[cig-commits] r22815 - in seismo/3D/SPECFEM3D/trunk: CUBIT_GEOCUBIT/geocubitlib doc/GJI_2011_paper_about_the_code doc/USER_MANUAL examples/BENCHMARK_CLAERBOUT_ADJOINT/ACOUSTIC examples/BENCHMARK_CLAERBOUT_ADJOINT/ELASTIC examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides examples/Mount_StHelens examples/fault_examples/splay_faults examples/fault_examples/tpv102 examples/fault_examples/tpv103 examples/fault_examples/tpv15 examples/fault_examples/tpv16 examples/fault_examples/tpv5 examples/homogeneous_acoustic examples/homogeneous_halfspace_HEX27_elastic_no_absorbing examples/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides examples/homogeneous_halfspace_HEX8_elastic_no_absorbing examples/homogeneous_poroelastic examples/layered_halfspace examples/meshfem3D_examples/socal1D examples/tomographic_model examples/waterlayered_halfspace src/decompose_mesh src/generate_databases src/specfem3D utils/unused_routines/attenuation
dkomati1 at geodynamics.org
dkomati1 at geodynamics.org
Fri Sep 20 11:34:57 PDT 2013
Author: dkomati1
Date: 2013-09-20 11:34:57 -0700 (Fri, 20 Sep 2013)
New Revision: 22815
Removed:
seismo/3D/SPECFEM3D/trunk/utils/unused_routines/attenuation/makefile.csh
Modified:
seismo/3D/SPECFEM3D/trunk/CUBIT_GEOCUBIT/geocubitlib/menu.py
seismo/3D/SPECFEM3D/trunk/doc/GJI_2011_paper_about_the_code/paper_GJI_2011_about_the_code.tex
seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/manual_SPECFEM3D_Cartesian.tex
seismo/3D/SPECFEM3D/trunk/examples/BENCHMARK_CLAERBOUT_ADJOINT/ACOUSTIC/run_inhomogeneous.bash
seismo/3D/SPECFEM3D/trunk/examples/BENCHMARK_CLAERBOUT_ADJOINT/ELASTIC/run_inhomogeneous.bash
seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/block_mesh-anisotropic.py
seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/block_mesh.py
seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/block_mesh-anisotropic.py
seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/block_mesh.py
seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/block_mesh-anisotropic.py
seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/block_mesh.py
seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/block_mesh-anisotropic.py
seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/block_mesh.py
seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/block_mesh-anisotropic.py
seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/block_mesh.py
seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/block_mesh-anisotropic.py
seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/block_mesh.py
seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/mesh_mount.py
seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/mesh_mount_stl.py
seismo/3D/SPECFEM3D/trunk/examples/fault_examples/splay_faults/splay_faults.py
seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv102/TPV102.py
seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv103/TPV103.py
seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv15/tpv15.py
seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv16/TPV16.py
seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv5/tpv5.py
seismo/3D/SPECFEM3D/trunk/examples/homogeneous_acoustic/block_mesh.py
seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX27_elastic_no_absorbing/block_mesh-anisotropic.py
seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX27_elastic_no_absorbing/block_mesh.py
seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh-anisotropic.py
seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh.py
seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_no_absorbing/block_mesh-anisotropic.py
seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_no_absorbing/block_mesh.py
seismo/3D/SPECFEM3D/trunk/examples/homogeneous_poroelastic/block_mesh.py
seismo/3D/SPECFEM3D/trunk/examples/layered_halfspace/2lay_mesh_boundary_fig8-nodoubling.py
seismo/3D/SPECFEM3D/trunk/examples/layered_halfspace/2lay_mesh_boundary_fig8.py
seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/README
seismo/3D/SPECFEM3D/trunk/examples/tomographic_model/tomoblock_mesh.py
seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_fig8-nodoubling.py
seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_fig8.py
seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_vertical.py
seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_only-nodoubling.py
