceedings of the 2003 ACM/IEEE conference on Supercomputing},
-  year = {2003},
-  pages = {52-72},
-  address = {Phoenix, Arizona, USA},
-  month = nov,
-  note = {{G}ordon {B}ell {P}rize winner article},
-  doi = {10.1145/1048935.1050202}
-}
-
 @INCOLLECTION{Aki88,
   author = {K. Aki},
   title = {Local site effects on strong ground motion},
@@ -257,6 +241,20 @@
   address = {San Francisco, USA}
 }
 
+ at INPROCEEDINGS{AkBiBiEpFeGhKiLoOhTuUr03,
+  author = {Volkan Ak{\c c}elik and Jacobo Bielak and George Biros and Ioannis
+	Epanomeritakis and Antonio Fernandez and Omar Ghattas and Eui Joong
+	Kim and Julio Lopez and David O'Hallaron and Tiankai Tu and John
+	Urbanic},
+  title = {High-resolution forward and inverse earthquake modeling on terascale
+	computers},
+  booktitle = {SC'03: Proceedings of the 2003 ACM/IEEE conference on Supercomputing},
+  year = {2003},
+  pages = {52-72},
+  address = {Phoenix, Arizona, USA},
+  doi = {10.1145/1048935.1050202}
+}
+
 @ARTICLE{AlWo08,
   author = {David Al-Attar and John H. Woodhouse},
   title = {Calculation of seismic displacement fields in self-gravitating earth
@@ -1218,11 +1216,12 @@
 	systems},
   booktitle = {SC'11: Proceedings of the 2011 ACM/IEEE conference on Supercomputing},
   year = {2011},
+  series = {SC '11},
   pages = {32:1-32:12},
   address = {Seattle, Washington, USA},
   month = nov,
+  publisher = {ACM},
   note = {Article \#32},
-  articleno = {32},
   doi = {10.1145/2063384.2063427}
 }
 
@@ -1299,6 +1298,14 @@
   pages = {229-254}
 }
 
+ at BOOK{Ben81,
+  title = {Seismic waves and sources},
+  publisher = {Springer-Verlag},
+  year = {1981},
+  author = {Ari Ben-Menahem and Sarva Jit. Singh},
+  address = {New York}
+}
+
 @ARTICLE{BeOl05,
   author = {Rafael Benites and Kim B. Olsen},
   title = {Modeling Strong Ground Motion in the {W}ellington Metropolitan Area,
@@ -1335,14 +1342,6 @@
   doi = {10.1111/j.1365-246X.2006.03500.x}
 }
 
- at BOOK{Ben81,
-  title = {Seismic waves and sources},
-  publisher = {Springer-Verlag},
-  year = {1981},
-  author = {Ari Ben-Menahem and Sarva Jit. Singh},
-  address = {New York}
-}
-
 @INCOLLECTION{BeIfNiSk94,
   author = {P. Berg and F. If and P. Nielsen and O. Skovegaard},
   title = {Analytic reference solutions},
@@ -1503,6 +1502,16 @@
   pages = {413-423}
 }
 
+ at ARTICLE{BiSy04,
+  author = {B. Biondi and W. Symes},
+  title = {Angle-domain common-image gathers for migration velocity analysis
+	by wavefield-continuation imaging},
+  journal = geophysics,
+  year = {2004},
+  volume = {69},
+  pages = {1283-1298}
+}
+
 @ARTICLE{Biot56a,
   author = {M. A. Biot},
   title = {Theory of propagation of elastic waves in a fluid-saturated porous
@@ -2327,9 +2336,11 @@
 	{SPECFEM3D\_GLOBE} on 62 thousand processor cores},
   booktitle = {SC'08: Proceedings of the 2008 ACM/IEEE conference on Supercomputing},
   year = {2008},
-  pages = {1-11},
+  series = {SC '08},
+  pages = {60:1-60:11},
   address = {Austin, Texas, USA},
   month = nov,
+  publisher = {IEEE Press},
   note = {Article \#60, {G}ordon {B}ell {P}rize finalist article},
   doi = {10.1145/1413370.1413432}
 }
@@ -2420,6 +2431,17 @@
   pages = {1704-1713}
 }
 
+ at ARTICLE{CeLeDa11,
+  author = {Cecka, Cris and Lew, Adrian J. and Darve, Eric},
+  title = {Assembly of finite element methods on graphics processors},
+  journal = {International Journal for Numerical Methods in Engineering},
+  year = {2011},
+  volume = {85},
+  pages = {640-669},
+  number = {5},
+  doi = {10.1002/nme.2989}
+}
+
 @ARTICLE{CeMcMcOwQuWr09,
   author = {Elena Celledoni and Robert I. McLachlan and David I. McLaren and
 	Brynjulf Owren and G. Reinout W. Quispel and William M. Wright},
@@ -2773,6 +2795,18 @@
   doi = {10.1111/j.1365-246X.2004.02432.x}
 }
 
+ at ARTICLE{ChMaKo12,
+  author = {S. Chevrot and R. Martin and D. Komatitsch},
+  title = {Optimized discrete wavelet transforms in the cubed sphere with the
+	lifting scheme, implications for global finite-frequency tomography},
+  journal = gji,
+  year = {2012},
+  volume = {191},
+  pages = {1391-1402},
+  number = {3},
+  doi = {10.1111/j.1365-246X.2012.05686.x}
+}
+
 @ARTICLE{ChLi96,
   author = {W. C. Chew and Q. Liu},
   title = {{P}erfectly {M}atched {L}ayers for elastodynamics: a new absorbing
@@ -2829,10 +2863,20 @@
 	{E}arth: asymptotic and non-asymptotic approaches},
   journal = pepi,
   year = {2000},
-  volume = {119(1)},
-  pages = {37-56}
+  volume = {119},
+  pages = {37-56},
+  number = {1}
 }
 
