[cig-commits] commit 2505 by heister to /var/svn/dealii/aspect

dealii.demon at gmail.com dealii.demon at gmail.com
Sun Apr 13 07:49:27 PDT 2014


Revision 2505

doxygen comment layout and rewrapping

U   trunk/aspect/include/aspect/adiabatic_conditions.h
U   trunk/aspect/include/aspect/boundary_composition/box.h
U   trunk/aspect/include/aspect/boundary_composition/initial_composition.h
U   trunk/aspect/include/aspect/boundary_composition/interface.h
U   trunk/aspect/include/aspect/boundary_composition/spherical_constant.h
U   trunk/aspect/include/aspect/boundary_temperature/box.h
U   trunk/aspect/include/aspect/boundary_temperature/constant.h
U   trunk/aspect/include/aspect/boundary_temperature/initial_temperature.h
U   trunk/aspect/include/aspect/boundary_temperature/interface.h
U   trunk/aspect/include/aspect/boundary_temperature/spherical_constant.h
U   trunk/aspect/include/aspect/boundary_temperature/tan_gurnis.h
U   trunk/aspect/include/aspect/compositional_initial_conditions/function.h
U   trunk/aspect/include/aspect/compositional_initial_conditions/interface.h
U   trunk/aspect/include/aspect/geometry_model/box.h
U   trunk/aspect/include/aspect/geometry_model/interface.h
U   trunk/aspect/include/aspect/geometry_model/sphere.h
U   trunk/aspect/include/aspect/geometry_model/spherical_shell.h
U   trunk/aspect/include/aspect/global.h
U   trunk/aspect/include/aspect/gravity_model/interface.h
U   trunk/aspect/include/aspect/gravity_model/radial.h
U   trunk/aspect/include/aspect/gravity_model/vertical.h
U   trunk/aspect/include/aspect/initial_conditions/adiabatic.h
U   trunk/aspect/include/aspect/initial_conditions/box.h
U   trunk/aspect/include/aspect/initial_conditions/function.h
U   trunk/aspect/include/aspect/initial_conditions/harmonic_perturbation.h
U   trunk/aspect/include/aspect/initial_conditions/interface.h
U   trunk/aspect/include/aspect/initial_conditions/spherical_shell.h
U   trunk/aspect/include/aspect/introspection.h
U   trunk/aspect/include/aspect/material_model/duretz_et_al.h
U   trunk/aspect/include/aspect/material_model/interface.h
U   trunk/aspect/include/aspect/material_model/latent_heat.h
U   trunk/aspect/include/aspect/material_model/simple.h
U   trunk/aspect/include/aspect/material_model/steinberger.h
U   trunk/aspect/include/aspect/material_model/table.h
U   trunk/aspect/include/aspect/material_model/tan_gurnis.h
U   trunk/aspect/include/aspect/mesh_refinement/composition.h
U   trunk/aspect/include/aspect/mesh_refinement/density.h
U   trunk/aspect/include/aspect/mesh_refinement/interface.h
U   trunk/aspect/include/aspect/mesh_refinement/nonadiabatic_temperature.h
U   trunk/aspect/include/aspect/mesh_refinement/temperature.h
U   trunk/aspect/include/aspect/mesh_refinement/thermal_energy_density.h
U   trunk/aspect/include/aspect/mesh_refinement/topography.h
U   trunk/aspect/include/aspect/mesh_refinement/velocity.h
U   trunk/aspect/include/aspect/mesh_refinement/viscosity.h
U   trunk/aspect/include/aspect/particle/generator.h
U   trunk/aspect/include/aspect/particle/integrator.h
U   trunk/aspect/include/aspect/particle/output.h
U   trunk/aspect/include/aspect/particle/particle.h
U   trunk/aspect/include/aspect/particle/world.h
U   trunk/aspect/include/aspect/plugins.h
U   trunk/aspect/include/aspect/postprocess/composition_statistics.h
U   trunk/aspect/include/aspect/postprocess/depth_average.h
U   trunk/aspect/include/aspect/postprocess/duretz_et_al.h
U   trunk/aspect/include/aspect/postprocess/dynamic_topography.h
U   trunk/aspect/include/aspect/postprocess/heat_flux_statistics.h
U   trunk/aspect/include/aspect/postprocess/interface.h
U   trunk/aspect/include/aspect/postprocess/table_heat_flux_statistics.h
U   trunk/aspect/include/aspect/postprocess/table_velocity_statistics.h
U   trunk/aspect/include/aspect/postprocess/tan_gurnis.h
U   trunk/aspect/include/aspect/postprocess/temperature_statistics.h
U   trunk/aspect/include/aspect/postprocess/tracer.h
U   trunk/aspect/include/aspect/postprocess/velocity_statistics.h
U   trunk/aspect/include/aspect/postprocess/visualization/artificial_viscosity.h
U   trunk/aspect/include/aspect/postprocess/visualization/density.h
U   trunk/aspect/include/aspect/postprocess/visualization/dynamic_topography.h
U   trunk/aspect/include/aspect/postprocess/visualization/error_indicator.h
U   trunk/aspect/include/aspect/postprocess/visualization/friction_heating.h
U   trunk/aspect/include/aspect/postprocess/visualization/melt_fraction.h
U   trunk/aspect/include/aspect/postprocess/visualization/nonadiabatic_pressure.h
U   trunk/aspect/include/aspect/postprocess/visualization/nonadiabatic_temperature.h
U   trunk/aspect/include/aspect/postprocess/visualization/partition.h
U   trunk/aspect/include/aspect/postprocess/visualization/seismic_anomalies.h
U   trunk/aspect/include/aspect/postprocess/visualization/seismic_vp.h
U   trunk/aspect/include/aspect/postprocess/visualization/seismic_vs.h
U   trunk/aspect/include/aspect/postprocess/visualization/specific_heat.h
U   trunk/aspect/include/aspect/postprocess/visualization/strain_rate.h
U   trunk/aspect/include/aspect/postprocess/visualization/thermal_expansivity.h
U   trunk/aspect/include/aspect/postprocess/visualization/thermodynamic_phase.h
U   trunk/aspect/include/aspect/postprocess/visualization/viscosity.h
U   trunk/aspect/include/aspect/postprocess/visualization/viscosity_ratio.h
U   trunk/aspect/include/aspect/postprocess/visualization.h
U   trunk/aspect/include/aspect/simulator.h
U   trunk/aspect/include/aspect/simulator_access.h
U   trunk/aspect/include/aspect/termination_criteria/end_step.h
U   trunk/aspect/include/aspect/termination_criteria/end_time.h
U   trunk/aspect/include/aspect/termination_criteria/interface.h
U   trunk/aspect/include/aspect/termination_criteria/steady_rms_velocity.h
U   trunk/aspect/include/aspect/termination_criteria/user_request.h
U   trunk/aspect/include/aspect/velocity_boundary_conditions/function.h
U   trunk/aspect/include/aspect/velocity_boundary_conditions/gplates.h
U   trunk/aspect/include/aspect/velocity_boundary_conditions/interface.h