seismo/3D/SPECFEM3D/trunk/src/decompose_mesh/fault_scotch.f90
seismo/3D/SPECFEM3D/trunk/src/generate_databases/generate_databases.f90
seismo/3D/SPECFEM3D/trunk/src/specfem3D/fault_solver_common.f90
seismo/3D/SPECFEM3D/trunk/src/specfem3D/fault_solver_dynamic.f90
seismo/3D/SPECFEM3D/trunk/src/specfem3D/noise_tomography.f90
Log:
converted all the export2SESAME() names in CUBIT scripts to the new GEOCUBIT name, which is export2SPECFEM3D()
Modified: seismo/3D/SPECFEM3D/trunk/CUBIT_GEOCUBIT/geocubitlib/menu.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/CUBIT_GEOCUBIT/geocubitlib/menu.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/CUBIT_GEOCUBIT/geocubitlib/menu.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -72,7 +72,7 @@
collect a single free mesh cubitfile and refine the hex inside some curve (ex. basin)
GEOCUBIT.py --collect --meshfiles=[list of files] --curverefining=[list of SAT files]
- export a cubit mesh file (with blocks defined following the note) in a SPECFEM3D_SESAME mesh
+ export a cubit mesh file (with blocks defined following the note) in a SPECFEM3D_Cartesian mesh
GEOCUBIT.py --export2SPECFEM3D --meshfiles=[filename] (--listblock=block1,block2,..,blockN --listflag=[list of specfem flag, i.e. --listflag=1,2,3,-1])
"""
Modified: seismo/3D/SPECFEM3D/trunk/doc/GJI_2011_paper_about_the_code/paper_GJI_2011_about_the_code.tex
===================================================================
--- seismo/3D/SPECFEM3D/trunk/doc/GJI_2011_paper_about_the_code/paper_GJI_2011_about_the_code.tex 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/doc/GJI_2011_paper_about_the_code/paper_GJI_2011_about_the_code.tex 2013-09-20 18:34:57 UTC (rev 22815)
@@ -136,7 +136,7 @@
%% ------------------------------------------------------------------------ %%
% TITLE
%% ------------------------------------------------------------------------ %%
-\title[SPECFEM3D Version~2.0 `Sesame']{Forward and adjoint simulations of seismic wave propagation on fully unstructured hexahedral meshes}
+\title[SPECFEM3D Version~2.0]{Forward and adjoint simulations of seismic wave propagation on fully unstructured hexahedral meshes}
\date{January 2011}
@@ -159,14 +159,14 @@
Finite-frequency Fr\'echet derivatives are calculated using adjoint methods in both fluid and solid domains.
The software is benchmarked for a layercake model.
We present various examples of fully unstructured meshes, snapshots of wavefields and finite-frequency kernels
-generated by Version~2.0 `Sesame' of our widely used open source spectral-element package \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D}.
+generated by Version~2.0 of our widely used open source spectral-element package \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D}.
\end{summary}
%% ------------------------------------------------------------------------ %%
\section{Introduction}\label{sec:Introduction}
%% ------------------------------------------------------------------------ %%
-We present a new software package, \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0 `Sesame',
+We present a new software package, \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0,
capable of simulating forward and adjoint seismic wave propagation on fully unstructured hexahedral meshes of
arbitrary shaped model domains.
In view of unrelenting growth in computational power,
@@ -247,9 +247,9 @@
It was impossible to run spectral-element simulations on more complex 3D models without significant recoding, nor was it possible to run such simulations in regions of interest for on- and off-shore exploration seismology,
because acoustic wave propagation in fluids was not supported by the package.
-The purpose of this article is to present forward and adjoint simulations in various 3D models using the new software package, \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0 `Sesame', thereby illustrating its current capabilities.
+The purpose of this article is to present forward and adjoint simulations in various 3D models using the new software package, \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0, thereby illustrating its current capabilities.
The original \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} package for local simulations was extended, improved and optimized in various ways.