+ at ARTICLE{Cla71,
+  author = {J. F. Claerbout},
+  title = {Toward a unified theory of reflector mapping},
+  journal = geophysics,
+  year = {1971},
+  volume = {36},
+  pages = {467-481}
+}
+
 @ARTICLE{Cla72,
   author = {M. N. Clark},
   title = {Intensity of shaking estimated from displaced stones},
@@ -3613,6 +3657,19 @@
   address = {New York}
 }
 
+ at ARTICLE{DhReCaBoGu11,
+  author = {Dhemaied, A. and Rejiba, F. and Camerlynck, C. and Bodet, L. and
+	Gu\'erin, R.},
+  title = {Seismic-Wave Propagation Modeling in Viscoelastic Media Using the
+	{A}uxiliary {D}ifferential {E}quation Method},
+  journal = bssa,
+  year = {2011},
+  volume = {101},
+  pages = {413-420},
+  number = {1},
+  doi = {10.1785/0120100064}
+}
+
 @ARTICLE{DiEz08,
   author = {Julien Diaz and Abdela\^aziz Ezziani},
   title = {Analytical solution for waves propagation in heterogeneous acoustic/porous
@@ -3658,6 +3715,18 @@
   number = {3}
 }
 
+ at ARTICLE{DmLi11,
+  author = {M. N. Dmitriev and V. V. Lisitsa},
+  title = {Application of {M-PML} Reflectionless Boundary Conditions to the
+	Numerical Simulation of Wave Propagation in Anisotropic Media. {P}art
+	{I}: {R}eflectivity},
+  journal = {Sib. Zh. Vych. Mat.},
+  year = {2011},
+  volume = {14},
+  pages = {333-344},
+  number = {4}
+}
+
 @MISC{dobbswebsite,
   author = {Dr. Dobb's},
   month = {March},
@@ -3689,6 +3758,20 @@
   doi = {10.1088/1742-2132/2/3/003}
 }
 
+ at ARTICLE{Dongarra_BLAS_1988,
+  author = {Dongarra, Jack J. and Du Croz, Jeremy and Hammarling, Sven and Hanson,
+	Richard J.},
+  title = {An extended set of {FORTRAN} basic linear algebra subprograms},
+  journal = {ACM Trans. Math. Softw.},
+  year = {1988},
+  volume = {14},
+  pages = {1-17},
+  number = {1},
+  address = {New York, NY, USA},
+  doi = {10.1145/42288.42291},
+  publisher = {ACM}
+}
+
 @ARTICLE{Doornbos83,
   author = {D. J. Doornbos},
   title = {Observable effects of the seismic absorption band in the {E}arth},
@@ -3727,6 +3810,17 @@
   pages = {2123-2133}
 }
 
+ at ARTICLE{DoYiVaTr10,
+  author = {H. Douma and D. Yingst and I. Vasconcelos and J. Tromp},
+  title = {On the connection between artifact filtering in reverse-time migration
+	and adjoint tomography},
+  journal = geophysics,
+  year = {2010},
+  volume = {75},
+  pages = {S219-S223},
+  number = {6}
+}
+
 @PHDTHESIS{Dou94,
   author = {Christophe Doursat},
   title = {Qualit\'es, d\'efauts et am\'eliorations des maillages alg\'ebriques
@@ -3948,8 +4042,8 @@
   journal = pepi,
   year = {1981},
   volume = {25},
-  number = {4},
-  pages = {297-356}
+  pages = {297-356},
+  number = {4}
 }
 
 @ARTICLE{Dziewonski77,
@@ -4008,6 +4102,18 @@
   pages = {168-172}
 }
 
+ at ARTICLE{ElYoAc09,
+  author = {Ch. P. {El Soueidy} and A. Younes and P. Ackerer},
+  title = {Solving the advection-diffusion equation on unstructured meshes with
+	discontinuous/mixed finite elements and a local time stepping procedure},
+  journal = ijnme,
+  year = {2009},
+  volume = {79},
+  pages = {1068-1093},
+  number = {9},
+  doi = {10.1002/nme.2609}
+}
+
 @ARTICLE{ElLeDa08,
   author = {Erich Elsen and Patrick LeGresley and Eric Darve},
   title = {Large calculation of the flow over a hypersonic vehicle using a {GPU}},
@@ -4020,18 +4126,6 @@
   doi = {10.1016/j.jcp.2008.08.023}
 }
 
- at ARTICLE{ElYoAc09,
-  author = {Ch. P. {El Soueidy} and A. Younes and P. Ackerer},
-  title = {Solving the advection-diffusion equation on unstructured meshes with
-	discontinuous/mixed finite elements and a local time stepping procedure},
-  journal = ijnme,
-  year = {2009},
-  volume = {79},
-  pages = {1068-1093},
-  number = {9},
-  doi = {10.1002/nme.2609}
-}
-
 @ARTICLE{EmMaNa99,
   author = {V. Emery and V. Maupin and H. C. Nataf},
   title = {Scattering of {S} waves diffracted at the core-mantle boundary: forward
@@ -4412,7 +4506,7 @@
 @ARTICLE{FaKoCaCa11,
   author = {Nathalie Favretto-Cristini and Dimitri Komatitsch and Jos\'e Carcione
 	and Fabio Cavallini},
-  title = {Elastic surface waves in crystals: {P}art {I} : Review of the physics},
+  title = {Elastic surface waves in crystals: {P}art {I}: Review of the physics},
   journal = {Ultrasonics},
   year = {2011},
   volume = {51},
@@ -4494,10 +4588,10 @@
 }
 