http://www.dealii.org/websvn/revision.php?repname=Aspect+Repository&path=%2F&rev=2505&peg=2505

Diff:
Modified: trunk/aspect/include/aspect/adiabatic_conditions.h
===================================================================
--- trunk/aspect/include/aspect/adiabatic_conditions.h	2014-04-13 14:37:05 UTC (rev 2504)
+++ trunk/aspect/include/aspect/adiabatic_conditions.h	2014-04-13 14:49:25 UTC (rev 2505)
@@ -37,13 +37,14 @@
 
 
   /**
-   * A class that represents adiabatic conditions, i.e. that starts at the top of
-   * the domain and integrates pressure and temperature as we go down into depth.
+   * A class that represents adiabatic conditions, i.e. that starts at the top
+   * of the domain and integrates pressure and temperature as we go down into
+   * depth.
    *
-   * @note The implementation has numerous deficiencies indicated in the .cc file
-   * and may not quite compute what we want. Specifically, it doesn't currently
-   * take into account all the physical parameters it needs, and it also doesn't
-   * get gravity right with the exception of the simplest cases.
+   * @note The implementation has numerous deficiencies indicated in the .cc
+   * file and may not quite compute what we want. Specifically, it doesn't
+   * currently take into account all the physical parameters it needs, and it
+   * also doesn't get gravity right with the exception of the simplest cases.
    */
   template <int dim>
   class AdiabaticConditions
@@ -51,8 +52,8 @@
     public:
       /**
        * Constructor. Compute the adiabatic conditions along a vertical
-       * transect of the geometry based on the given material model
-       * and other quantities.
+       * transect of the geometry based on the given material model and other
+       * quantities.
        */
       AdiabaticConditions (const GeometryModel::Interface<dim> &geometry_model,
                            const GravityModel::Interface<dim>  &gravity_model,
@@ -68,12 +69,12 @@
       double temperature (const Point<dim> &p) const;
 
       /**
-       * Return the adiabatic temperature profile as a vector of values corresponding
-       * to increasing depth.
+       * Return the adiabatic temperature profile as a vector of values
+       * corresponding to increasing depth.
        *
-       * @param values The output vector of depth averaged values.
-       * The function takes the pre-existing size of this vector
-       * as the number of depth slices.
+       * @param values The output vector of depth averaged values. The
+       * function takes the pre-existing size of this vector as the number of
+       * depth slices.
        */
       void get_adiabatic_temperature_profile(std::vector<double> &values) const;
 
