Fri Sep 20 11:34:57 PDT 2013

Author: dkomati1
Date: 2013-09-20 11:34:57 -0700 (Fri, 20 Sep 2013)
New Revision: 22815

Removed:
   seismo/3D/SPECFEM3D/trunk/utils/unused_routines/attenuation/makefile.csh
Modified:
   seismo/3D/SPECFEM3D/trunk/CUBIT_GEOCUBIT/geocubitlib/menu.py
   seismo/3D/SPECFEM3D/trunk/doc/GJI_2011_paper_about_the_code/paper_GJI_2011_about_the_code.tex
   seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/manual_SPECFEM3D_Cartesian.tex
   seismo/3D/SPECFEM3D/trunk/examples/BENCHMARK_CLAERBOUT_ADJOINT/ACOUSTIC/run_inhomogeneous.bash
   seismo/3D/SPECFEM3D/trunk/examples/BENCHMARK_CLAERBOUT_ADJOINT/ELASTIC/run_inhomogeneous.bash
   seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/block_mesh-anisotropic.py
   seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/block_mesh.py
   seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/block_mesh-anisotropic.py
   seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/block_mesh.py
   seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/block_mesh-anisotropic.py
   seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/block_mesh.py
   seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/block_mesh-anisotropic.py
   seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/block_mesh.py
   seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/block_mesh-anisotropic.py
   seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/block_mesh.py
   seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/block_mesh-anisotropic.py
   seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/block_mesh.py
   seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/mesh_mount.py
   seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/mesh_mount_stl.py
   seismo/3D/SPECFEM3D/trunk/examples/fault_examples/splay_faults/splay_faults.py
   seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv102/TPV102.py
   seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv103/TPV103.py
   seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv15/tpv15.py
   seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv16/TPV16.py
   seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv5/tpv5.py
   seismo/3D/SPECFEM3D/trunk/examples/homogeneous_acoustic/block_mesh.py
   seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX27_elastic_no_absorbing/block_mesh-anisotropic.py
   seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX27_elastic_no_absorbing/block_mesh.py
   seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh-anisotropic.py
   seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh.py
   seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_no_absorbing/block_mesh-anisotropic.py
   seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_no_absorbing/block_mesh.py
   seismo/3D/SPECFEM3D/trunk/examples/homogeneous_poroelastic/block_mesh.py
   seismo/3D/SPECFEM3D/trunk/examples/layered_halfspace/2lay_mesh_boundary_fig8-nodoubling.py
   seismo/3D/SPECFEM3D/trunk/examples/layered_halfspace/2lay_mesh_boundary_fig8.py
   seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/README
   seismo/3D/SPECFEM3D/trunk/examples/tomographic_model/tomoblock_mesh.py
   seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_fig8-nodoubling.py
   seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_fig8.py
   seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_vertical.py
   seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_only-nodoubling.py
   seismo/3D/SPECFEM3D/trunk/src/decompose_mesh/fault_scotch.f90
   seismo/3D/SPECFEM3D/trunk/src/generate_databases/generate_databases.f90
   seismo/3D/SPECFEM3D/trunk/src/specfem3D/fault_solver_common.f90
   seismo/3D/SPECFEM3D/trunk/src/specfem3D/fault_solver_dynamic.f90
   seismo/3D/SPECFEM3D/trunk/src/specfem3D/noise_tomography.f90
Log:
converted all the export2SESAME() names in CUBIT scripts to the new GEOCUBIT name, which is export2SPECFEM3D()


Modified: seismo/3D/SPECFEM3D/trunk/CUBIT_GEOCUBIT/geocubitlib/menu.py
===================================================================

--- seismo/3D/SPECFEM3D/trunk/CUBIT_GEOCUBIT/geocubitlib/menu.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/CUBIT_GEOCUBIT/geocubitlib/menu.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -72,7 +72,7 @@
          collect a single free mesh cubitfile and refine the hex inside some curve (ex. basin)
          GEOCUBIT.py --collect --meshfiles=[list of files] --curverefining=[list of SAT files]       
          
-         export a cubit mesh file (with blocks defined following the note)  in a SPECFEM3D_SESAME mesh
+         export a cubit mesh file (with blocks defined following the note)  in a SPECFEM3D_Cartesian mesh
          GEOCUBIT.py --export2SPECFEM3D --meshfiles=[filename] (--listblock=block1,block2,..,blockN --listflag=[list of specfem flag, i.e. --listflag=1,2,3,-1])
          
