[cig-commits] r22414 - seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL

dkomati1 at geodynamics.org dkomati1 at geodynamics.org
Mon Jun 24 15:18:48 PDT 2013


Author: dkomati1
Date: 2013-06-24 15:18:48 -0700 (Mon, 24 Jun 2013)
New Revision: 22414

Modified:
   seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/bibliography.bib
   seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/manual_SPECFEM3D_Cartesian.pdf
   seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/manual_SPECFEM3D_Cartesian.tex
Log:
added three Discontinuous Galerkin references


Modified: seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/bibliography.bib
===================================================================
--- seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/bibliography.bib	2013-06-24 22:18:14 UTC (rev 22413)
+++ seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/bibliography.bib	2013-06-24 22:18:48 UTC (rev 22414)
@@ -1,4 +1,4 @@
-% This file was created with JabRef 2.7b.
+% This file was created with JabRef 2.9b2.
 % Encoding: UTF-8
 
 @STRING{bssa = {Bull. Seismol. Soc. Am.}}
@@ -209,6 +209,20 @@
   doi = {10.1007/s10915-005-9044-x}
 }
 
+ at INPROCEEDINGS{AkBiBiEpFeGhKiLoOhTuUr03,
+  author = {Volkan Ak{\c c}elik and Jacobo Bielak and George Biros and Ioannis
+	Epanomeritakis and Antonio Fernandez and Omar Ghattas and Eui Joong
+	Kim and Julio Lopez and David O'Hallaron and Tiankai Tu and John
+	Urbanic},
+  title = {High-resolution forward and inverse earthquake modeling on terascale
+	computers},
+  booktitle = {SC'03: Proceedings of the 2003 ACM/IEEE conference on Supercomputing},
+  year = {2003},
+  pages = {52-72},
+  address = {Phoenix, Arizona, USA},
+  doi = {10.1145/1048935.1050202}
+}
+
 @INCOLLECTION{Aki88,
   author = {K. Aki},
   title = {Local site effects on strong ground motion},
@@ -241,20 +255,6 @@
   address = {San Francisco, USA}
 }
 
- at INPROCEEDINGS{AkBiBiEpFeGhKiLoOhTuUr03,
-  author = {Volkan Ak{\c c}elik and Jacobo Bielak and George Biros and Ioannis
-	Epanomeritakis and Antonio Fernandez and Omar Ghattas and Eui Joong
-	Kim and Julio Lopez and David O'Hallaron and Tiankai Tu and John
-	Urbanic},
-  title = {High-resolution forward and inverse earthquake modeling on terascale
-	computers},
-  booktitle = {SC'03: Proceedings of the 2003 ACM/IEEE conference on Supercomputing},
-  year = {2003},
-  pages = {52-72},
-  address = {Phoenix, Arizona, USA},
-  doi = {10.1145/1048935.1050202}
-}
-
 @ARTICLE{AlWo08,
   author = {David Al-Attar and John H. Woodhouse},
   title = {Calculation of seismic displacement fields in self-gravitating earth
@@ -1298,14 +1298,6 @@
   pages = {229-254}
 }
 
- at BOOK{Ben81,
-  title = {Seismic waves and sources},
-  publisher = {Springer-Verlag},
-  year = {1981},
-  author = {Ari Ben-Menahem and Sarva Jit. Singh},
-  address = {New York}
-}
-
 @ARTICLE{BeOl05,
   author = {Rafael Benites and Kim B. Olsen},
   title = {Modeling Strong Ground Motion in the {W}ellington Metropolitan Area,
@@ -1342,6 +1334,14 @@
   doi = {10.1111/j.1365-246X.2006.03500.x}
 }
 
+ at BOOK{Ben81,
+  title = {Seismic waves and sources},
+  publisher = {Springer-Verlag},
+  year = {1981},
+  author = {Ari Ben-Menahem and Sarva Jit. Singh},
+  address = {New York}
+}
+
 @INCOLLECTION{BeIfNiSk94,
   author = {P. Berg and F. If and P. Nielsen and O. Skovegaard},
   title = {Analytic reference solutions},
@@ -1364,6 +1364,15 @@
   pages = {41-46}
 }
 
+ at ARTICLE{BeBoBa06,
+  author = {Berland, J. and Bogey, C. and Bailly, C.},
+  title = {Low-dissipation and low-dispersion fourth-order {Runge-Kutta} algorithm},
+  journal = {Computers and Fluids},
+  year = {2006},
+  volume = {35},
+  pages = {1459-1463}
+}
+
 @INPROCEEDINGS{BeHePrRo06b,
   author = {Alfredo Berm\'udez and Luis Hervella-Nieto and Andr\'es Prieto and
 	Rodolfo Rodr\'{\i}guez},
@@ -1872,6 +1881,20 @@
   address = {London, United Kingdom}
 }
 