@@ -90,8 +91,8 @@
 
       /**
        * Vectors of values of temperatures and pressures on a transect into
-       * depth at which we have computed them. The public member functions
-       * of this class interpolate linearly between these points.
+       * depth at which we have computed them. The public member functions of
+       * this class interpolate linearly between these points.
        */
       std::vector<double> temperatures, pressures;
 
@@ -103,9 +104,8 @@
 
       /**
        * A reference to the geometry model which we need when converting
-       * between arbitrary points at which temperature and pressure
-       * are interpolated and the depth coordinate we use to pre-compute
-       * values.
+       * between arbitrary points at which temperature and pressure are
+       * interpolated and the depth coordinate we use to pre-compute values.
        */
       const GeometryModel::Interface<dim> &geometry_model;
   };

Modified: trunk/aspect/include/aspect/boundary_composition/box.h
===================================================================
--- trunk/aspect/include/aspect/boundary_composition/box.h	2014-04-13 14:37:05 UTC (rev 2504)
+++ trunk/aspect/include/aspect/boundary_composition/box.h	2014-04-13 14:49:25 UTC (rev 2505)
@@ -43,18 +43,19 @@
     {
       public:
         /**
-         * Return the composition that is to hold at a particular location on the
-         * boundary of the domain. This function returns constant compositions
-         * at the left and right boundaries.
+         * Return the composition that is to hold at a particular location on
+         * the boundary of the domain. This function returns constant
+         * compositions at the left and right boundaries.
          *
-         * @param geometry_model The geometry model that describes the domain. This may
-         *   be used to determine whether the boundary composition model is implemented
-         *   for this geometry.
-         * @param boundary_indicator The boundary indicator of the part of the boundary
-         *   of the domain on which the point is located at which we are requesting the
-         *   composition.
-         * @param location The location of the point at which we ask for the composition.
-         **/
+         * @param geometry_model The geometry model that describes the domain.
+         * This may be used to determine whether the boundary composition
+         * model is implemented for this geometry.
+         * @param boundary_indicator The boundary indicator of the part of the
+         * boundary of the domain on which the point is located at which we
+         * are requesting the composition.
+         * @param location The location of the point at which we ask for the
+         * composition.
+         */
         virtual
         double composition (const GeometryModel::Interface<dim> &geometry_model,
                             const unsigned int                   boundary_indicator,
@@ -62,16 +63,15 @@
                             const unsigned int                   compositional_field) const;
 
         /**
-         * Declare the parameters this class takes through input files.
-         * This class declares the inner and outer boundary compositions.
+         * Declare the parameters this class takes through input files. This
+         * class declares the inner and outer boundary compositions.
          */
         static
         void
         declare_parameters (ParameterHandler &prm);
 
         /**
-         * Read the parameters this class declares from the parameter
-         * file.
+         * Read the parameters this class declares from the parameter file.
          */
         virtual
         void
@@ -79,19 +79,19 @@
 
         /**
          * Initialize this class for a given simulator. This function
-         * overloads that of the SimulatorAccess base class. It calls
-         * the respective function of the base class and then performs
-         * some basic sanity checks on the parameter values previously
-         * read from the input file.
+         * overloads that of the SimulatorAccess base class. It calls the
+         * respective function of the base class and then performs some basic
+         * sanity checks on the parameter values previously read from the
+         * input file.
          *
          * @param simulator A reference to the main simulator object.
-         **/
+         */
         virtual void initialize (const Simulator<dim> &simulator);
 
       private:
         /**
-         * The values of the various composition variables on each of the 2*dim
-         * boundaries of the box.
+         * The values of the various composition variables on each of the
+         * 2*dim boundaries of the box.
          */
         std::vector<double> composition_values[2*dim];
     };