     """

Modified: seismo/3D/SPECFEM3D/trunk/doc/GJI_2011_paper_about_the_code/paper_GJI_2011_about_the_code.tex
===================================================================
--- seismo/3D/SPECFEM3D/trunk/doc/GJI_2011_paper_about_the_code/paper_GJI_2011_about_the_code.tex	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/doc/GJI_2011_paper_about_the_code/paper_GJI_2011_about_the_code.tex	2013-09-20 18:34:57 UTC (rev 22815)
@@ -136,7 +136,7 @@
 %% ------------------------------------------------------------------------ %%
 %  TITLE
 %% ------------------------------------------------------------------------ %%
-\title[SPECFEM3D Version~2.0 `Sesame']{Forward and adjoint simulations of seismic wave propagation on fully unstructured hexahedral meshes}
+\title[SPECFEM3D Version~2.0]{Forward and adjoint simulations of seismic wave propagation on fully unstructured hexahedral meshes}
 
 \date{January 2011}
 
@@ -159,14 +159,14 @@
 Finite-frequency Fr\'echet derivatives are calculated using adjoint methods in both fluid and solid domains.
 The software is benchmarked for a layercake model.
 We present various examples of fully unstructured meshes, snapshots of wavefields and finite-frequency kernels
-generated by Version~2.0 `Sesame' of our widely used open source spectral-element package \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D}.
+generated by Version~2.0 of our widely used open source spectral-element package \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D}.
  \end{summary}
 
 
 %% ------------------------------------------------------------------------ %%
 \section{Introduction}\label{sec:Introduction}
 %% ------------------------------------------------------------------------ %%
-We present a new software package, \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0 `Sesame',
+We present a new software package, \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0,
 capable of simulating forward and adjoint seismic wave propagation on fully unstructured hexahedral meshes of
 arbitrary shaped model domains.
 In view of unrelenting  growth in computational power,
@@ -247,9 +247,9 @@
 It was impossible to run spectral-element simulations on more complex 3D models without significant recoding, nor was it possible to run such simulations in regions of interest for on- and off-shore exploration seismology,
 because acoustic wave propagation in fluids was not supported by the package.
 
-The purpose of this article is to present forward and adjoint simulations in various 3D models using the new software package, \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0 `Sesame', thereby illustrating its current capabilities.
+The purpose of this article is to present forward and adjoint simulations in various 3D models using the new software package, \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0, thereby illustrating its current capabilities.
 The original \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} package for local simulations was extended, improved and optimized in various ways.
-The Version~2.0 `Sesame' release includes a more flexible internal mesher and accommodates more powerful external meshers,
+The Version~2.0 release includes a more flexible internal mesher and accommodates more powerful external meshers,
 such as \href{http://cubit.sandia.gov}{CUBIT}
 \citep{Bl94,WhMiBe95,Mi96,CaStLeKoPiTr08}.
 Adding such external meshers into the workflow greatly increases flexibility for high-performance applications,
@@ -270,7 +270,7 @@
 
 Let us briefly summarize the equations governing seismic wave propagation implemented in \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D}.
 For more technical details, the reader is referred to \citet{KoTr99}.
-\href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0 `Sesame' implements wave propagation in coupled (an)elastic and acoustic materials
+\href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0 implements wave propagation in coupled (an)elastic and acoustic materials
 on local scales.
 We may thus safely neglect additional effects that would arise from self-gravitation and rotation
 \citep{KoTr02b,KoTsTr05,ChKoViCaVaFe07}, which are important at longer periods.
@@ -863,7 +863,7 @@
 We have taken advantage of recent advances in high-performance computing, fully unstructured hexahedral meshing, load balancing and
 mesh partitioning to facilitate forward and adjoint simulations of seismic wave propagation in coupled fluid and solid domains.
 Our new open source software package,
-\href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0 `Sesame',
+\href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0,
 performs acoustic and (an)elastic simulations of seismic wave propagation in complex geological models.
 Hexahedral meshes may be generated based on packages such as
 \href{http://cubit.sandia.gov}{CUBIT},
@@ -918,7 +918,7 @@
 We thank two anonymous reviewers for comments which improved the manuscript.
 All simulations were performed on a Dell cluster built and maintained by the
 Princeton Institute for Computational Science \& Engineering (USA).
-The open source spectral-element software package \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0 `Sesame' used
+The open source spectral-element software package \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0 used
 for this article is available for download via the Computational Infrastructure for Geodynamics
 (\href{http://geodynamics.org/}{CIG}).
 3D graphics were produced with the open source visualization application \href{http://www.paraview.org/}{Paraview}.
@@ -1076,7 +1076,7 @@
 \begin{center}
 \includegraphics[width=0.8\textwidth]{./images/processing.jpg}
 \end{center}
-\caption{Workflow for running spectral-element simulations with \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0 `Sesame'.
+\caption{Workflow for running spectral-element simulations with \href{http://www.geodynamics.org/cig/software/specfem3d}{SPECFEM3D} Version~2.0.
 }
 \label{figure:processing}
 \end{figure}