-The Version~2.0 `Sesame' release includes a more flexible internal mesher and accommodates more powerful external meshers,
+The Version~2.0 release includes a more flexible internal mesher and accommodates more powerful external meshers,
such as \href{http://cubit.sandia.gov}{CUBIT}
\citep{Bl94,WhMiBe95,Mi96,CaStLeKoPiTr08}.
Adding such external meshers into the workflow greatly increases flexibility for high-performance applications,
@@ -270,7 +270,7 @@
Let us briefly summarize the equations governing seismic wave propagation implemented in \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D}.
For more technical details, the reader is referred to \citet{KoTr99}.
-\href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0 `Sesame' implements wave propagation in coupled (an)elastic and acoustic materials
+\href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0 implements wave propagation in coupled (an)elastic and acoustic materials
on local scales.
We may thus safely neglect additional effects that would arise from self-gravitation and rotation
\citep{KoTr02b,KoTsTr05,ChKoViCaVaFe07}, which are important at longer periods.
@@ -863,7 +863,7 @@
We have taken advantage of recent advances in high-performance computing, fully unstructured hexahedral meshing, load balancing and
mesh partitioning to facilitate forward and adjoint simulations of seismic wave propagation in coupled fluid and solid domains.
Our new open source software package,
-\href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0 `Sesame',
+\href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0,
performs acoustic and (an)elastic simulations of seismic wave propagation in complex geological models.
Hexahedral meshes may be generated based on packages such as
\href{http://cubit.sandia.gov}{CUBIT},
@@ -918,7 +918,7 @@
We thank two anonymous reviewers for comments which improved the manuscript.
All simulations were performed on a Dell cluster built and maintained by the
Princeton Institute for Computational Science \& Engineering (USA).
-The open source spectral-element software package \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0 `Sesame' used
+The open source spectral-element software package \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0 used
for this article is available for download via the Computational Infrastructure for Geodynamics
(\href{http://geodynamics.org/}{CIG}).
3D graphics were produced with the open source visualization application \href{http://www.paraview.org/}{Paraview}.
@@ -1076,7 +1076,7 @@
\begin{center}
\includegraphics[width=0.8\textwidth]{./images/processing.jpg}
\end{center}
-\caption{Workflow for running spectral-element simulations with \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0 `Sesame'.
+\caption{Workflow for running spectral-element simulations with \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0.
}
\label{figure:processing}
\end{figure}
Modified: seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/manual_SPECFEM3D_Cartesian.tex
===================================================================
--- seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/manual_SPECFEM3D_Cartesian.tex 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/manual_SPECFEM3D_Cartesian.tex 2013-09-20 18:34:57 UTC (rev 22815)
@@ -2125,7 +2125,7 @@
must be called to set up the absorbing boundaries database
\item Function $\mathtt{fault\_input}$ must be called once for each fault
to set up the fault database
-\item Function $\mathtt{cubit2specfem3d.export2SESAME}$ must be called
+\item Function $\mathtt{cubit2specfem3d.export2SPECFEM3D}$ must be called
at the very end of the script to export the mesh in a SPECFEM3D format.