+ at INPROCEEDINGS{BoMaHe91,
+  author = {Bourdel, Fran\c{c}oise and Mazet, Pierre-Alain and Helluy, Philippe},
+  title = {Resolution of the non-stationary or harmonic {M}axwell equations
+	by a discontinuous finite element method: {A}pplication to an {E.M.I.}
+	(electromagnetic impulse) case},
+  booktitle = {Proceedings of the 10th international conference on computing methods
+	in applied sciences and engineering},
+  year = {1991},
+  pages = {405--422},
+  address = {Commack, NY, USA},
+  publisher = {Nova Science Publishers, Inc.},
+  location = {Paris, France}
+}
+
 @ARTICLE{brandvik_pullan_euler_2d,
   author = {Tobias Brandvik and Graham Pullan},
   title = {Acceleration of a two-dimensional {E}uler flow solver using commodity
@@ -3484,18 +3507,6 @@
   pages = {520-531}
 }
 
- at ARTICLE{DeSeWh08,
-  author = {De Basabe, J. D. and Sen, M. K. and Wheeler, M. F.},
-  title = {The interior penalty discontinuous {G}alerkin method for elastic
-	wave propagation: grid dispersion},
-  journal = gji,
-  year = {2008},
-  volume = {175},
-  pages = {83-93},
-  number = {1},
-  doi = {10.1111/j.1365-246X.2008.03915.x}
-}
-
 @ARTICLE{DeSe10,
   author = {Jon{\'a}s D. {De Basabe} and Mrinal K. Sen},
   title = {Stability of the high-order finite elements for acoustic or elastic
@@ -3520,6 +3531,18 @@
   doi = {10.1190/1.2785046}
 }
 
+ at ARTICLE{DeSeWh08,
+  author = {De Basabe, J. D. and Sen, M. K. and Wheeler, M. F.},
+  title = {The interior penalty discontinuous {G}alerkin method for elastic
+	wave propagation: grid dispersion},
+  journal = gji,
+  year = {2008},
+  volume = {175},
+  pages = {83-93},
+  number = {1},
+  doi = {10.1111/j.1365-246X.2008.03915.x}
+}
+
 @BOOK{Boo78,
   title = {A practical guide to splines},
   publisher = {Springer-Verlag},
@@ -3539,6 +3562,16 @@
   pages = {253-266}
 }
 
+ at PHDTHESIS{Del07,
+  author = {\'Elise Delavaud},
+  title = {Simulation num\'erique de la propagation d'ondes en milieu g\'eologique
+	complexe : application \`a l'\'evaluation de la r\'eponse sismique
+	du bassin de Caracas (Venezuela)},
+  school = {Institut de Physique du Globe},
+  year = {2007},
+  address = {Paris, France}
+}
+
 @INPROCEEDINGS{DeCuFeVi06,
   author = {E. Delavaud and P. Cupillard and G. Festa and J.-P. Vilotte},
   title = {3{D} Spectral Element Method simulations of the seismic response
@@ -4102,6 +4135,18 @@
   pages = {168-172}
 }
 
+ at ARTICLE{ElLeDa08,
+  author = {Erich Elsen and Patrick LeGresley and Eric Darve},
+  title = {Large calculation of the flow over a hypersonic vehicle using a {GPU}},
+  journal = jcp,
+  year = {2008},
+  volume = {227},
+  pages = {10148--10161},
+  number = {24},
+  month = dec,
+  doi = {10.1016/j.jcp.2008.08.023}
+}
+
 @ARTICLE{ElYoAc09,
   author = {Ch. P. {El Soueidy} and A. Younes and P. Ackerer},
   title = {Solving the advection-diffusion equation on unstructured meshes with
@@ -4114,18 +4159,6 @@
   doi = {10.1002/nme.2609}
 }
 
- at ARTICLE{ElLeDa08,
-  author = {Erich Elsen and Patrick LeGresley and Eric Darve},
-  title = {Large calculation of the flow over a hypersonic vehicle using a {GPU}},
-  journal = jcp,
-  year = {2008},
-  volume = {227},
-  pages = {10148--10161},
-  number = {24},
-  month = dec,
-  doi = {10.1016/j.jcp.2008.08.023}
-}
-
 @ARTICLE{EmMaNa99,
   author = {V. Emery and V. Maupin and H. C. Nataf},
   title = {Scattering of {S} waves diffracted at the core-mantle boundary: forward
@@ -4864,6 +4897,53 @@
   doi = {10.1046/j.1365-246X.1998.00682.x}
 }
 