Modified: trunk/aspect/include/aspect/boundary_composition/initial_composition.h
===================================================================
--- trunk/aspect/include/aspect/boundary_composition/initial_composition.h	2014-04-13 14:37:05 UTC (rev 2504)
+++ trunk/aspect/include/aspect/boundary_composition/initial_composition.h	2014-04-13 14:49:25 UTC (rev 2505)
@@ -32,10 +32,10 @@
   namespace BoundaryComposition
   {
     /**
-     * A class that implements a composition boundary condition for a spherical
-     * shell geometry in which the composition at the inner and outer surfaces
-     * (i.e. at the core-mantle and the mantle-lithosphere/atmosphere boundaries)
-     * are constant.
+     * A class that implements a composition boundary condition for a
+     * spherical shell geometry in which the composition at the inner and
+     * outer surfaces (i.e. at the core-mantle and the mantle-
+     * lithosphere/atmosphere boundaries) are constant.
      *
      * @ingroup BoundaryCompositions
      */
@@ -44,18 +44,20 @@
     {
       public:
         /**
-         * Return the composition that is to hold at a particular location on the
-         * boundary of the domain. This function returns the constant compositions
-         * read from the parameter file for the inner and outer boundaries.
+         * Return the composition that is to hold at a particular location on
+         * the boundary of the domain. This function returns the constant
+         * compositions read from the parameter file for the inner and outer
+         * boundaries.
          *
-         * @param geometry_model The geometry model that describes the domain. This may
-         *   be used to determine whether the boundary composition model is implemented
-         *   for this geometry.
-         * @param boundary_indicator The boundary indicator of the part of the boundary
-         *   of the domain on which the point is located at which we are requesting the
-         *   composition.
-         * @param location The location of the point at which we ask for the composition.
-         **/
+         * @param geometry_model The geometry model that describes the domain.
+         * This may be used to determine whether the boundary composition
+         * model is implemented for this geometry.
+         * @param boundary_indicator The boundary indicator of the part of the
+         * boundary of the domain on which the point is located at which we
+         * are requesting the composition.
+         * @param location The location of the point at which we ask for the
+         * composition.
+         */
         virtual
         double composition (const GeometryModel::Interface<dim> &geometry_model,
                             const unsigned int                   boundary_indicator,
@@ -63,8 +65,8 @@
                             const unsigned int                   compositional_field) const;
 
         /**
-         * Return the minimal composition on that part of the boundary
-         * on which Dirichlet conditions are posed.
+         * Return the minimal composition on that part of the boundary on
+         * which Dirichlet conditions are posed.
          *
          * This value is used in computing dimensionless numbers such as the
          * Nusselt number indicating heat flux.
@@ -73,8 +75,8 @@
         double minimal_composition (const std::set<types::boundary_id> &fixed_boundary_ids) const;
 
         /**
-         * Return the maximal composition on that part of the boundary
-         * on which Dirichlet conditions are posed.
+         * Return the maximal composition on that part of the boundary on
+         * which Dirichlet conditions are posed.
          *
          * This value is used in computing dimensionless numbers such as the
          * Nusselt number indicating heat flux.
@@ -83,16 +85,15 @@
         double maximal_composition (const std::set<types::boundary_id> &fixed_boundary_ids) const;
 
         /**
-         * Declare the parameters this class takes through input files.
-         * This class declares the inner and outer boundary compositions.
+         * Declare the parameters this class takes through input files. This
+         * class declares the inner and outer boundary compositions.
          */
         static
         void
         declare_parameters (ParameterHandler &prm);
 
         /**
-         * Read the parameters this class declares from the parameter
-         * file.
+         * Read the parameters this class declares from the parameter file.
          */
         virtual
         void

Modified: trunk/aspect/include/aspect/boundary_composition/interface.h
===================================================================
--- trunk/aspect/include/aspect/boundary_composition/interface.h	2014-04-13 14:37:05 UTC (rev 2504)
+++ trunk/aspect/include/aspect/boundary_composition/interface.h	2014-04-13 14:49:25 UTC (rev 2505)
@@ -58,19 +58,20 @@
         virtual ~Interface();
 
         /**
-         * Return the composition that is to hold at a particular location on the
-         * boundary of the domain.
+         * Return the composition that is to hold at a particular location on
+         * the boundary of the domain.
          *
-         * @param geometry_model The geometry model that describes the domain. This may
-         *   be used to determine whether the boundary composition model is implemented
-         *   for this geometry.
-         * @param boundary_indicator The boundary indicator of the part of the boundary
-         *   of the domain on which the point is located at which we are requesting the
-         *   composition.
-         * @param location The location of the point at which we ask for the composition.
-         * @param compositional_field The number of the compositional field for which we
+         * @param geometry_model The geometry model that describes the domain.
+         * This may be used to determine whether the boundary composition
+         * model is implemented for this geometry.
+         * @param boundary_indicator The boundary indicator of the part of the
+         * boundary of the domain on which the point is located at which we
          * are requesting the composition.
-         **/
+         * @param location The location of the point at which we ask for the
+         * composition.
+         * @param compositional_field The number of the compositional field
+         * for which we are requesting the composition.
+         */
         virtual
         double composition (const GeometryModel::Interface<dim> &geometry_model,
                             const unsigned int                   boundary_indicator,
@@ -78,20 +79,20 @@
                             const unsigned int                   compositional_field) const = 0;
 
         /**
-         * Declare the parameters this class takes through input files.
-         * The default implementation of this function does not describe
-         * any parameters. Consequently, derived classes do not have to
-         * overload this function if they do not take any runtime parameters.
+         * Declare the parameters this class takes through input files. The
+         * default implementation of this function does not describe any
+         * parameters. Consequently, derived classes do not have to overload
+         * this function if they do not take any runtime parameters.
          */
         static
         void
         declare_parameters (ParameterHandler &prm);
 