 @BOOK{Fic10,
-  author = {Andreas Fichtner},
   title = {Full Seismic Waveform Modelling and Inversion},
   publisher = {Springer Verlag},
   year = {2010},
+  author = {Andreas Fichtner},
   series = {Advances in Geophysical and Environmental Mechanics and Mathematics},
   address = {Heidelberg, Germany}
 }
@@ -4770,53 +4864,17 @@
   doi = {10.1046/j.1365-246X.1998.00682.x}
 }
 
- at PHDTHESIS{Goeddeke:2010:FAA,
-  author = {Dominik G{\"o}ddeke},
-  title = {Fast and Accurate Finite-Element Multigrid Solvers for {PDE} Simulations
-	on {GPU} Clusters},
-  school = {{T}echnische {U}niversit{\"a}t Dortmund, {F}akult{\"a}t f{\"u}r {M}athematik},
-  year = {2010},
-  month = may,
-  note = {\url{http://hdl.handle.net/2003/27243}}
+ at ARTICLE{GoKoGeRiRaPuRa13,
+  author = {Dominik G\"oddeke and Dimitri Komatitsch and Markus Geveler and Dirk
+	Ribbrock and Nikola Rajovic and Nikola Puzovic and Alex Ramirez},
+  title = {Energy efficiency vs. performance of the numerical solution of {PDE}s:
+	{A}n application study on a low-power {ARM}-based cluster},
+  journal = jcp,
+  year = {2013},
+  note = {in press},
+  doi = {10.1016/j.jcp.2012.11.031}
 }
 
- at INPROCEEDINGS{Goeddeke:2009:GAO,
-  author = {Dominik G{\"o}ddeke and Sven H.M. Buijssen and Hilmar Wobker and
-	Stefan Turek},
-  title = {{GPU} Acceleration of an Unmodified Parallel Finite Element {N}avier-{S}tokes
-	Solver},
-  booktitle = {High Performance Computing \& Simulation 2009},
-  year = {2009},
-  editor = {Waleed W. Smari and John P. McIntire},
-  pages = {12-21},
-  address = {Leipzig, Germany},
-  month = jun
-}
-
- at ARTICLE{Goeddeke:2009:CPA,
-  author = {Dominik G{\"o}ddeke and Hilmar Wobker and Robert Strzodka and Jamaludin
-	Mohd-Yusof and Patrick S. McCormick and Stefan Turek},
-  title = {Co-Processor Acceleration of an Unmodified Parallel Solid Mechanics
-	Code with {FEASTGPU}},
-  journal = {International Journal of Computational Science and Engineering},
-  year = {2009},
-  volume = {4},
-  pages = {254--269},
-  number = {4},
-  month = oct,
-  editor = {Hans Petter Langtangen and Michael Thun{\'e}}
-}
-
- at ARTICLE{GeBaJu88,
-  author = {L. G\'eli and P. Y. Bard and B. Julien},
-  title = {The effect of topography on earthquake ground motion: a review and
-	new results},
-  journal = bssa,
-  year = {1988},
-  volume = {78},
-  pages = {42-63}
-}
-
 @ARTICLE{GoStMoMcBuGrTu07,
   author = {Dominik G\"oddeke and Robert Strzodka and Jamaludin Mohd-Yusof and
 	Patrick McCormick and Sven H. M. Buijssen and Matthias Grajewski
@@ -4841,6 +4899,16 @@
   number = {4}
 }
 
+ at ARTICLE{GeBaJu88,
+  author = {L. G\'eli and P. Y. Bard and B. Julien},
+  title = {The effect of topography on earthquake ground motion: a review and
+	new results},
+  journal = bssa,
+  year = {1988},
+  volume = {78},
+  pages = {42-63}
+}
+
 @ARTICLE{GaBo89,
   author = {S. Gaffet and M. Bouchon},
   title = {Effects of two-dimensional topographies using the discrete wavenumber-boundary
@@ -5106,9 +5174,7 @@
   year = {2009},
   volume = {79},
   pages = {1309-1331},
-  number = {11},
-  owner = {komatits},
-  timestamp = {2011.01.23}
+  number = {11}
 }
 
 @ARTICLE{gilbert1970,
@@ -5576,17 +5642,43 @@
   pages = {221-235}
 }
 
- at ARTICLE{HeSa06,
-  author = {Pascal H{\'e}non and Yousef Saad},
-  title = {A Parallel Multistage {ILU} Factorization Based on a Hierarchical
-	Graph Decomposition},
-  journal = {SIAM Journal of Scientific Computing},
-  year = {2006},
-  volume = {28},
-  pages = {2266-2293},
-  number = {6}
+ at PHDTHESIS{Goeddeke:2010:FAA,
+  author = {Dominik G{\"o}ddeke},
+  title = {Fast and Accurate Finite-Element Multigrid Solvers for {PDE} Simulations
+	on {GPU} Clusters},
+  school = {{T}echnische {U}niversit{\"a}t Dortmund, {F}akult{\"a}t f{\"u}r {M}athematik},
+  year = {2010},
+  month = may,
+  note = {\url{http://hdl.handle.net/2003/27243}}
 }
 