+ at PHDTHESIS{Goeddeke:2010:FAA,
+  author = {Dominik G{\"o}ddeke},
+  title = {Fast and Accurate Finite-Element Multigrid Solvers for {PDE} Simulations
+	on {GPU} Clusters},
+  school = {{T}echnische {U}niversit{\"a}t Dortmund, {F}akult{\"a}t f{\"u}r {M}athematik},
+  year = {2010},
+  month = may,
+  note = {\url{http://hdl.handle.net/2003/27243}}
+}
+
+ at INPROCEEDINGS{Goeddeke:2009:GAO,
+  author = {Dominik G{\"o}ddeke and Sven H.M. Buijssen and Hilmar Wobker and
+	Stefan Turek},
+  title = {{GPU} Acceleration of an Unmodified Parallel Finite Element {N}avier-{S}tokes
+	Solver},
+  booktitle = {High Performance Computing \& Simulation 2009},
+  year = {2009},
+  editor = {Waleed W. Smari and John P. McIntire},
+  pages = {12-21},
+  address = {Leipzig, Germany},
+  month = jun
+}
+
+ at ARTICLE{Goeddeke:2009:CPA,
+  author = {Dominik G{\"o}ddeke and Hilmar Wobker and Robert Strzodka and Jamaludin
+	Mohd-Yusof and Patrick S. McCormick and Stefan Turek},
+  title = {Co-Processor Acceleration of an Unmodified Parallel Solid Mechanics
+	Code with {FEASTGPU}},
+  journal = {International Journal of Computational Science and Engineering},
+  year = {2009},
+  volume = {4},
+  pages = {254--269},
+  number = {4},
+  month = oct,
+  editor = {Hans Petter Langtangen and Michael Thun{\'e}}
+}
+
+ at ARTICLE{GeBaJu88,
+  author = {L. G\'eli and P. Y. Bard and B. Julien},
+  title = {The effect of topography on earthquake ground motion: a review and
+	new results},
+  journal = bssa,
+  year = {1988},
+  volume = {78},
+  pages = {42-63}
+}
+
 @ARTICLE{GoKoGeRiRaPuRa13,
   author = {Dominik G\"oddeke and Dimitri Komatitsch and Markus Geveler and Dirk
 	Ribbrock and Nikola Rajovic and Nikola Puzovic and Alex Ramirez},
@@ -4899,16 +4979,6 @@
   number = {4}
 }
 
- at ARTICLE{GeBaJu88,
-  author = {L. G\'eli and P. Y. Bard and B. Julien},
-  title = {The effect of topography on earthquake ground motion: a review and
-	new results},
-  journal = bssa,
-  year = {1988},
-  volume = {78},
-  pages = {42-63}
-}
-
 @ARTICLE{GaBo89,
   author = {S. Gaffet and M. Bouchon},
   title = {Effects of two-dimensional topographies using the discrete wavenumber-boundary
@@ -5642,43 +5712,17 @@
   pages = {221-235}
 }
 
- at PHDTHESIS{Goeddeke:2010:FAA,
-  author = {Dominik G{\"o}ddeke},
-  title = {Fast and Accurate Finite-Element Multigrid Solvers for {PDE} Simulations
-	on {GPU} Clusters},
-  school = {{T}echnische {U}niversit{\"a}t Dortmund, {F}akult{\"a}t f{\"u}r {M}athematik},
-  year = {2010},
-  month = may,
-  note = {\url{http://hdl.handle.net/2003/27243}}
+ at ARTICLE{HeSa06,
+  author = {Pascal H{\'e}non and Yousef Saad},
+  title = {A Parallel Multistage {ILU} Factorization Based on a Hierarchical
+	Graph Decomposition},
+  journal = {SIAM Journal of Scientific Computing},
+  year = {2006},
+  volume = {28},
+  pages = {2266-2293},
+  number = {6}
 }
 
- at INPROCEEDINGS{Goeddeke:2009:GAO,
-  author = {Dominik G{\"o}ddeke and Sven H.M. Buijssen and Hilmar Wobker and
-	Stefan Turek},
-  title = {{GPU} Acceleration of an Unmodified Parallel Finite Element {N}avier-{S}tokes
-	Solver},
-  booktitle = {High Performance Computing \& Simulation 2009},
-  year = {2009},
-  editor = {Waleed W. Smari and John P. McIntire},
-  pages = {12-21},
-  address = {Leipzig, Germany},
-  month = jun
-}
-
- at ARTICLE{Goeddeke:2009:CPA,
-  author = {Dominik G{\"o}ddeke and Hilmar Wobker and Robert Strzodka and Jamaludin
-	Mohd-Yusof and Patrick S. McCormick and Stefan Turek},
-  title = {Co-Processor Acceleration of an Unmodified Parallel Solid Mechanics
-	Code with {FEASTGPU}},
-  journal = {International Journal of Computational Science and Engineering},
-  year = {2009},
-  volume = {4},
-  pages = {254--269},
-  number = {4},
-  month = oct,
-  editor = {Hans Petter Langtangen and Michael Thun{\'e}}
-}
-
 @ARTICLE{Hor2,
   author = {L. H\o{}rmander},
   title = {Pseudo-differential Operators and Non Elliptic Boundary Problems},
@@ -6398,17 +6442,6 @@
   number = {4}
 }
 