         /**
-         * Read the parameters this class declares from the parameter
-         * file. The default implementation of this function does not read
-         * any parameters. Consequently, derived classes do not have to
-         * overload this function if they do not take any runtime parameters.
+         * Read the parameters this class declares from the parameter file.
+         * The default implementation of this function does not read any
+         * parameters. Consequently, derived classes do not have to overload
+         * this function if they do not take any runtime parameters.
          */
         virtual
         void
@@ -100,16 +101,17 @@
 
 
     /**
-     * Register a boundary composition model so that it can be selected from the parameter file.
+     * Register a boundary composition model so that it can be selected from
+     * the parameter file.
      *
      * @param name A string that identifies the boundary composition model
-     * @param description A text description of what this model
-     * does and that will be listed in the documentation of
-     * the parameter file.
-     * @param declare_parameters_function A pointer to a function that can be used to
-     *   declare the parameters that this geometry model wants to read from input files.
-     * @param factory_function A pointer to a function that can create an object of
-     *   this boundary composition model.
+     * @param description A text description of what this model does and that
+     * will be listed in the documentation of the parameter file.
+     * @param declare_parameters_function A pointer to a function that can be
+     * used to declare the parameters that this geometry model wants to read
+     * from input files.
+     * @param factory_function A pointer to a function that can create an
+     * object of this boundary composition model.
      *
      * @ingroup BoundaryCompositions
      */
@@ -121,8 +123,9 @@
                                    Interface<dim> *(*factory_function) ());
 
     /**
-     * A function that given the name of a model returns a pointer to an object
-     * that describes it. Ownership of the pointer is transferred to the caller.
+     * A function that given the name of a model returns a pointer to an
+     * object that describes it. Ownership of the pointer is transferred to
+     * the caller.
      *
      * @ingroup BoundaryCompositions
      */
@@ -132,7 +135,8 @@
 
 
     /**
-     * Declare the runtime parameters of the registered boundary composition models.
+     * Declare the runtime parameters of the registered boundary composition
+     * models.
      *
      * @ingroup BoundaryCompositions
      */
@@ -142,8 +146,9 @@
 
 
     /**
-     * Given a class name, a name, and a description for the parameter file for a boundary composition model, register it with
-     * the functions that can declare their parameters and create these objects.
+     * Given a class name, a name, and a description for the parameter file
+     * for a boundary composition model, register it with the functions that
+     * can declare their parameters and create these objects.
      *
      * @ingroup BoundaryCompositions
      */

Modified: trunk/aspect/include/aspect/boundary_composition/spherical_constant.h
===================================================================
--- trunk/aspect/include/aspect/boundary_composition/spherical_constant.h	2014-04-13 14:37:05 UTC (rev 2504)
+++ trunk/aspect/include/aspect/boundary_composition/spherical_constant.h	2014-04-13 14:49:25 UTC (rev 2505)
@@ -31,10 +31,10 @@
   namespace BoundaryComposition
   {
     /**
-     * A class that implements a composition boundary condition for a spherical
-     * shell geometry in which the composition at the inner and outer surfaces
-     * (i.e. at the core-mantle and the mantle-lithosphere/atmosphere boundaries)
-     * are constant.
+     * A class that implements a composition boundary condition for a
+     * spherical shell geometry in which the composition at the inner and
+     * outer surfaces (i.e. at the core-mantle and the mantle-
+     * lithosphere/atmosphere boundaries) are constant.
      *
      * @ingroup BoundaryCompositions
      */
@@ -43,18 +43,20 @@
     {
       public:
         /**
-         * Return the composition that is to hold at a particular location on the
-         * boundary of the domain. This function returns the constant compositions
-         * read from the parameter file for the inner and outer boundaries.
+         * Return the composition that is to hold at a particular location on
+         * the boundary of the domain. This function returns the constant
+         * compositions read from the parameter file for the inner and outer
+         * boundaries.
          *
-         * @param geometry_model The geometry model that describes the domain. This may
-         *   be used to determine whether the boundary composition model is implemented
-         *   for this geometry.
-         * @param boundary_indicator The boundary indicator of the part of the boundary
-         *   of the domain on which the point is located at which we are requesting the
-         *   composition.
-         * @param location The location of the point at which we ask for the composition.
-         **/
+         * @param geometry_model The geometry model that describes the domain.
+         * This may be used to determine whether the boundary composition
+         * model is implemented for this geometry.
+         * @param boundary_indicator The boundary indicator of the part of the
+         * boundary of the domain on which the point is located at which we
+         * are requesting the composition.
+         * @param location The location of the point at which we ask for the
+         * composition.
+         */
         virtual
         double composition (const GeometryModel::Interface<dim> &geometry_model,
                             const unsigned int                   boundary_indicator,
@@ -62,8 +64,8 @@
                             const unsigned int                   compositional_field) const;
 