+ at INPROCEEDINGS{Goeddeke:2009:GAO,
+  author = {Dominik G{\"o}ddeke and Sven H.M. Buijssen and Hilmar Wobker and
+	Stefan Turek},
+  title = {{GPU} Acceleration of an Unmodified Parallel Finite Element {N}avier-{S}tokes
+	Solver},
+  booktitle = {High Performance Computing \& Simulation 2009},
+  year = {2009},
+  editor = {Waleed W. Smari and John P. McIntire},
+  pages = {12-21},
+  address = {Leipzig, Germany},
+  month = jun
+}
+
+ at ARTICLE{Goeddeke:2009:CPA,
+  author = {Dominik G{\"o}ddeke and Hilmar Wobker and Robert Strzodka and Jamaludin
+	Mohd-Yusof and Patrick S. McCormick and Stefan Turek},
+  title = {Co-Processor Acceleration of an Unmodified Parallel Solid Mechanics
+	Code with {FEASTGPU}},
+  journal = {International Journal of Computational Science and Engineering},
+  year = {2009},
+  volume = {4},
+  pages = {254--269},
+  number = {4},
+  month = oct,
+  editor = {Hans Petter Langtangen and Michael Thun{\'e}}
+}
+
 @ARTICLE{Hor2,
   author = {L. H\o{}rmander},
   title = {Pseudo-differential Operators and Non Elliptic Boundary Problems},
@@ -6306,6 +6398,17 @@
   number = {4}
 }
 
+ at ARTICLE{HeSa06,
+  author = {Pascal H{\'e}non and Yousef Saad},
+  title = {A Parallel Multistage {ILU} Factorization Based on a Hierarchical
+	Graph Decomposition},
+  journal = {SIAM Journal of Scientific Computing},
+  year = {2006},
+  volume = {28},
+  pages = {2266-2293},
+  number = {6}
+}
+
 @ARTICLE{ianculescuthompson2006,
   author = {C. Ianculescu and L. L. Thompson},
   title = {Parallel iterative solution for the {H}elmholtz equation with exact
@@ -6960,15 +7063,6 @@
   pages = {108-124}
 }
 
- at ARTICLE{MoKe95,
-  author = {J. P. Montagner and B. L. N. Kennett},
-  title = {How to reconcile body-wave and normal-mode reference {E}arth models?},
-  journal = gji,
-  year = {1995},
-  volume = {122},
-  pages = {229-248}
-}
-
 @ARTICLE{KhBoEn12,
   author = {Khan, Samee and Bouvry, Pascal and Engel, Thomas},
   title = {Energy-efficient high-performance parallel and distributed computing},
@@ -7237,7 +7331,7 @@
 @ARTICLE{KoCaCaFa11,
   author = {Dimitri Komatitsch and Jos\'e Carcione and Fabio Cavallini and Nathalie
 	Favretto-Cristini},
-  title = {Elastic surface waves in crystals: {P}art {II} : Cross-check of two
+  title = {Elastic surface waves in crystals: {P}art {II}: Cross-check of two
 	full-wave numerical modeling methods},
   journal = {Ultrasonics},
   year = {2011},
@@ -7421,10 +7515,12 @@
 	on a large {B}eowulf},
   booktitle = {SC'01: Proceedings of the 2001 ACM/IEEE conference on Supercomputing},
   year = {2001},
-  pages = {33-41},
+  series = {Supercomputing '01},
+  pages = {42-50},
   address = {Denver, Colorado, USA},
   month = nov,
-  doi = {10.1109/SC.2001.10003}
+  publisher = {ACM},
+  doi = {10.1145/582034.582076}
 }
 
 @ARTICLE{KoTr01d,
@@ -7454,11 +7550,13 @@
 	simulation on the {E}arth~{S}imulator},
   booktitle = {SC'03: Proceedings of the 2003 ACM/IEEE conference on Supercomputing},
   year = {2003},
+  series = {SC '03},
   pages = {4-11},
   address = {Phoenix, Arizona, USA},
   month = nov,
+  publisher = {ACM},
   note = {{G}ordon {B}ell {P}rize winner article},
-  doi = {10.1109/SC.2003.10023}
+  doi = {10.1145/1048935.1050155}
 }
 
 @INCOLLECTION{KoTsTr05,
@@ -7658,27 +7756,6 @@
   number = {6}
 }
 
- at PHDTHESIS{Krueger:2006:AGF,
-  author = {Jens Kr{\"u}ger},
-  title = {A {GPU} Framework for Interactive Simulation and Rendering of Fluid
-	Effects},
-  school = {Technische Universit{\"a}t M{\"u}nchen, Germany},
-  year = {2006},
-  month = dec
-}
-
- at ARTICLE{Krueger:2003:LAO,
-  author = {Jens Kr{\"u}ger and R{\"u}diger Westermann},
-  title = {Linear algebra operators for {GPU} implementation of numerical algorithms},
-  journal = {ACM Transactions on Graphics},
-  year = {2003},
-  volume = {22},
-  pages = {908--916},
-  number = {3},
-  month = jul,
-  doi = {10.1145/882262.882363}
-}
-
 @INPROCEEDINGS{KrTuOk04a,
   author = {Sean E. Krakiwsky and Laurence E. Turner and Michal M. Okoniewski},
   title = {Graphics processor unit ({GPU}) acceleration of a finite-difference
@@ -7815,6 +7892,27 @@
   number = {2}
 }
 
+ at PHDTHESIS{Krueger:2006:AGF,
+  author = {Jens Kr{\"u}ger},
+  title = {A {GPU} Framework for Interactive Simulation and Rendering of Fluid
+	Effects},
+  school = {Technische Universit{\"a}t M{\"u}nchen, Germany},
+  year = {2006},
+  month = dec
+}
+
+ at ARTICLE{Krueger:2003:LAO,
+  author = {Jens Kr{\"u}ger and R{\"u}diger Westermann},
+  title = {Linear algebra operators for {GPU} implementation of numerical algorithms},
+  journal = {ACM Transactions on Graphics},
+  year = {2003},
+  volume = {22},
+  pages = {908--916},
+  number = {3},
+  month = jul,
+  doi = {10.1145/882262.882363}
+}
+
 @ARTICLE{KuAn69,
   author = {M. Kumazawa and O. L. Anderson},
   title = {Elastic Moduli, Pressure Derivates and Temperature Derivates of Single-Crystal
@@ -7866,6 +7964,18 @@
   number = {12}
 }
 