- at ARTICLE{HeSa06,
-  author = {Pascal H{\'e}non and Yousef Saad},
-  title = {A Parallel Multistage {ILU} Factorization Based on a Hierarchical
-	Graph Decomposition},
-  journal = {SIAM Journal of Scientific Computing},
-  year = {2006},
-  volume = {28},
-  pages = {2266-2293},
-  number = {6}
-}
-
 @ARTICLE{ianculescuthompson2006,
   author = {C. Ianculescu and L. L. Thompson},
   title = {Parallel iterative solution for the {H}elmholtz equation with exact
@@ -6750,6 +6783,18 @@
   pages = {363-387}
 }
 
+ at ARTICLE{JoPi86,
+  author = {C. Johnson and J. Pitk\"aranta},
+  title = {An analysis of the discontinuous {G}alerkin method for a scalar hyperbolic
+	equation},
+  journal = {Math. Comp.},
+  year = {1986},
+  volume = {46},
+  pages = {1-26},
+  doi = {10.1090/S0025-5718-1986-0815828-4},
+  quality = {1}
+}
+
 @TECHREPORT{Jol95,
   author = {P. Joly},
   title = {R\'esolution de l'\'equation de {B}urgers par paquets d'ondelettes},
@@ -7756,6 +7801,27 @@
   number = {6}
 }
 
+ at PHDTHESIS{Krueger:2006:AGF,
+  author = {Jens Kr{\"u}ger},
+  title = {A {GPU} Framework for Interactive Simulation and Rendering of Fluid
+	Effects},
+  school = {Technische Universit{\"a}t M{\"u}nchen, Germany},
+  year = {2006},
+  month = dec
+}
+
+ at ARTICLE{Krueger:2003:LAO,
+  author = {Jens Kr{\"u}ger and R{\"u}diger Westermann},
+  title = {Linear algebra operators for {GPU} implementation of numerical algorithms},
+  journal = {ACM Transactions on Graphics},
+  year = {2003},
+  volume = {22},
+  pages = {908--916},
+  number = {3},
+  month = jul,
+  doi = {10.1145/882262.882363}
+}
+
 @INPROCEEDINGS{KrTuOk04a,
   author = {Sean E. Krakiwsky and Laurence E. Turner and Michal M. Okoniewski},
   title = {Graphics processor unit ({GPU}) acceleration of a finite-difference
@@ -7797,6 +7863,17 @@
   number = {3}
 }
 
+ at ARTICLE{KrDu13,
+  author = {Kreiss, Gunilla and Duru, Kenneth},
+  title = {Discrete stability of perfectly matched layers for anisotropic wave
+	equations in first and second order formulation},
+  journal = {BIT Numerical Mathematics},
+  year = {2013},
+  pages = {1-23},
+  doi = {10.1007/s10543-013-0426-4},
+  publisher = {Springer Netherlands}
+}
+
 @ARTICLE{Kre06,
   author = {Steen Krenk},
   title = {Energy conservation in {N}ewmark based time integration algorithms},
@@ -7892,27 +7969,6 @@
   number = {2}
 }
 
- at PHDTHESIS{Krueger:2006:AGF,
-  author = {Jens Kr{\"u}ger},
-  title = {A {GPU} Framework for Interactive Simulation and Rendering of Fluid
-	Effects},
-  school = {Technische Universit{\"a}t M{\"u}nchen, Germany},
-  year = {2006},
-  month = dec
-}
-
- at ARTICLE{Krueger:2003:LAO,
-  author = {Jens Kr{\"u}ger and R{\"u}diger Westermann},
-  title = {Linear algebra operators for {GPU} implementation of numerical algorithms},
-  journal = {ACM Transactions on Graphics},
-  year = {2003},
-  volume = {22},
-  pages = {908--916},
-  number = {3},
-  month = jul,
-  doi = {10.1145/882262.882363}
-}
-
 @ARTICLE{KuAn69,
   author = {M. Kumazawa and O. L. Anderson},
   title = {Elastic Moduli, Pressure Derivates and Temperature Derivates of Single-Crystal
@@ -8107,14 +8163,6 @@
   pages = {1373-1376}
 }
 