Modified: seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/manual_SPECFEM3D_Cartesian.tex
===================================================================
--- seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/manual_SPECFEM3D_Cartesian.tex	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/doc/USER_MANUAL/manual_SPECFEM3D_Cartesian.tex	2013-09-20 18:34:57 UTC (rev 22815)
@@ -2125,7 +2125,7 @@
 must be called to set up the absorbing boundaries database
 \item Function $\mathtt{fault\_input}$ must be called once for each fault
 to set up the fault database
-\item Function $\mathtt{cubit2specfem3d.export2SESAME}$ must be called
+\item Function $\mathtt{cubit2specfem3d.export2SPECFEM3D}$ must be called
 at the very end of the script to export the mesh in a SPECFEM3D format.
 \end{enumerate}
 The functions in \#1 and \#3 are for the bulk and are documented in

Modified: seismo/3D/SPECFEM3D/trunk/examples/BENCHMARK_CLAERBOUT_ADJOINT/ACOUSTIC/run_inhomogeneous.bash
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/BENCHMARK_CLAERBOUT_ADJOINT/ACOUSTIC/run_inhomogeneous.bash	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/BENCHMARK_CLAERBOUT_ADJOINT/ACOUSTIC/run_inhomogeneous.bash	2013-09-20 18:34:57 UTC (rev 22815)
@@ -30,7 +30,7 @@
 DATA="$bin/../DATA"
 OUTPUT_FILES="$bin/../OUTPUT_FILES"
 models="$bin/../models"
-SESAME="$bin/../../../../"
+SPECFEM3D="$bin/../../../../"
 
 
 MPIRUN="mpirun -np $NPROC "
@@ -53,7 +53,7 @@
 mkdir -p $OUTPUT_FILES/DATABASES_MPI $OUTPUT_FILES $OUTPUT_FILES/SEM/dat $OUTPUT_FILES/SEM/syn
 mkdir -p $models/initial_model $models/target_model $bin
 
-cd $SESAME
+cd $SPECFEM3D
 cp ./src/shared/constants.h ./src/shared/constants.h_backup
 cp ./src/specfem3D/save_adjoint_kernels.f90 ./src/specfem3D/save_adjoint_kernels.f90_backup
 cp ./src/generate_databases/get_model.f90 ./src/generate_databases/get_model.f90_backup
@@ -159,7 +159,7 @@
 
 if [ "$do_setup" == "" ]; then
 
-cd $SESAME
+cd $SPECFEM3D
 mv ./src/generate_databases/get_model.f90_backup ./src/generate_databases/get_model.f90
 mv ./src/specfem3D/save_adjoint_kernels.f90_backup ./src/specfem3D/save_adjoint_kernels.f90
 mv ./src/shared/constants.h_backup ./src/shared/constants.h

Modified: seismo/3D/SPECFEM3D/trunk/examples/BENCHMARK_CLAERBOUT_ADJOINT/ELASTIC/run_inhomogeneous.bash
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/BENCHMARK_CLAERBOUT_ADJOINT/ELASTIC/run_inhomogeneous.bash	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/BENCHMARK_CLAERBOUT_ADJOINT/ELASTIC/run_inhomogeneous.bash	2013-09-20 18:34:57 UTC (rev 22815)
@@ -30,7 +30,7 @@
 DATA="$bin/../DATA"
 OUTPUT_FILES="$bin/../OUTPUT_FILES"
 models="$bin/../models"
-SESAME="$bin/../../../../"
+SPECFEM3D="$bin/../../../../"
 