+ at ARTICLE{LaHu10,
+  author = {L\"{a}hivaara, T. and Huttunen, T.},
+  title = {A non-uniform basis order for the discontinuous {G}alerkin method
+	of the {3D} dissipative wave equation with perfectly matched layer},
+  journal = jcp,
+  year = {2010},
+  volume = {229},
+  pages = {5144-5160},
+  number = {13},
+  doi = {10.1016/j.jcp.2010.03.030}
+}
+
 @ARTICLE{LaMaQu97,
   author = {D. J. P. Lahaye and F. Maggio and A. Quarteroni},
   title = {Hybrid finite element-spectral element approximation of wave propagation
@@ -7877,6 +7987,17 @@
   number = {4}
 }
 
+ at INPROCEEDINGS{Lai83,
+  author = {P. Lailly},
+  title = {The seismic inverse problem as a sequence of before-stack migrations},
+  booktitle = {Proceedings of the Conference on Inverse Scattering, Theory and Application
+	Expanded Abstracts},
+  year = {1983},
+  pages = {206-220},
+  address = {Philadelphia, USA},
+  publisher = {Society of Industrial and Applied Mathematics}
+}
+
 @ARTICLE{Lak87,
   author = {R. Lakes},
   title = {Foam structures with a negative {P}oisson's ratio},
@@ -7986,6 +8107,14 @@
   pages = {1373-1376}
 }
 
+ at PHDTHESIS{LeRousseau2001,
+  author = {J. H. {Le Rousseau}},
+  title = {Microlocal analysis of wave-equation imaging and generalized-screen
+	propagators},
+  school = {Center for Wave Phenomena, Colorado School of Mines},
+  year = {2001}
+}
+
 @ARTICLE{LeLi07,
   author = {Joon Ho Lee and Qing Huo Liu},
   title = {A {3-D} Spectral-Element Time-Domain Method for Electromagnetic Simulation},
@@ -8077,14 +8206,6 @@
   pages = {9999998-9999999}
 }
 
- at PHDTHESIS{LeRousseau2001,
-  author = {J. H. {Le Rousseau}},
-  title = {Microlocal analysis of wave-equation imaging and generalized-screen
-	propagators},
-  school = {Center for Wave Phenomena, Colorado School of Mines},
-  year = {2001}
-}
-
 @BOOK{Les97,
   title = {Turbulence in fluids},
   publisher = {Kluwer Academic Publishers},
@@ -8577,6 +8698,15 @@
   number = {2}
 }
 
+ at ARTICLE{Mul85,
+  author = {G. M\"{u}ller},
+  title = {The reflectivity method: a tutorial},
+  journal = {Journal of Geophysics},
+  year = {1985},
+  volume = {58},
+  pages = {153-174}
+}
+
 @ARTICLE{MeRo00,
   author = {Charles M\'{e}gnin and Barabara Romanowicz},
   title = {The 3{D} shear velocity structure of the mantle from the inversion
@@ -8587,15 +8717,6 @@
   pages = {709-728}
 }
 
- at ARTICLE{Mul85,
-  author = {G. M\"{u}ller},
-  title = {The reflectivity method: a tutorial},
-  journal = {Journal of Geophysics},
-  year = {1985},
-  volume = {58},
-  pages = {153-174}
-}
-
 @ARTICLE{MaLi06,
   author = {Shuo Ma and Pengcheng Liu},
   title = {Modeling of the Perfectly Matched Layer Absorbing Boundaries and
@@ -9394,6 +9515,15 @@
   pages = {263-274}
 }
 
+ at ARTICLE{MoKe95,
+  author = {J. P. Montagner and B. L. N. Kennett},
+  title = {How to reconcile body-wave and normal-mode reference {E}arth models?},
+  journal = gji,
+  year = {1995},
+  volume = {122},
+  pages = {229-248}
+}
+
 @ARTICLE{montagner1998,
   author = {J.-P. Montagner},
   title = {Where can seismic anisotropy be detected in the {E}arth's mantle?
@@ -9404,6 +9534,16 @@
   pages = {223-256}
 }
 
+ at ARTICLE{MoChKoFu13,
+  author = {Vadim Monteiller and S\'ebastien Chevrot and Dimitri Komatitsch and
+	Nobuaki Fuji},
+  title = {A hybrid method to compute short period synthetic seismograms of
+	teleseismic body waves in a 3-{D} regional model},
+  journal = gji,
+  year = {2013},
+  note = {in press}
+}
+
 @ARTICLE{boutet,
   author = {L. Boutet de Monvel and P. Kr\'ee},
   title = {Pseudo-differential operators and {G}evrey classes},
@@ -9970,17 +10110,6 @@
   doi = {10.1109/JPROC.2008.917757}
 }
 