\end{enumerate}
The functions in \#1 and \#3 are for the bulk and are documented in
Modified: seismo/3D/SPECFEM3D/trunk/examples/BENCHMARK_CLAERBOUT_ADJOINT/ACOUSTIC/run_inhomogeneous.bash
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/BENCHMARK_CLAERBOUT_ADJOINT/ACOUSTIC/run_inhomogeneous.bash 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/BENCHMARK_CLAERBOUT_ADJOINT/ACOUSTIC/run_inhomogeneous.bash 2013-09-20 18:34:57 UTC (rev 22815)
@@ -30,7 +30,7 @@
DATA="$bin/../DATA"
OUTPUT_FILES="$bin/../OUTPUT_FILES"
models="$bin/../models"
-SESAME="$bin/../../../../"
+SPECFEM3D="$bin/../../../../"
MPIRUN="mpirun -np $NPROC "
@@ -53,7 +53,7 @@
mkdir -p $OUTPUT_FILES/DATABASES_MPI $OUTPUT_FILES $OUTPUT_FILES/SEM/dat $OUTPUT_FILES/SEM/syn
mkdir -p $models/initial_model $models/target_model $bin
-cd $SESAME
+cd $SPECFEM3D
cp ./src/shared/constants.h ./src/shared/constants.h_backup
cp ./src/specfem3D/save_adjoint_kernels.f90 ./src/specfem3D/save_adjoint_kernels.f90_backup
cp ./src/generate_databases/get_model.f90 ./src/generate_databases/get_model.f90_backup
@@ -159,7 +159,7 @@
if [ "$do_setup" == "" ]; then
-cd $SESAME
+cd $SPECFEM3D
mv ./src/generate_databases/get_model.f90_backup ./src/generate_databases/get_model.f90
mv ./src/specfem3D/save_adjoint_kernels.f90_backup ./src/specfem3D/save_adjoint_kernels.f90
mv ./src/shared/constants.h_backup ./src/shared/constants.h
Modified: seismo/3D/SPECFEM3D/trunk/examples/BENCHMARK_CLAERBOUT_ADJOINT/ELASTIC/run_inhomogeneous.bash
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/BENCHMARK_CLAERBOUT_ADJOINT/ELASTIC/run_inhomogeneous.bash 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/BENCHMARK_CLAERBOUT_ADJOINT/ELASTIC/run_inhomogeneous.bash 2013-09-20 18:34:57 UTC (rev 22815)
@@ -30,7 +30,7 @@
DATA="$bin/../DATA"
OUTPUT_FILES="$bin/../OUTPUT_FILES"
models="$bin/../models"
-SESAME="$bin/../../../../"
+SPECFEM3D="$bin/../../../../"
MPIRUN="mpirun -np $NPROC "
@@ -53,7 +53,7 @@
mkdir -p $OUTPUT_FILES/DATABASES_MPI $OUTPUT_FILES $OUTPUT_FILES/SEM/dat $OUTPUT_FILES/SEM/syn
mkdir -p $models/initial_model $models/target_model $bin
-cd $SESAME
+cd $SPECFEM3D
cp ./src/shared/constants.h ./src/shared/constants.h_backup
cp ./src/specfem3D/save_adjoint_kernels.f90 ./src/specfem3D/save_adjoint_kernels.f90_backup
cp ./src/generate_databases/get_model.f90 ./src/generate_databases/get_model.f90_backup
@@ -159,7 +159,7 @@
if [ "$do_setup" == "" ]; then
-cd $SESAME
+cd $SPECFEM3D
mv ./src/generate_databases/get_model.f90_backup ./src/generate_databases/get_model.f90
mv ./src/specfem3D/save_adjoint_kernels.f90_backup ./src/specfem3D/save_adjoint_kernels.f90
mv ./src/shared/constants.h_backup ./src/shared/constants.h
Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/block_mesh-anisotropic.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/block_mesh-anisotropic.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/block_mesh-anisotropic.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -54,9 +54,9 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/block_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/block_mesh.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/block_mesh.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -51,9 +51,9 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/block_mesh-anisotropic.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/block_mesh-anisotropic.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/block_mesh-anisotropic.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -54,9 +54,9 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/block_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/block_mesh.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/block_mesh.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -51,9 +51,9 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/block_mesh-anisotropic.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/block_mesh-anisotropic.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/block_mesh-anisotropic.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -54,9 +54,9 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/block_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/block_mesh.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/block_mesh.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -51,9 +51,9 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/block_mesh-anisotropic.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/block_mesh-anisotropic.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/block_mesh-anisotropic.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -54,9 +54,9 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/block_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/block_mesh.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/block_mesh.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -51,9 +51,9 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/block_mesh-anisotropic.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/block_mesh-anisotropic.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/block_mesh-anisotropic.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -54,9 +54,9 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/block_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/block_mesh.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/block_mesh.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -51,9 +51,9 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/block_mesh-anisotropic.