- at PHDTHESIS{LeRousseau2001,
-  author = {J. H. {Le Rousseau}},
-  title = {Microlocal analysis of wave-equation imaging and generalized-screen
-	propagators},
-  school = {Center for Wave Phenomena, Colorado School of Mines},
-  year = {2001}
-}
-
 @ARTICLE{LeLi07,
   author = {Joon Ho Lee and Qing Huo Liu},
   title = {A {3-D} Spectral-Element Time-Domain Method for Electromagnetic Simulation},
@@ -8206,6 +8254,28 @@
   pages = {9999998-9999999}
 }
 
+ at PHDTHESIS{LeRousseau2001,
+  author = {J. H. {Le Rousseau}},
+  title = {Microlocal analysis of wave-equation imaging and generalized-screen
+	propagators},
+  school = {Center for Wave Phenomena, Colorado School of Mines},
+  year = {2001}
+}
+
+ at INPROCEEDINGS{LeRa74,
+  author = {P. Lesaint and P. A. Raviart},
+  title = {On a finite element method for solving the neutron transport equation
+	(Proc. Symposium, Mathematical Research Center)},
+  booktitle = {Mathematical aspects of finite elements in partial differential equations},
+  year = {1974},
+  editor = {Univ. of Wisconsin-Madison},
+  volume = {33},
+  pages = {89-123},
+  address = {New York, USA},
+  publisher = {Academic Press},
+  quality = {1}
+}
+
 @BOOK{Les97,
   title = {Turbulence in fluids},
   publisher = {Kluwer Academic Publishers},
@@ -8698,15 +8768,6 @@
   number = {2}
 }
 
- at ARTICLE{Mul85,
-  author = {G. M\"{u}ller},
-  title = {The reflectivity method: a tutorial},
-  journal = {Journal of Geophysics},
-  year = {1985},
-  volume = {58},
-  pages = {153-174}
-}
-
 @ARTICLE{MeRo00,
   author = {Charles M\'{e}gnin and Barabara Romanowicz},
   title = {The 3{D} shear velocity structure of the mantle from the inversion
@@ -8717,6 +8778,15 @@
   pages = {709-728}
 }
 
+ at ARTICLE{Mul85,
+  author = {G. M\"{u}ller},
+  title = {The reflectivity method: a tutorial},
+  journal = {Journal of Geophysics},
+  year = {1985},
+  volume = {58},
+  pages = {153-174}
+}
+
 @ARTICLE{MaLi06,
   author = {Shuo Ma and Pengcheng Liu},
   title = {Modeling of the Perfectly Matched Layer Absorbing Boundaries and
@@ -9250,6 +9320,17 @@
   pages = {1399-1414}
 }
 
+ at ARTICLE{MeStTh12,
+  author = {Melvin, Thomas and Staniforth, Andrew and Thuburn, John},
+  title = {Dispersion analysis of the spectral element method},
+  journal = {Quarterly Journal of the Royal Meteorological Society},
+  year = {2012},
+  volume = {138},
+  pages = {1934--1947},
+  number = {668},
+  doi = {10.1002/qj.1906}
+}
+
 @ARTICLE{MeViSa06,
   author = {E. D. Mercerat and J. P. Vilotte and F. J. S\'anchez-Sesma},
   title = {Triangular spectral-element simulation of two-dimensional elastic
@@ -9515,15 +9596,6 @@
   pages = {263-274}
 }
 
- at ARTICLE{MoKe95,
-  author = {J. P. Montagner and B. L. N. Kennett},
-  title = {How to reconcile body-wave and normal-mode reference {E}arth models?},
-  journal = gji,
-  year = {1995},
-  volume = {122},
-  pages = {229-248}
-}
-
 @ARTICLE{montagner1998,
   author = {J.-P. Montagner},
   title = {Where can seismic anisotropy be detected in the {E}arth's mantle?
@@ -9534,6 +9606,15 @@
   pages = {223-256}
 }
 
+ at ARTICLE{MoKe95,
+  author = {J. P. Montagner and B. L. N. Kennett},
+  title = {How to reconcile body-wave and normal-mode reference {E}arth models?},
+  journal = gji,
+  year = {1995},
+  volume = {122},
+  pages = {229-248}
+}
+
 @ARTICLE{MoChKoFu13,
   author = {Vadim Monteiller and S\'ebastien Chevrot and Dimitri Komatitsch and
 	Nobuaki Fuji},
@@ -10110,6 +10191,17 @@
   doi = {10.1109/JPROC.2008.917757}
 }
 