- at INPROCEEDINGS{Owens:2005:ASO,
-  author = {John D. Owens and David P. Luebke and Naga K. Govindaraju and Mark
-	J. Harris and Jens Kr{\"{u}}ger and Aaron E. Lefohn and Timothy J.
-	Purcell},
-  title = {A Survey of General-Purpose Computation on Graphics Hardware},
-  booktitle = {Eurographics 2005, State of the Art Reports},
-  year = {2005},
-  pages = {21--51},
-  month = sep
-}
-
 @ARTICLE{owens_luebke_govindaraju_2007,
   author = {John D. Owens AND David P. Luebke AND Naga K. Govindaraju AND Mark
 	J. Harris AND Jens Kr{\"u}ger AND Aaron E. Lefohn AND Timothy J.
@@ -9995,12 +10124,23 @@
   doi = {10.1111/j.1467-8659.2007.01012.x}
 }
 
+ at INPROCEEDINGS{Owens:2005:ASO,
+  author = {John D. Owens and David P. Luebke and Naga K. Govindaraju and Mark
+	J. Harris and Jens Kr{\"{u}}ger and Aaron E. Lefohn and Timothy J.
+	Purcell},
+  title = {A Survey of General-Purpose Computation on Graphics Hardware},
+  booktitle = {Eurographics 2005, State of the Art Reports},
+  year = {2005},
+  pages = {21--51},
+  month = sep
+}
+
 @BOOK{Pac97,
   title = {Parallel programming with {MPI}},
   publisher = {Morgan Kaufmann Press},
   year = {1997},
   author = {P. S. Pacheco},
-  address = {San Francisco}
+  address = {San Francisco, USA}
 }
 
 @ARTICLE{Page1995,
@@ -10642,45 +10782,6 @@
   doi = {10.1029/2004JB003347}
 }
 
- at ARTICLE{Ron96,
-  author = {E. M. R{\o}nquist},
-  title = {Convection treatment using spectral elements of different order},
-  journal = {Int. J. Num. Meth. Fluids},
-  year = {1996},
-  volume = {22},
-  pages = {241-264}
-}
-
- at PHDTHESIS{Ron88,
-  author = {E. M. R{\o}nquist},
-  title = {Optimal spectral element methods for the unsteady three-dimensional
-	incompressible {N}avier-{S}tokes equations},
-  school = {Massachussets Institute of Technology},
-  year = {1988},
-  address = {Massachussets}
-}
-
- at INPROCEEDINGS{RoPa88,
-  author = {E. M. R{\o}nquist and A. T. Patera},
-  title = {A {L}egendre Spectral-Element Method for the Incompressible {N}avier-{S}tokes
-	Equations},
-  booktitle = {Proc. of the Seventh GAMM Conference on Numerical Methods in Fluid
-	Mechanics},
-  year = {1988},
-  editor = {M. Deville},
-  pages = {318-326},
-  address = {Louvain-la-Neuve, Belgium}
-}
-
- at ARTICLE{RoPa87,
-  author = {E. M. R{\o}nquist and A. T. Patera},
-  title = {A {L}egendre {S}pectral {E}lement Method for the {S}tefan Problem},
-  journal = ijnme,
-  year = {1987},
-  volume = {24},
-  pages = {2273-2299}
-}
-
 @ARTICLE{RuRy00,
   author = {G. R\"umpker and T. Ryberg},
   title = {New "Fresnel-zone" estimates for shear-wave splitting observations
@@ -11236,6 +11337,16 @@
   number = {4}
 }
 
+ at ARTICLE{RyJi04,
+  author = {Thomas Rylander and Jian-Ming Jin},
+  title = {Perfectly matched layer for the time domain finite element method},
+  journal = jcp,
+  year = {2004},
+  volume = {200},
+  pages = {238-250},
+  doi = {10.1016/j.jcp.2004.03.016}
+}
+
 @ARTICLE{RyLe83,
   author = {G. Ryskin and L. G. Leal},
   title = {Orthogonal mapping},
@@ -11245,16 +11356,57 @@
   pages = {71-100}
 }
 
- at ARTICLE{SesmaViv01,
-  author = {F. J. S{\'a}nchez-Sesma and U. Iturrar{\'a}n-Viveros},
-  title = {Scattering and diffraction of {$SH$} waves by a finite crack: an
-	analytical solution},
-  journal = gji,
-  year = {2001},
-  volume = {145},
-  pages = {749-758}
+ at ARTICLE{Ron96,
+  author = {E. M. R{\o}nquist},
+  title = {Convection treatment using spectral elements of different order},
+  journal = {Int. J. Num. Meth. Fluids},
+  year = {1996},
+  volume = {22},
+  pages = {241-264}
 }
 
+ at PHDTHESIS{Ron88,
+  author = {E. M. R{\o}nquist},
+  title = {Optimal spectral element methods for the unsteady three-dimensional
+	incompressible {N}avier-{S}tokes equations},
+  school = {Massachussets Institute of Technology},
+  year = {1988},
+  address = {Massachussets}
+}
+
+ at INPROCEEDINGS{RoPa88,
+  author = {E. M. R{\o}nquist and A. T. Patera},
+  title = {A {L}egendre Spectral-Element Method for the Incompressible {N}avier-{S}tokes
+	Equations},
+  booktitle = {Proc. of the Seventh GAMM Conference on Numerical Methods in Fluid
+	Mechanics},
+  year = {1988},
+  editor = {M. Deville},
+  pages = {318-326},
+  address = {Louvain-la-Neuve, Belgium}
+}
+
+ at ARTICLE{RoPa87,
+  author = {E. M. R{\o}nquist and A. T. Patera},
+  title = {A {L}egendre {S}pectral {E}lement Method for the {S}tefan Problem},
+  journal = ijnme,
+  year = {1987},
+  volume = {24},
+  pages = {2273-2299}
+}
+
+ at ARTICLE{SuSh03,
+  author = {M. P. S\"uss and J. H. Shaw},
+  title = {P wave seismic velocity structure derived from sonic logs and industry
+	reflection data in the {L}os {A}ngeles basin, {C}alifornia},
+  journal = jgr,
+  year = {2003},
+  volume = {108},
+  pages = {2170},
+  number = {B3},
+  doi = {10.1029/2001JB001628}
+}
+
 @INCOLLECTION{San97,
   author = {F. J. S\'anchez-Sesma},
   title = {Strong ground motion and site effects},
@@ -11335,18 +11487,6 @@
   pages = {441-450}
 }
 