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/block_mesh-anisotropic.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/block_mesh-anisotropic.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -54,9 +54,9 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/block_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/block_mesh.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/block_mesh.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -51,9 +51,9 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/mesh_mount.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/mesh_mount.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/mesh_mount.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -227,10 +227,10 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/mesh_mount_stl.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/mesh_mount_stl.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/mesh_mount_stl.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -187,10 +187,10 @@
# cleanup
os.system('rm -f topo_brick.stl topo_vol.stl topo_vol2.stl')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/fault_examples/splay_faults/splay_faults.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/fault_examples/splay_faults/splay_faults.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/fault_examples/splay_faults/splay_faults.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -199,8 +199,8 @@
cubit.cmd('block 2 attribute index 4 3000') # rho
cubit.cmd('block 2 attribute index 5 13') # Q flag (see constants.h: IATTENUATION_ ... )
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv102/TPV102.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv102/TPV102.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv102/TPV102.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -40,9 +40,9 @@
cubit.cmd('block 2 attribute index 4 2670')
cubit.cmd('block 2 attribute index 5 13')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
Au = [8] # A_up
Ad = [3] # A_down
Modified: seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv103/TPV103.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv103/TPV103.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv103/TPV103.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -39,9 +39,9 @@
cubit.cmd('block 2 attribute index 4 2670')
cubit.cmd('block 2 attribute index 5 13')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
Au = [8] # A_up
Ad = [3] # A_down
Modified: seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv15/tpv15.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv15/tpv15.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv15/tpv15.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -236,7 +236,7 @@
faultB = fault_input(2,Bu,Bd)
-## FOR THE BULK (Seismic wave propagation part for SESAME)
+## FOR THE BULK (Seismic wave propagation part for SPECFEM3D)
####### This is boundary_definition.py of GEOCUBIT
##..... which extracts the bounding faces and defines them into blocks
@@ -299,9 +299,9 @@
cubit.cmd('block 6 attribute index 4 2670') # rho
cubit.cmd('block 6 attribute index 5 13') # Q flag (see constants.h: IATTENUATION_ ... )
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv16/TPV16.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv16/TPV16.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv16/TPV16.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -43,6 +43,6 @@
cubit.cmd('block 2 attribute index 4 2670')
cubit.cmd('block 2 attribute index 5 13')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
Modified: seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv5/tpv5.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv5/tpv5.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv5/tpv5.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -102,7 +102,7 @@
faultA = fault_input(1,Au,Ad)
-# FOR THE BULK (Seismic wave propagation part for SESAME)
+# FOR THE BULK (Seismic wave propagation part for SPECFEM3D)
###### This is boundary_definition.py of GEOCUBIT
#..... which extracts the bounding faces and defines them into blocks
@@ -122,9 +122,9 @@
cubit.cmd('block 1 attribute index 4 2670') # rho
cubit.cmd('block 1 attribute index 5 13') # Q flag (see constants.h: IATTENUATION_ ... )
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/homogeneous_acoustic/block_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/homogeneous_acoustic/block_mesh.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/homogeneous_acoustic/block_mesh.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -41,9 +41,9 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX27_elastic_no_absorbing/block_mesh-anisotropic.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX27_elastic_no_absorbing/block_mesh-anisotropic.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX27_elastic_no_absorbing/block_mesh-anisotropic.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -54,9 +54,9 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX27_elastic_no_absorbing/block_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX27_elastic_no_absorbing/block_mesh.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX27_elastic_no_absorbing/block_mesh.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -51,7 +51,7 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
cubit2specfem3d.export2SPECFEM3D('MESH',hex27=True)