+ at INPROCEEDINGS{Owens:2005:ASO,
+  author = {John D. Owens and David P. Luebke and Naga K. Govindaraju and Mark
+	J. Harris and Jens Kr{\"{u}}ger and Aaron E. Lefohn and Timothy J.
+	Purcell},
+  title = {A Survey of General-Purpose Computation on Graphics Hardware},
+  booktitle = {Eurographics 2005, State of the Art Reports},
+  year = {2005},
+  pages = {21--51},
+  month = sep
+}
+
 @ARTICLE{owens_luebke_govindaraju_2007,
   author = {John D. Owens AND David P. Luebke AND Naga K. Govindaraju AND Mark
 	J. Harris AND Jens Kr{\"u}ger AND Aaron E. Lefohn AND Timothy J.
@@ -10124,17 +10216,6 @@
   doi = {10.1111/j.1467-8659.2007.01012.x}
 }
 
- at INPROCEEDINGS{Owens:2005:ASO,
-  author = {John D. Owens and David P. Luebke and Naga K. Govindaraju and Mark
-	J. Harris and Jens Kr{\"{u}}ger and Aaron E. Lefohn and Timothy J.
-	Purcell},
-  title = {A Survey of General-Purpose Computation on Graphics Hardware},
-  booktitle = {Eurographics 2005, State of the Art Reports},
-  year = {2005},
-  pages = {21--51},
-  month = sep
-}
-
 @BOOK{Pac97,
   title = {Parallel programming with {MPI}},
   publisher = {Morgan Kaufmann Press},
@@ -10782,6 +10863,45 @@
   doi = {10.1029/2004JB003347}
 }
 
+ at ARTICLE{Ron96,
+  author = {E. M. R{\o}nquist},
+  title = {Convection treatment using spectral elements of different order},
+  journal = {Int. J. Num. Meth. Fluids},
+  year = {1996},
+  volume = {22},
+  pages = {241-264}
+}
+
+ at PHDTHESIS{Ron88,
+  author = {E. M. R{\o}nquist},
+  title = {Optimal spectral element methods for the unsteady three-dimensional
+	incompressible {N}avier-{S}tokes equations},
+  school = {Massachussets Institute of Technology},
+  year = {1988},
+  address = {Massachussets}
+}
+
+ at INPROCEEDINGS{RoPa88,
+  author = {E. M. R{\o}nquist and A. T. Patera},
+  title = {A {L}egendre Spectral-Element Method for the Incompressible {N}avier-{S}tokes
+	Equations},
+  booktitle = {Proc. of the Seventh GAMM Conference on Numerical Methods in Fluid
+	Mechanics},
+  year = {1988},
+  editor = {M. Deville},
+  pages = {318-326},
+  address = {Louvain-la-Neuve, Belgium}
+}
+
+ at ARTICLE{RoPa87,
+  author = {E. M. R{\o}nquist and A. T. Patera},
+  title = {A {L}egendre {S}pectral {E}lement Method for the {S}tefan Problem},
+  journal = ijnme,
+  year = {1987},
+  volume = {24},
+  pages = {2273-2299}
+}
+
 @ARTICLE{RuRy00,
   author = {G. R\"umpker and T. Ryberg},
   title = {New "Fresnel-zone" estimates for shear-wave splitting observations
@@ -10792,6 +10912,18 @@
   pages = {2005-2008}
 }
 
+ at ARTICLE{RaGiHaBi13,
+  author = {Rabinovich, Daniel and Givoli, Dan and Hagstrom, Thomas and Bielak,
+	Jacobo},
+  title = {Stress-velocity complete radiation boundary conditions},
+  journal = jca,
+  year = {2013},
+  volume = {21},
+  pages = {1350003-1--1350003-38},
+  number = {2},
+  doi = {10.1142/S0218396X13500033}
+}
+
 @ARTICLE{RaNaLi09,
   author = {Nikunj Raghuvanshi and Rahul Narain and Ming C. Lin},
   title = {Efficient and Accurate Sound Propagation Using Adaptive Rectangular
@@ -11356,57 +11488,16 @@
   pages = {71-100}
 }
 
- at ARTICLE{Ron96,
-  author = {E. M. R{\o}nquist},
-  title = {Convection treatment using spectral elements of different order},
-  journal = {Int. J. Num. Meth. Fluids},
-  year = {1996},
-  volume = {22},
-  pages = {241-264}
+ at ARTICLE{SesmaViv01,
+  author = {F. J. S{\'a}nchez-Sesma and U. Iturrar{\'a}n-Viveros},
+  title = {Scattering and diffraction of {$SH$} waves by a finite crack: an
+	analytical solution},
+  journal = gji,
+  year = {2001},
+  volume = {145},
+  pages = {749-758}
 }
 