- at ARTICLE{SuSh03,
-  author = {M. P. S\"uss and J. H. Shaw},
-  title = {P wave seismic velocity structure derived from sonic logs and industry
-	reflection data in the {L}os {A}ngeles basin, {C}alifornia},
-  journal = jgr,
-  year = {2003},
-  volume = {108},
-  pages = {2170},
-  number = {B3},
-  doi = {10.1029/2001JB001628}
-}
-
 @ARTICLE{SaKiLeLe95,
   author = {Z. S. Sacks and D. M. Kingsland and R. Lee and J. F. Lee},
   title = {A {P}erfectly {M}atched anisotropic absorber for use as an absorbing
@@ -11883,6 +12023,15 @@
   publisher = {SEG}
 }
 
+ at ARTICLE{Smi74,
+  author = {Warwick D. Smith},
+  title = {A Nonreflecting Plane Boundary for Wave Propagation Problems},
+  journal = jcp,
+  year = {1974},
+  volume = {15},
+  pages = {492-503}
+}
+
 @ARTICLE{Soa09,
   author = {Soares Jr., Delfim},
   title = {Acoustic modelling by {BEM-FEM} coupling procedures taking into account
@@ -12249,6 +12398,16 @@
   address = {New York}
 }
 
+ at ARTICLE{SesmaViv01,
+  author = {F. J. S{\'a}nchez-Sesma and U. Iturrar{\'a}n-Viveros},
+  title = {Scattering and diffraction of {$SH$} waves by a finite crack: an
+	analytical solution},
+  journal = gji,
+  year = {2001},
+  volume = {145},
+  pages = {749-758}
+}
+
 @INPROCEEDINGS{TaCrEtViBeSa10,
   author = {J. Tago and Cruz-Atienza, V. M. and \'Etienne, V. and Virieux, J.
 	and Benjemaa, M. and S\'anchez-Sesma, F. J.},
@@ -12276,7 +12435,7 @@
 @ARTICLE{TaCo87,
   author = {O. Talagrand and P. Courtier},
   title = {Variational assimilation of meteorological observations with the
-	adjoint vorticity equation. I: Theory},
+	adjoint vorticity equation. {I: T}heory},
   journal = {Q. J. R. Meteorol. Soc.},
   year = {1987},
   volume = {113},
@@ -12333,6 +12492,15 @@
   address = {Amsterdam, Netherlands}
 }
 
+ at BOOK{Tarantola2005,
+  title = {Inverse problem theory and methods for model parameter
+	estimation},
+  publisher = {Society for Industrial andApplied Mathematics},
+  year = {2005},
+  author = {A. Tarantola},
+  address = {Philadelphia, Pennsylvania, USA}
+}
+
 @ARTICLE{Tar84,
   author = {A. Tarantola},
   title = {Inversion of seismic reflection data in the acoustic approximation},
@@ -13396,6 +13564,17 @@
   pages = {120-134}
 }
 
+ at ARTICLE{WaLeTe06,
+  author = {Shumin Wang and Robert Lee and Fernando L. Teixeira},
+  title = {Anisotropic-medium {PML} for vector {FETD} with modified basis functions},
+  journal = {IEEE Transactions on Antennas and Propagation},
+  year = {2006},
+  volume = {54},
+  pages = {20-27},
+  number = {1},
+  doi = {10.1109/TAP.2005.861523}
+}
+
 @ARTICLE{WaTa03,
   author = {Tsili Wang and Xiaoming Tang},
   title = {Finite-difference modeling of elastic wave propagation: A nonsplitting
@@ -13944,6 +14123,15 @@
   pages = {328-339}
 }
 
+ at ARTICLE{zhu2009,
+  author = {H. Zhu and Y. Luo and T. Nissem-Meyer and C. Morency and J. Tromp},
+  title = {Elastic imaging and time-lapse migration based on adjoint methods},
+  journal = geophysics,
+  year = {2009},
+  volume = {74},
+  pages = {WCA167-WCA177}
+}
+
 @BOOK{Zie77,
   title = {The finite element method in engineering science},
   publisher = {McGraw-Hill},
@@ -14047,35 +14235,54 @@
 	less than plus or minus one~second}
 }
 
- at ARTICLE{RyJi04,
-  author = {Thomas Rylander and Jian-Ming Jin},
-  title = {Perfectly matched layer for the time domain finite element method},
-  journal = jcp,
-  year = {2004},
-  volume = {200},
-  pages = {238-250},
-  doi = {10.1016/j.jcp.2004.03.016}
+ at PHDTHESIS{Del07,
+  author = {\'Elise Delavaud},
+  title = {Simulation num\'erique de la propagation d'ondes en milieu g\'eologique
+  complexe : application \`a l'\'evaluation de la r\'eponse sismique
+  du bassin de Caracas (Venezuela)},
+  school = {Institut de Physique du Globe},
+  year = {2007},
+  address = {Paris, France}
 }
 