 
 MPIRUN="mpirun -np $NPROC "
@@ -53,7 +53,7 @@
 mkdir -p $OUTPUT_FILES/DATABASES_MPI $OUTPUT_FILES $OUTPUT_FILES/SEM/dat $OUTPUT_FILES/SEM/syn
 mkdir -p $models/initial_model $models/target_model $bin
 
-cd $SESAME
+cd $SPECFEM3D
 cp ./src/shared/constants.h ./src/shared/constants.h_backup
 cp ./src/specfem3D/save_adjoint_kernels.f90 ./src/specfem3D/save_adjoint_kernels.f90_backup
 cp ./src/generate_databases/get_model.f90 ./src/generate_databases/get_model.f90_backup
@@ -159,7 +159,7 @@
 
 if [ "$do_setup" == "" ]; then
 
-cd $SESAME
+cd $SPECFEM3D
 mv ./src/generate_databases/get_model.f90_backup ./src/generate_databases/get_model.f90
 mv ./src/specfem3D/save_adjoint_kernels.f90_backup ./src/specfem3D/save_adjoint_kernels.f90
 mv ./src/shared/constants.h_backup ./src/shared/constants.h

Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/block_mesh-anisotropic.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/block_mesh-anisotropic.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/block_mesh-anisotropic.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -54,9 +54,9 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH

Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/block_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/block_mesh.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/block_mesh.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -51,9 +51,9 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH

Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/block_mesh-anisotropic.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/block_mesh-anisotropic.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/block_mesh-anisotropic.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -54,9 +54,9 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH

Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/block_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/block_mesh.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/block_mesh.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -51,9 +51,9 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH

Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/block_mesh-anisotropic.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/block_mesh-anisotropic.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/block_mesh-anisotropic.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -54,9 +54,9 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH

Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/block_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/block_mesh.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/block_mesh.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -51,9 +51,9 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH

Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/block_mesh-anisotropic.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/block_mesh-anisotropic.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/block_mesh-anisotropic.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -54,9 +54,9 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH

Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/block_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/block_mesh.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/block_mesh.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -51,9 +51,9 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH

Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/block_mesh-anisotropic.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/block_mesh-anisotropic.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/block_mesh-anisotropic.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -54,9 +54,9 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH

Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/block_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/block_mesh.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/block_mesh.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -51,9 +51,9 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH

Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/block_mesh-anisotropic.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/block_mesh-anisotropic.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/block_mesh-anisotropic.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -54,9 +54,9 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH

Modified: seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/block_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/block_mesh.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/block_mesh.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -51,9 +51,9 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH

Modified: seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/mesh_mount.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/mesh_mount.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/mesh_mount.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -227,10 +227,10 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH
 

Modified: seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/mesh_mount_stl.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/mesh_mount_stl.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/Mount_StHelens/mesh_mount_stl.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -187,10 +187,10 @@
 # cleanup
 os.system('rm -f topo_brick.stl topo_vol.stl topo_vol2.stl')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH
 

Modified: seismo/3D/SPECFEM3D/trunk/examples/fault_examples/splay_faults/splay_faults.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/fault_examples/splay_faults/splay_faults.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/fault_examples/splay_faults/splay_faults.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -199,8 +199,8 @@
 cubit.cmd('block 2 attribute index 4 3000')   # rho 
 cubit.cmd('block 2 attribute index 5 13')     # Q flag (see constants.h: IATTENUATION_ ... )
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT 
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT 
  
-cubit2specfem3d.export2SESAME('MESH')  
+cubit2specfem3d.export2SPECFEM3D('MESH')  
  
 # all files needed by SCOTCH are now in directory MESH 

Modified: seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv102/TPV102.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv102/TPV102.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv102/TPV102.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -40,9 +40,9 @@
 cubit.cmd('block 2 attribute index 4 2670')
 cubit.cmd('block 2 attribute index 5 13')  
  
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT 
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT 
  
-cubit2specfem3d.export2SESAME('MESH')  
+cubit2specfem3d.export2SPECFEM3D('MESH')  
 
 Au = [8]   # A_up
 Ad = [3]  # A_down

Modified: seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv103/TPV103.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv103/TPV103.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv103/TPV103.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -39,9 +39,9 @@
 cubit.cmd('block 2 attribute index 4 2670')
 cubit.cmd('block 2 attribute index 5 13')  
  
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT 
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT 
  