- at PHDTHESIS{Ron88,
-  author = {E. M. R{\o}nquist},
-  title = {Optimal spectral element methods for the unsteady three-dimensional
-	incompressible {N}avier-{S}tokes equations},
-  school = {Massachussets Institute of Technology},
-  year = {1988},
-  address = {Massachussets}
-}
-
- at INPROCEEDINGS{RoPa88,
-  author = {E. M. R{\o}nquist and A. T. Patera},
-  title = {A {L}egendre Spectral-Element Method for the Incompressible {N}avier-{S}tokes
-	Equations},
-  booktitle = {Proc. of the Seventh GAMM Conference on Numerical Methods in Fluid
-	Mechanics},
-  year = {1988},
-  editor = {M. Deville},
-  pages = {318-326},
-  address = {Louvain-la-Neuve, Belgium}
-}
-
- at ARTICLE{RoPa87,
-  author = {E. M. R{\o}nquist and A. T. Patera},
-  title = {A {L}egendre {S}pectral {E}lement Method for the {S}tefan Problem},
-  journal = ijnme,
-  year = {1987},
-  volume = {24},
-  pages = {2273-2299}
-}
-
- at ARTICLE{SuSh03,
-  author = {M. P. S\"uss and J. H. Shaw},
-  title = {P wave seismic velocity structure derived from sonic logs and industry
-	reflection data in the {L}os {A}ngeles basin, {C}alifornia},
-  journal = jgr,
-  year = {2003},
-  volume = {108},
-  pages = {2170},
-  number = {B3},
-  doi = {10.1029/2001JB001628}
-}
-
 @INCOLLECTION{San97,
   author = {F. J. S\'anchez-Sesma},
   title = {Strong ground motion and site effects},
@@ -11487,6 +11578,18 @@
   pages = {441-450}
 }
 
+ at ARTICLE{SuSh03,
+  author = {M. P. S\"uss and J. H. Shaw},
+  title = {P wave seismic velocity structure derived from sonic logs and industry
+	reflection data in the {L}os {A}ngeles basin, {C}alifornia},
+  journal = jgr,
+  year = {2003},
+  volume = {108},
+  pages = {2170},
+  number = {B3},
+  doi = {10.1029/2001JB001628}
+}
+
 @ARTICLE{SaKiLeLe95,
   author = {Z. S. Sacks and D. M. Kingsland and R. Lee and J. F. Lee},
   title = {A {P}erfectly {M}atched anisotropic absorber for use as an absorbing
@@ -12398,16 +12501,6 @@
   address = {New York}
 }
 
- at ARTICLE{SesmaViv01,
-  author = {F. J. S{\'a}nchez-Sesma and U. Iturrar{\'a}n-Viveros},
-  title = {Scattering and diffraction of {$SH$} waves by a finite crack: an
-	analytical solution},
-  journal = gji,
-  year = {2001},
-  volume = {145},
-  pages = {749-758}
-}
-
 @INPROCEEDINGS{TaCrEtViBeSa10,
   author = {J. Tago and Cruz-Atienza, V. M. and \'Etienne, V. and Virieux, J.
 	and Benjemaa, M. and S\'anchez-Sesma, F. J.},
@@ -12473,6 +12566,14 @@
   doi = {10.1111/j.1365-246X.2006.03191.x}
 }
 
+ at BOOK{Tarantola2005,
+  title = {Inverse problem theory and methods for model parameter estimation},
+  publisher = {Society for Industrial andApplied Mathematics},
+  year = {2005},
+  author = {A. Tarantola},
+  address = {Philadelphia, Pennsylvania, USA}
+}
+
 @ARTICLE{Tar88,
   author = {A. Tarantola},
   title = {Theoretical background for the inversion of seismic waveforms, including
@@ -12492,15 +12593,6 @@
   address = {Amsterdam, Netherlands}
 }
 
- at BOOK{Tarantola2005,
-  title = {Inverse problem theory and methods for model parameter
-	estimation},
-  publisher = {Society for Industrial andApplied Mathematics},
-  year = {2005},
-  author = {A. Tarantola},
-  address = {Philadelphia, Pennsylvania, USA}
-}
-
 @ARTICLE{Tar84,
   author = {A. Tarantola},
   title = {Inversion of seismic reflection data in the acoustic approximation},
@@ -14103,6 +14195,15 @@
   pages = {558-576}
 }
 