         /**
-         * Return the minimal composition on that part of the boundary
-         * on which Dirichlet conditions are posed.
+         * Return the minimal composition on that part of the boundary on
+         * which Dirichlet conditions are posed.
          *
          * This value is used in computing dimensionless numbers such as the
          * Nusselt number indicating heat flux.
@@ -72,8 +74,8 @@
         double minimal_composition (const std::set<types::boundary_id> &fixed_boundary_ids) const;
 
         /**
-         * Return the maximal composition on that part of the boundary
-         * on which Dirichlet conditions are posed.
+         * Return the maximal composition on that part of the boundary on
+         * which Dirichlet conditions are posed.
          *
          * This value is used in computing dimensionless numbers such as the
          * Nusselt number indicating heat flux.
@@ -82,16 +84,15 @@
         double maximal_composition (const std::set<types::boundary_id> &fixed_boundary_ids) const;
 
         /**
-         * Declare the parameters this class takes through input files.
-         * This class declares the inner and outer boundary compositions.
+         * Declare the parameters this class takes through input files. This
+         * class declares the inner and outer boundary compositions.
          */
         static
         void
         declare_parameters (ParameterHandler &prm);
 
         /**
-         * Read the parameters this class declares from the parameter
-         * file.
+         * Read the parameters this class declares from the parameter file.
          */
         virtual
         void

Modified: trunk/aspect/include/aspect/boundary_temperature/box.h
===================================================================
--- trunk/aspect/include/aspect/boundary_temperature/box.h	2014-04-13 14:37:05 UTC (rev 2504)
+++ trunk/aspect/include/aspect/boundary_temperature/box.h	2014-04-13 14:49:25 UTC (rev 2505)
@@ -41,26 +41,27 @@
     {
       public:
         /**
-         * Return the temperature that is to hold at a particular location on the
-         * boundary of the domain. This function returns constant temperatures
-         * at the left and right boundaries.
+         * Return the temperature that is to hold at a particular location on
+         * the boundary of the domain. This function returns constant
+         * temperatures at the left and right boundaries.
          *
-         * @param geometry_model The geometry model that describes the domain. This may
-         *   be used to determine whether the boundary temperature model is implemented
-         *   for this geometry.
-         * @param boundary_indicator The boundary indicator of the part of the boundary
-         *   of the domain on which the point is located at which we are requesting the
-         *   temperature.
-         * @param location The location of the point at which we ask for the temperature.
-         **/
+         * @param geometry_model The geometry model that describes the domain.
+         * This may be used to determine whether the boundary temperature
+         * model is implemented for this geometry.
+         * @param boundary_indicator The boundary indicator of the part of the
+         * boundary of the domain on which the point is located at which we
+         * are requesting the temperature.
+         * @param location The location of the point at which we ask for the
+         * temperature.
+         */
         virtual
         double temperature (const GeometryModel::Interface<dim> &geometry_model,
                             const unsigned int                   boundary_indicator,
                             const Point<dim>                    &location) const;
 
         /**
-         * Return the minimal the temperature on that part of the boundary
-         * on which Dirichlet conditions are posed.
+         * Return the minimal the temperature on that part of the boundary on
+         * which Dirichlet conditions are posed.
          *
          * This value is used in computing dimensionless numbers such as the
          * Nusselt number indicating heat flux.
@@ -69,8 +70,8 @@
         double minimal_temperature (const std::set<types::boundary_id> &fixed_boundary_ids) const;
 
         /**
-         * Return the maximal the temperature on that part of the boundary
-         * on which Dirichlet conditions are posed.
+         * Return the maximal the temperature on that part of the boundary on
+         * which Dirichlet conditions are posed.
          *
          * This value is used in computing dimensionless numbers such as the
          * Nusselt number indicating heat flux.
@@ -79,16 +80,15 @@
         double maximal_temperature (const std::set<types::boundary_id> &fixed_boundary_ids) const;
 
         /**
-         * Declare the parameters this class takes through input files.
-         * This class declares the inner and outer boundary temperatures.
+         * Declare the parameters this class takes through input files. This
+         * class declares the inner and outer boundary temperatures.
          */
         static
         void
         declare_parameters (ParameterHandler &prm);
 
         /**
-         * Read the parameters this class declares from the parameter
-         * file.
+         * Read the parameters this class declares from the parameter file.
          */
         virtual
         void