Modified: seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh-anisotropic.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh-anisotropic.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh-anisotropic.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -54,9 +54,9 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -52,9 +52,9 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_no_absorbing/block_mesh-anisotropic.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_no_absorbing/block_mesh-anisotropic.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_no_absorbing/block_mesh-anisotropic.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -54,9 +54,9 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_no_absorbing/block_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_no_absorbing/block_mesh.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_no_absorbing/block_mesh.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -51,9 +51,9 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/homogeneous_poroelastic/block_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/homogeneous_poroelastic/block_mesh.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/homogeneous_poroelastic/block_mesh.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -40,9 +40,9 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/layered_halfspace/2lay_mesh_boundary_fig8-nodoubling.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/layered_halfspace/2lay_mesh_boundary_fig8-nodoubling.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/layered_halfspace/2lay_mesh_boundary_fig8-nodoubling.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -103,10 +103,10 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/layered_halfspace/2lay_mesh_boundary_fig8.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/layered_halfspace/2lay_mesh_boundary_fig8.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/layered_halfspace/2lay_mesh_boundary_fig8.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -124,10 +124,10 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/README
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/README 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/README 2013-09-20 18:34:57 UTC (rev 22815)
@@ -9,7 +9,7 @@
Figures for comparison:
socal1D_koma2004.png -- 1D model meshed in SPECFEM3D_BASIN (Komatitsch et al. 2004)
- socal1D_sesame.png -- 1D model meshed here
+ socal1D.png -- 1D model meshed here
The resolution is similar to the the "2 s" accuracy mesh of Komatitsch et al. 2004 (DT = 0.011 s).
It is the same size region as one slice (out of 168) of model m16 of Tape et al. (2009).
@@ -54,7 +54,7 @@
this will create binary mesh files, e.g. "proc000***_external_mesh.bin"
in directory OUTPUT_FILES/DATABASES_MPI/.
- optional: If you have paraview, load the .vtk files (see socal1D_sesame.png).
+ optional: If you have paraview, load the .vtk files (see socal1D.png).
4. run simulation:
Modified: seismo/3D/SPECFEM3D/trunk/examples/tomographic_model/tomoblock_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/tomographic_model/tomoblock_mesh.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/tomographic_model/tomoblock_mesh.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -45,9 +45,9 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_fig8-nodoubling.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_fig8-nodoubling.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_fig8-nodoubling.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -106,10 +106,10 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_fig8.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_fig8.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_fig8.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -104,10 +104,10 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_vertical.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_vertical.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_vertical.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -52,9 +52,9 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_only-nodoubling.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_only-nodoubling.py 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_only-nodoubling.py 2013-09-20 18:34:57 UTC (rev 22815)
@@ -102,10 +102,10 @@
cubit.cmd('export mesh "top.e" dimension 3 overwrite')
cubit.cmd('save as "meshing.cub" overwrite')
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
# all files needed by SCOTCH are now in directory MESH
Modified: seismo/3D/SPECFEM3D/trunk/src/decompose_mesh/fault_scotch.f90
===================================================================
--- seismo/3D/SPECFEM3D/trunk/src/decompose_mesh/fault_scotch.f90 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/src/decompose_mesh/fault_scotch.f90 2013-09-20 18:34:57 UTC (rev 22815)
@@ -117,7 +117,7 @@
! ---------------------------------------------------------------------------------------------------
-! Saving nodes_coords to be used in SESAME for ibool_fault_side1 and side2
+! Saving nodes_coords to be used in the solver for ibool_fault_side1 and side2
subroutine save_nodes_coords(nodes_coords,nnodes)
integer, intent(in) :: nnodes
Modified: seismo/3D/SPECFEM3D/trunk/src/generate_databases/generate_databases.f90
===================================================================
--- seismo/3D/SPECFEM3D/trunk/src/generate_databases/generate_databases.f90 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/src/generate_databases/generate_databases.f90 2013-09-20 18:34:57 UTC (rev 22815)
@@ -159,7 +159,7 @@
! Evolution of the code:
! ---------------------
!