-cubit2specfem3d.export2SESAME('MESH')  
+cubit2specfem3d.export2SPECFEM3D('MESH')  
 
 Au = [8]   # A_up
 Ad = [3]  # A_down

Modified: seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv15/tpv15.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv15/tpv15.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv15/tpv15.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -236,7 +236,7 @@
 
 faultB = fault_input(2,Bu,Bd)
 
-##  FOR THE BULK (Seismic wave propagation part for SESAME)
+##  FOR THE BULK (Seismic wave propagation part for SPECFEM3D)
 
 ####### This is boundary_definition.py of GEOCUBIT 
 ##..... which extracts the bounding faces and defines them into blocks 
@@ -299,9 +299,9 @@
 cubit.cmd('block 6 attribute index 4 2670')   # rho 
 cubit.cmd('block 6 attribute index 5 13')     # Q flag (see constants.h: IATTENUATION_ ... ) 
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT 
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT 
  
-cubit2specfem3d.export2SESAME('MESH')  
+cubit2specfem3d.export2SPECFEM3D('MESH')  
  
 # all files needed by SCOTCH are now in directory MESH 
 

Modified: seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv16/TPV16.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv16/TPV16.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv16/TPV16.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -43,6 +43,6 @@
 cubit.cmd('block 2 attribute index 4 2670')
 cubit.cmd('block 2 attribute index 5 13')  
  
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT 
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT 
  
-cubit2specfem3d.export2SESAME('MESH')  
+cubit2specfem3d.export2SPECFEM3D('MESH')  

Modified: seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv5/tpv5.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv5/tpv5.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/fault_examples/tpv5/tpv5.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -102,7 +102,7 @@
 
 faultA = fault_input(1,Au,Ad)
 
-#  FOR THE BULK (Seismic wave propagation part for SESAME)
+#  FOR THE BULK (Seismic wave propagation part for SPECFEM3D)
 
 ###### This is boundary_definition.py of GEOCUBIT 
 #..... which extracts the bounding faces and defines them into blocks 
@@ -122,9 +122,9 @@
 cubit.cmd('block 1 attribute index 4 2670')   # rho 
 cubit.cmd('block 1 attribute index 5 13')     # Q flag (see constants.h: IATTENUATION_ ... ) 
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT 
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT 
  
-cubit2specfem3d.export2SESAME('MESH')  
+cubit2specfem3d.export2SPECFEM3D('MESH')  
  
 # all files needed by SCOTCH are now in directory MESH 
 

Modified: seismo/3D/SPECFEM3D/trunk/examples/homogeneous_acoustic/block_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/homogeneous_acoustic/block_mesh.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/homogeneous_acoustic/block_mesh.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -41,9 +41,9 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH

Modified: seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX27_elastic_no_absorbing/block_mesh-anisotropic.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX27_elastic_no_absorbing/block_mesh-anisotropic.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX27_elastic_no_absorbing/block_mesh-anisotropic.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -54,9 +54,9 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH

Modified: seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX27_elastic_no_absorbing/block_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX27_elastic_no_absorbing/block_mesh.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX27_elastic_no_absorbing/block_mesh.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -51,7 +51,7 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
 cubit2specfem3d.export2SPECFEM3D('MESH',hex27=True)

Modified: seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh-anisotropic.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh-anisotropic.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh-anisotropic.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -54,9 +54,9 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH

Modified: seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -52,9 +52,9 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH

Modified: seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_no_absorbing/block_mesh-anisotropic.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_no_absorbing/block_mesh-anisotropic.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_no_absorbing/block_mesh-anisotropic.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -54,9 +54,9 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH

Modified: seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_no_absorbing/block_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_no_absorbing/block_mesh.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/homogeneous_halfspace_HEX8_elastic_no_absorbing/block_mesh.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -51,9 +51,9 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH

Modified: seismo/3D/SPECFEM3D/trunk/examples/homogeneous_poroelastic/block_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/homogeneous_poroelastic/block_mesh.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/homogeneous_poroelastic/block_mesh.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -40,9 +40,9 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH

Modified: seismo/3D/SPECFEM3D/trunk/examples/layered_halfspace/2lay_mesh_boundary_fig8-nodoubling.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/layered_halfspace/2lay_mesh_boundary_fig8-nodoubling.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/layered_halfspace/2lay_mesh_boundary_fig8-nodoubling.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -103,10 +103,10 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH
 