Modified: trunk/aspect/include/aspect/boundary_temperature/constant.h
===================================================================
--- trunk/aspect/include/aspect/boundary_temperature/constant.h	2014-04-13 14:37:05 UTC (rev 2504)
+++ trunk/aspect/include/aspect/boundary_temperature/constant.h	2014-04-13 14:49:25 UTC (rev 2505)
@@ -31,10 +31,10 @@
   namespace BoundaryTemperature
   {
     /**
-     * A class that implements a temperature boundary condition for an arbitrary
-     * geometry, where it returns a constant value for a given boundary indicator.
-     * Takes an ordered list of temperatures, where the position in the list
-     * corresponds to the indicator for that temperature.
+     * A class that implements a temperature boundary condition for an
+     * arbitrary geometry, where it returns a constant value for a given
+     * boundary indicator. Takes an ordered list of temperatures, where the
+     * position in the list corresponds to the indicator for that temperature.
      *
      * @ingroup BoundaryTemperatures
      */
@@ -43,26 +43,27 @@
     {
       public:
         /**
-         * Return the temperature that is to hold at a particular location on the
-         * boundary of the domain. This function returns the constant temperatures
-         * read from the parameter file.
+         * Return the temperature that is to hold at a particular location on
+         * the boundary of the domain. This function returns the constant
+         * temperatures read from the parameter file.
          *
-         * @param geometry_model The geometry model that describes the domain. This may
-         *   be used to determine whether the boundary temperature model is implemented
-         *   for this geometry.
-         * @param boundary_indicator The boundary indicator of the part of the boundary
-         *   of the domain on which the point is located at which we are requesting the
-         *   temperature.
-         * @param location The location of the point at which we ask for the temperature.
-         **/
+         * @param geometry_model The geometry model that describes the domain.
+         * This may be used to determine whether the boundary temperature
+         * model is implemented for this geometry.
+         * @param boundary_indicator The boundary indicator of the part of the
+         * boundary of the domain on which the point is located at which we
+         * are requesting the temperature.
+         * @param location The location of the point at which we ask for the
+         * temperature.
+         */
         virtual
         double temperature (const GeometryModel::Interface<dim> &geometry_model,
                             const unsigned int                   boundary_indicator,
                             const Point<dim>                    &location) const;
 
         /**
-         * Return the minimal the temperature on that part of the boundary
-         * on which Dirichlet conditions are posed.
+         * Return the minimal the temperature on that part of the boundary on
+         * which Dirichlet conditions are posed.
          *
          * This value is used in computing dimensionless numbers such as the
          * Nusselt number indicating heat flux.
@@ -71,8 +72,8 @@
         double minimal_temperature (const std::set<types::boundary_id> &fixed_boundary_ids) const;
 
         /**
-         * Return the maximal the temperature on that part of the boundary
-         * on which Dirichlet conditions are posed.
+         * Return the maximal the temperature on that part of the boundary on
+         * which Dirichlet conditions are posed.
          *
          * This value is used in computing dimensionless numbers such as the
          * Nusselt number indicating heat flux.
@@ -81,16 +82,15 @@
         double maximal_temperature (const std::set<types::boundary_id> &fixed_boundary_ids) const;
 
         /**
-         * Declare the parameters this class takes through input files.
-         * This class declares the inner and outer boundary temperatures.
+         * Declare the parameters this class takes through input files. This
+         * class declares the inner and outer boundary temperatures.
          */
         static
         void
         declare_parameters (ParameterHandler &prm);
 
         /**
-         * Read the parameters this class declares from the parameter
-         * file.
+         * Read the parameters this class declares from the parameter file.
          */
         virtual
         void

Modified: trunk/aspect/include/aspect/boundary_temperature/initial_temperature.h
===================================================================
--- trunk/aspect/include/aspect/boundary_temperature/initial_temperature.h	2014-04-13 14:37:05 UTC (rev 2504)
+++ trunk/aspect/include/aspect/boundary_temperature/initial_temperature.h	2014-04-13 14:49:25 UTC (rev 2505)
@@ -31,9 +31,9 @@
   namespace BoundaryTemperature
   {
     /**
-     * A class that implements a temperature boundary condition for an arbitrary
-     * geometry in which the temperature at the boundaries are the same as in the
-     * initial conditions.
+     * A class that implements a temperature boundary condition for an
+     * arbitrary geometry in which the temperature at the boundaries are the
+     * same as in the initial conditions.
      *
      * @ingroup BoundaryTemperatures
      */
@@ -42,26 +42,28 @@
     {
       public:
         /**
-         * Return the temperature that is to hold at a particular location on the
-         * boundary of the domain. This function returns the constant temperatures
-         * read from the parameter file for the inner and outer boundaries.
+         * Return the temperature that is to hold at a particular location on
+         * the boundary of the domain. This function returns the constant
+         * temperatures read from the parameter file for the inner and outer
+         * boundaries.
          *
-         * @param geometry_model The geometry model that describes the domain. This may
-         *   be used to determine whether the boundary temperature model is implemented
-         *   for this geometry.
-         * @param boundary_indicator The boundary indicator of the part of the boundary
-         *   of the domain on which the point is located at which we are requesting the
-         *   temperature.
-         * @param location The location of the point at which we ask for the temperature.
-         **/
+         * @param geometry_model The geometry model that describes the domain.
+         * This may be used to determine whether the boundary temperature
+         * model is implemented for this geometry.
+         * @param boundary_indicator The boundary indicator of the part of the
+         * boundary of the domain on which the point is located at which we
+         * are requesting the temperature.
+         * @param location The location of the point at which we ask for the
+         * temperature.
+         */
         virtual
         double temperature (const GeometryModel::Interface<dim> &geometry_model,
                             const unsigned int                   boundary_indicator,
                             const Point<dim>                    &location) const;
 