-! MPI v. 2.0 "Sesame" (Spectral ElementS on Any MEsh), November 2010:
+! MPI v. 2.0, November 2010:
! Dimitri Komatitsch, Nicolas Le Goff, Roland Martin and Pieyre Le Loher, University of Pau, France,
! Daniel Peter, Jeroen Tromp and the Princeton group of developers, Princeton University, USA,
! and Emanuele Casarotti, INGV Roma, Italy:
Modified: seismo/3D/SPECFEM3D/trunk/src/specfem3D/fault_solver_common.f90
===================================================================
--- seismo/3D/SPECFEM3D/trunk/src/specfem3D/fault_solver_common.f90 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/src/specfem3D/fault_solver_common.f90 2013-09-20 18:34:57 UTC (rev 22815)
@@ -514,7 +514,7 @@
write(IOUT,*) "# problem=TPV104" ! WARNING: this should be a user input
write(IOUT,*) "# author=Surendra Nadh Somala" ! WARNING: this should be a user input
write(IOUT,1000) time_values(2), time_values(3), time_values(1), time_values(5), time_values(6), time_values(7)
- write(IOUT,*) "# code=SPECFEM3D_SESAME (split nodes)"
+ write(IOUT,*) "# code=SPECFEM3D_Cartesian (split nodes)"
write(IOUT,*) "# code_version=1.1"
write(IOUT,*) "# element_size=100 m (*5 GLL nodes)" ! WARNING: this should be a user input
write(IOUT,*) "# time_step=",dataT%dt
Modified: seismo/3D/SPECFEM3D/trunk/src/specfem3D/fault_solver_dynamic.f90
===================================================================
--- seismo/3D/SPECFEM3D/trunk/src/specfem3D/fault_solver_dynamic.f90 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/src/specfem3D/fault_solver_dynamic.f90 2013-09-20 18:34:57 UTC (rev 22815)
@@ -949,7 +949,7 @@
write(IOUT,*) "# problem=TPV104"
write(IOUT,*) "# author=Surendra Nadh Somala"
write(IOUT,1000) time_values(2), time_values(3), time_values(1), time_values(5), time_values(6), time_values(7)
- write(IOUT,*) "# code=SPECFEM3D_SESAME (split nodes)"
+ write(IOUT,*) "# code=SPECFEM3D_Cartesian (split nodes)"
write(IOUT,*) "# code_version=1.1"
write(IOUT,*) "# element_size=100 m (*5 GLL nodes)"
write(IOUT,*) "# Column #1 = horizontal coordinate, distance along strike (m)"
Modified: seismo/3D/SPECFEM3D/trunk/src/specfem3D/noise_tomography.f90
===================================================================
--- seismo/3D/SPECFEM3D/trunk/src/specfem3D/noise_tomography.f90 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/src/specfem3D/noise_tomography.f90 2013-09-20 18:34:57 UTC (rev 22815)
@@ -103,7 +103,7 @@
!*****************************************************************************************************************
!******************************** change your noise characteristics below ****************************************
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! noise direction
- !!!!! here, the noise is assumed to be vertical (SESAME)
+ !!!!! here, the noise is assumed to be vertical
normal_x_noise_out = 0.0
normal_y_noise_out = 0.0
normal_z_noise_out = 1.0
@@ -188,7 +188,7 @@
!*****************************************************************************************************************
!******************************** change your noise characteristics below ****************************************
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! noise direction
- !!!!! here, the noise is assumed to be vertical (SESAME)
+ !!!!! here, the noise is assumed to be vertical
normal_x_noise_out = 0.0
normal_y_noise_out = 0.0
normal_z_noise_out = 1.0
Deleted: seismo/3D/SPECFEM3D/trunk/utils/unused_routines/attenuation/makefile.csh
===================================================================
--- seismo/3D/SPECFEM3D/trunk/utils/unused_routines/attenuation/makefile.csh 2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/utils/unused_routines/attenuation/makefile.csh 2013-09-20 18:34:57 UTC (rev 22815)
@@ -1,10 +0,0 @@
-#!/bin/csh
-
-# code to compute attenuation constants for SPECFEM3D_SESAME code
-
-rm -f xcompute
-gcc -o xcompute attenuation_sesame.c -lm
-
-echo "code has been compiled"
-echo "run it with: xcompute "
-
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