Modified: seismo/3D/SPECFEM3D/trunk/examples/layered_halfspace/2lay_mesh_boundary_fig8.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/layered_halfspace/2lay_mesh_boundary_fig8.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/layered_halfspace/2lay_mesh_boundary_fig8.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -124,10 +124,10 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH
 

Modified: seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/README
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/README	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/meshfem3D_examples/socal1D/README	2013-09-20 18:34:57 UTC (rev 22815)
@@ -9,7 +9,7 @@
 
 Figures for comparison:
   socal1D_koma2004.png  -- 1D model meshed in SPECFEM3D_BASIN (Komatitsch et al. 2004)
-  socal1D_sesame.png    -- 1D model meshed here
+  socal1D.png    -- 1D model meshed here
 
 The resolution is similar to the the "2 s" accuracy mesh of Komatitsch et al. 2004 (DT = 0.011 s).
 It is the same size region as one slice (out of 168) of model m16 of Tape et al. (2009).
@@ -54,7 +54,7 @@
      this will create binary mesh files, e.g. "proc000***_external_mesh.bin"
      in directory OUTPUT_FILES/DATABASES_MPI/.
 
-     optional: If you have paraview, load the .vtk files (see socal1D_sesame.png).
+     optional: If you have paraview, load the .vtk files (see socal1D.png).
 
 4. run simulation:
 

Modified: seismo/3D/SPECFEM3D/trunk/examples/tomographic_model/tomoblock_mesh.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/tomographic_model/tomoblock_mesh.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/tomographic_model/tomoblock_mesh.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -45,9 +45,9 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH') 
+cubit2specfem3d.export2SPECFEM3D('MESH') 
 
 # all files needed by SCOTCH are now in directory MESH

Modified: seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_fig8-nodoubling.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_fig8-nodoubling.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_fig8-nodoubling.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -106,10 +106,10 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH
 

Modified: seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_fig8.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_fig8.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_fig8.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -104,10 +104,10 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH
 

Modified: seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_vertical.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_vertical.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_mesh_boundary_vertical.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -52,9 +52,9 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
 
 # all files needed by SCOTCH are now in directory MESH

Modified: seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_only-nodoubling.py
===================================================================
--- seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_only-nodoubling.py	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/examples/waterlayered_halfspace/waterlayer_only-nodoubling.py	2013-09-20 18:34:57 UTC (rev 22815)
@@ -102,10 +102,10 @@
 cubit.cmd('export mesh "top.e" dimension 3 overwrite')
 cubit.cmd('save as "meshing.cub" overwrite')
 
-#### Export to SESAME format using cubit2specfem3d.py of GEOCUBIT
+#### Export to SPECFEM3D format using cubit2specfem3d.py of GEOCUBIT
 
 os.system('mkdir -p MESH')
-cubit2specfem3d.export2SESAME('MESH') 
+cubit2specfem3d.export2SPECFEM3D('MESH') 
 
 # all files needed by SCOTCH are now in directory MESH
 

Modified: seismo/3D/SPECFEM3D/trunk/src/decompose_mesh/fault_scotch.f90
===================================================================
--- seismo/3D/SPECFEM3D/trunk/src/decompose_mesh/fault_scotch.f90	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/src/decompose_mesh/fault_scotch.f90	2013-09-20 18:34:57 UTC (rev 22815)
@@ -117,7 +117,7 @@
 
 
 ! ---------------------------------------------------------------------------------------------------
-! Saving nodes_coords to be used in SESAME for ibool_fault_side1 and side2
+! Saving nodes_coords to be used in the solver for ibool_fault_side1 and side2
    subroutine save_nodes_coords(nodes_coords,nnodes)
 
    integer, intent(in) :: nnodes

Modified: seismo/3D/SPECFEM3D/trunk/src/generate_databases/generate_databases.f90
===================================================================
--- seismo/3D/SPECFEM3D/trunk/src/generate_databases/generate_databases.f90	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/src/generate_databases/generate_databases.f90	2013-09-20 18:34:57 UTC (rev 22815)
@@ -159,7 +159,7 @@
 ! Evolution of the code:
 ! ---------------------
 !
-! MPI v. 2.0 "Sesame" (Spectral ElementS on Any MEsh), November 2010:
+! MPI v. 2.0, November 2010:
 ! Dimitri Komatitsch, Nicolas Le Goff, Roland Martin and Pieyre Le Loher, University of Pau, France,
 ! Daniel Peter, Jeroen Tromp and the Princeton group of developers, Princeton University, USA,
 ! and Emanuele Casarotti, INGV Roma, Italy:

Modified: seismo/3D/SPECFEM3D/trunk/src/specfem3D/fault_solver_common.f90
===================================================================
--- seismo/3D/SPECFEM3D/trunk/src/specfem3D/fault_solver_common.f90	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/src/specfem3D/fault_solver_common.f90	2013-09-20 18:34:57 UTC (rev 22815)
@@ -514,7 +514,7 @@
     write(IOUT,*) "# problem=TPV104" ! WARNING: this should be a user input
     write(IOUT,*) "# author=Surendra Nadh Somala" ! WARNING: this should be a user input
     write(IOUT,1000) time_values(2), time_values(3), time_values(1), time_values(5), time_values(6), time_values(7)
-    write(IOUT,*) "# code=SPECFEM3D_SESAME (split nodes)"
+    write(IOUT,*) "# code=SPECFEM3D_Cartesian (split nodes)"
     write(IOUT,*) "# code_version=1.1"
     write(IOUT,*) "# element_size=100 m  (*5 GLL nodes)" ! WARNING: this should be a user input
     write(IOUT,*) "# time_step=",dataT%dt

Modified: seismo/3D/SPECFEM3D/trunk/src/specfem3D/fault_solver_dynamic.f90
===================================================================
--- seismo/3D/SPECFEM3D/trunk/src/specfem3D/fault_solver_dynamic.f90	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/src/specfem3D/fault_solver_dynamic.f90	2013-09-20 18:34:57 UTC (rev 22815)
@@ -949,7 +949,7 @@
   write(IOUT,*) "# problem=TPV104"
   write(IOUT,*) "# author=Surendra Nadh Somala"
   write(IOUT,1000) time_values(2), time_values(3), time_values(1), time_values(5), time_values(6), time_values(7)
-  write(IOUT,*) "# code=SPECFEM3D_SESAME (split nodes)"
+  write(IOUT,*) "# code=SPECFEM3D_Cartesian (split nodes)"
   write(IOUT,*) "# code_version=1.1"
   write(IOUT,*) "# element_size=100 m  (*5 GLL nodes)"
   write(IOUT,*) "# Column #1 = horizontal coordinate, distance along strike (m)"

Modified: seismo/3D/SPECFEM3D/trunk/src/specfem3D/noise_tomography.f90
===================================================================
--- seismo/3D/SPECFEM3D/trunk/src/specfem3D/noise_tomography.f90	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/src/specfem3D/noise_tomography.f90	2013-09-20 18:34:57 UTC (rev 22815)
@@ -103,7 +103,7 @@
   !*****************************************************************************************************************
   !******************************** change your noise characteristics below ****************************************
   !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! noise direction
-  !!!!! here, the noise is assumed to be vertical (SESAME)
+  !!!!! here, the noise is assumed to be vertical
   normal_x_noise_out = 0.0
   normal_y_noise_out = 0.0
   normal_z_noise_out = 1.0
@@ -188,7 +188,7 @@
   !*****************************************************************************************************************
   !******************************** change your noise characteristics below ****************************************
   !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! noise direction
-  !!!!! here, the noise is assumed to be vertical (SESAME)
+  !!!!! here, the noise is assumed to be vertical
   normal_x_noise_out = 0.0
   normal_y_noise_out = 0.0
   normal_z_noise_out = 1.0

Deleted: seismo/3D/SPECFEM3D/trunk/utils/unused_routines/attenuation/makefile.csh
===================================================================
--- seismo/3D/SPECFEM3D/trunk/utils/unused_routines/attenuation/makefile.csh	2013-09-20 18:21:28 UTC (rev 22814)
+++ seismo/3D/SPECFEM3D/trunk/utils/unused_routines/attenuation/makefile.csh	2013-09-20 18:34:57 UTC (rev 22815)
@@ -1,10 +0,0 @@
-#!/bin/csh
-
-# code to compute attenuation constants for SPECFEM3D_SESAME code
-
-rm -f xcompute
-gcc -o xcompute attenuation_sesame.c -lm
-
-echo "code has been compiled"
-echo "run it with:  xcompute "
-