- at ARTICLE{WaLeTe06,
-  author = {Shumin Wang and Robert Lee and Fernando L. Teixeira},
-  journal = {IEEE Transactions on Antennas and Propagation},
-  title = {Anisotropic-medium {PML} for vector {FETD} with modified basis functions},
-  year = {2006},
-  volume = {54},
-  number = {1},
-  pages = {20-27},
-  doi = {10.1109/TAP.2005.861523}
+ at article{BeBoBa06,
+    author = {Berland, J. and Bogey, C. and Bailly, C.},
+    journal = {Computers and Fluids},
+    pages = {1459-1463},
+    title = {Low-dissipation and low-dispersion fourth-order {Runge-Kutta} algorithm},
+    volume = {35},
+    year = {2006}
 }
 
- at article{LaHu10,
- author = {L\"{a}hivaara, T. and Huttunen, T.},
- title = {A non-uniform basis order for the discontinuous {G}alerkin method of the {3D} dissipative wave equation with perfectly matched layer},
- journal = jcp,
- volume = {229},
- number = {13},
- year = {2010},
- pages = {5144-5160},
- doi = {10.1016/j.jcp.2010.03.030}
+ at article{KrDu13,
+author={Kreiss, Gunilla and Duru, Kenneth},
+year={2013},
+journal={BIT Numerical Mathematics},
+doi={10.1007/s10543-013-0426-4},
+title={Discrete stability of perfectly matched layers for anisotropic wave equations in first and second order formulation},
+publisher={Springer Netherlands},
+pages={1-23}
 } 
 
+ at article{RaGiHaBi13,
+author = {Rabinovich, Daniel and Givoli, Dan and Hagstrom, Thomas and Bielak, Jacobo},
+title = {Stress-velocity complete radiation boundary conditions},
+journal = jca,
+volume = {21},
+number = {2},
+pages = {1350003-1--1350003-38},
+year = {2013},
+doi = {10.1142/S0218396X13500033}
+}
+
+
+ at article {MeStTh12,
+author = {Melvin, Thomas and Staniforth, Andrew and Thuburn, John},
+title = {Dispersion analysis of the spectral element method},
+journal = {Quarterly Journal of the Royal Meteorological Society},
+volume = {138},
+number = {668},
+doi = {10.1002/qj.1906},
+pages = {1934--1947},
+year = {2012}}
+

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/doc/USER_MANUAL/manual_SPECFEM3D_GLOBE.pdf
===================================================================
(Binary files differ)

Modified: seismo/3D/SPECFEM3D_GLOBE/trunk/doc/USER_MANUAL/manual_SPECFEM3D_GLOBE.tex
===================================================================
--- seismo/3D/SPECFEM3D_GLOBE/trunk/doc/USER_MANUAL/manual_SPECFEM3D_GLOBE.tex	2013-06-24 21:34:01 UTC (rev 22411)
+++ seismo/3D/SPECFEM3D_GLOBE/trunk/doc/USER_MANUAL/manual_SPECFEM3D_GLOBE.tex	2013-06-24 21:37:33 UTC (rev 22412)
@@ -157,7 +157,7 @@
 it is then close to a particular case of the discontinuous Galerkin technique \citep{ReHi73,Arn82,FaRi99,HuHuRa99,CoKaSh00,GiHeWa02,RiWh03,MoRi05,GrScSc06,AiMoMu06,BeLaPi06,DuKa06,DeSeWh08,PuAmKa09,WiStBuGh10,DeSe10,EtChViGl10}, with optimized efficiency because of its tensorized basis functions \citep{WiStBuGh10,AcKo11}.
 In particular, it can accurately handle very distorted mesh elements \citep{OlSe11}.\\
 
-It has very good accuracy and convergence properties \citep{MaPa89,SePr94,DeFiMu02,Coh02,DeSe07,SeOl08}.
+It has very good accuracy and convergence properties \citep{MaPa89,SePr94,DeFiMu02,Coh02,DeSe07,SeOl08,MeStTh12}.
 The spectral element approach admits spectral rates of convergence and allows exploiting $hp$-convergence schemes.
 It is also very well suited to parallel implementation on very large supercomputers \citep{KoTsChTr03,TsKoChTr03,KoLaMi08a,CaKoLaTiMiLeSnTr08,KoViCh10} as well as on clusters of GPU accelerating graphics cards \citep{KoMiEr09,KoErGoMi10,Kom11}. Tensor products inside each element can be optimized to reach very high efficiency \citep{DeFiMu02}, and mesh point and element numbering can be optimized to reduce processor cache misses and improve cache reuse \citep{KoLaMi08a}. The SEM can also handle triangular (in 2D) or tetrahedral (in 3D) elements \citep{WinBoyd96,TaWi00,KoMaTrTaWi01,Coh02,MeViSa06} as well as mixed meshes, although with increased cost and reduced accuracy in these elements, as in the discontinuous Galerkin method.\\
 
@@ -170,7 +170,7 @@
 For a detailed introduction to the SEM as applied to
 global and regional seismic wave propagation, please consult \citet{TrKoLi08,PeKoLuMaLeCaLeMaLiBlNiBaTr11,KoVi98,KoTr99,Ch00,KoTr02a,KoTr02b,KoRiTr02,ChCaVi03,CaChViMo03,ChVa04,ChKoViCaVaFe07}.
 A detailed theoretical analysis of the dispersion
-and stability properties of the SEM is available in \citet{Coh02}, \citet{DeSe07}, \citet{SeOl07} and \citet{SeOl08}.\\
+and stability properties of the SEM is available in \citet{Coh02}, \citet{DeSe07}, \citet{SeOl07}, \citet{SeOl08} and \citet{MeStTh12}.\\
 
 Effects due to lateral variations in compressional-wave
 speed, shear-wave speed, density, a 3D crustal model, ellipticity,



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