+ at ARTICLE{zhu2009,
+  author = {H. Zhu and Y. Luo and T. Nissem-Meyer and C. Morency and J. Tromp},
+  title = {Elastic imaging and time-lapse migration based on adjoint methods},
+  journal = geophysics,
+  year = {2009},
+  volume = {74},
+  pages = {WCA167-WCA177}
+}
+
 @ARTICLE{zhu&kanamori2000,
   author = {L. Zhu and H. Kanamori},
   title = {Moho depth variation in southern {C}alifornia from teleseismic receiver
@@ -14123,15 +14224,6 @@
   pages = {328-339}
 }
 
- at ARTICLE{zhu2009,
-  author = {H. Zhu and Y. Luo and T. Nissem-Meyer and C. Morency and J. Tromp},
-  title = {Elastic imaging and time-lapse migration based on adjoint methods},
-  journal = geophysics,
-  year = {2009},
-  volume = {74},
-  pages = {WCA167-WCA177}
-}
-
 @BOOK{Zie77,
   title = {The finite element method in engineering science},
   publisher = {McGraw-Hill},
@@ -14235,54 +14327,3 @@
 	less than plus or minus one~second}
 }
 
- at PHDTHESIS{Del07,
-  author = {\'Elise Delavaud},
-  title = {Simulation num\'erique de la propagation d'ondes en milieu g\'eologique
-  complexe : application \`a l'\'evaluation de la r\'eponse sismique
-  du bassin de Caracas (Venezuela)},
-  school = {Institut de Physique du Globe},
-  year = {2007},
-  address = {Paris, France}
-}
-
- at article{BeBoBa06,
-    author = {Berland, J. and Bogey, C. and Bailly, C.},
-    journal = {Computers and Fluids},
-    pages = {1459-1463},
-    title = {Low-dissipation and low-dispersion fourth-order {Runge-Kutta} algorithm},
-    volume = {35},
-    year = {2006}
-}
-
- at article{KrDu13,
-author={Kreiss, Gunilla and Duru, Kenneth},
-year={2013},
-journal={BIT Numerical Mathematics},
-doi={10.1007/s10543-013-0426-4},
-title={Discrete stability of perfectly matched layers for anisotropic wave equations in first and second order formulation},
-publisher={Springer Netherlands},
-pages={1-23}
-} 
-
- at article{RaGiHaBi13,
-author = {Rabinovich, Daniel and Givoli, Dan and Hagstrom, Thomas and Bielak, Jacobo},
-title = {Stress-velocity complete radiation boundary conditions},
-journal = jca,
-volume = {21},
-number = {2},
-pages = {1350003-1--1350003-38},
-year = {2013},
-doi = {10.1142/S0218396X13500033}
-}
-
-
- at article {MeStTh12,
-author = {Melvin, Thomas and Staniforth, Andrew and Thuburn, John},
-title = {Dispersion analysis of the spectral element method},
-journal = {Quarterly Journal of the Royal Meteorological Society},
-volume = {138},
-number = {668},
-doi = {10.1002/qj.1906},
-pages = {1934--1947},
-year = {2012}}
-

Modified: seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/manual_SPECFEM3D_Cartesian.pdf
===================================================================
(Binary files differ)

Modified: seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/manual_SPECFEM3D_Cartesian.tex
===================================================================
--- seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/manual_SPECFEM3D_Cartesian.tex	2013-06-24 22:18:14 UTC (rev 22413)
+++ seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/manual_SPECFEM3D_Cartesian.tex	2013-06-24 22:18:48 UTC (rev 22414)
@@ -158,7 +158,7 @@
 (SEM). The SEM is a continuous Galerkin technique \citep{TrKoLi08,PeKoLuMaLeCaLeMaLiBlNiBaTr11},
 which can easily be made discontinous \citep{BeMaPa94,Ch00,KoWoHu02,ChCaVi03,LaWaBe05,Kop06,WiStBuGh10,AcKo11};
 it is then close to a particular case of the discontinuous Galerkin
-technique \citep{ReHi73,Arn82,FaRi99,HuHuRa99,CoKaSh00,GiHeWa02,RiWh03,MoRi05,GrScSc06,AiMoMu06,BeLaPi06,DuKa06,DeSeWh08,PuAmKa09,WiStBuGh10,DeSe10,EtChViGl10},
+technique \citep{ReHi73,LeRa74,Arn82,JoPi86,BoMaHe91,FaRi99,HuHuRa99,CoKaSh00,GiHeWa02,RiWh03,MoRi05,GrScSc06,AiMoMu06,BeLaPi06,DuKa06,DeSeWh08,PuAmKa09,WiStBuGh10,DeSe10,EtChViGl10},
 with optimized efficiency because of its tensorized basis functions
 \citep{WiStBuGh10,AcKo11}. In particular, it can accurately handle
 very distorted mesh elements \citep{OlSe11}.\\



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