         /**
-         * Return the minimal the temperature on that part of the boundary
-         * on which Dirichlet conditions are posed.
+         * Return the minimal the temperature on that part of the boundary on
+         * which Dirichlet conditions are posed.
          *
          * This value is used in computing dimensionless numbers such as the
          * Nusselt number indicating heat flux.
@@ -70,8 +72,8 @@
         double minimal_temperature (const std::set<types::boundary_id> &fixed_boundary_ids) const;
 
         /**
-         * Return the maximal the temperature on that part of the boundary
-         * on which Dirichlet conditions are posed.
+         * Return the maximal the temperature on that part of the boundary on
+         * which Dirichlet conditions are posed.
          *
          * This value is used in computing dimensionless numbers such as the
          * Nusselt number indicating heat flux.
@@ -80,16 +82,15 @@
         double maximal_temperature (const std::set<types::boundary_id> &fixed_boundary_ids) const;
 
         /**
-         * Declare the parameters this class takes through input files.
-         * This class declares the inner and outer boundary temperatures.
+         * Declare the parameters this class takes through input files. This
+         * class declares the inner and outer boundary temperatures.
          */
         static
         void
         declare_parameters (ParameterHandler &prm);
 
         /**
-         * Read the parameters this class declares from the parameter
-         * file.
+         * Read the parameters this class declares from the parameter file.
          */
         virtual
         void

Modified: trunk/aspect/include/aspect/boundary_temperature/interface.h
===================================================================
--- trunk/aspect/include/aspect/boundary_temperature/interface.h	2014-04-13 14:37:05 UTC (rev 2504)
+++ trunk/aspect/include/aspect/boundary_temperature/interface.h	2014-04-13 14:49:25 UTC (rev 2505)
@@ -58,25 +58,26 @@
         virtual ~Interface();
 
         /**
-         * Return the temperature that is to hold at a particular location on the
-         * boundary of the domain.
+         * Return the temperature that is to hold at a particular location on
+         * the boundary of the domain.
          *
-         * @param geometry_model The geometry model that describes the domain. This may
-         *   be used to determine whether the boundary temperature model is implemented
-         *   for this geometry.
-         * @param boundary_indicator The boundary indicator of the part of the boundary
-         *   of the domain on which the point is located at which we are requesting the
-         *   temperature.
-         * @param location The location of the point at which we ask for the temperature.
-         **/
+         * @param geometry_model The geometry model that describes the domain.
+         * This may be used to determine whether the boundary temperature
+         * model is implemented for this geometry.
+         * @param boundary_indicator The boundary indicator of the part of the
+         * boundary of the domain on which the point is located at which we
+         * are requesting the temperature.
+         * @param location The location of the point at which we ask for the
+         * temperature.
+         */
         virtual
         double temperature (const GeometryModel::Interface<dim> &geometry_model,
                             const unsigned int                   boundary_indicator,
                             const Point<dim>                    &location) const = 0;
 
         /**
-         * Return the minimal the temperature on that part of the boundary
-         * on which Dirichlet conditions are posed.
+         * Return the minimal the temperature on that part of the boundary on
+         * which Dirichlet conditions are posed.
          *
          * This value is used in computing dimensionless numbers such as the
          * Nusselt number indicating heat flux.
@@ -86,8 +87,8 @@
                                       std::set<types::boundary_id>()) const = 0;
 
         /**
-         * Return the maximal the temperature on that part of the boundary
-         * on which Dirichlet conditions are posed.
+         * Return the maximal the temperature on that part of the boundary on
+         * which Dirichlet conditions are posed.
          *
          * This value is used in computing dimensionless numbers such as the
          * Nusselt number indicating heat flux.
@@ -97,20 +98,20 @@
                                       std::set<types::boundary_id>()) const = 0;
 
         /**
-         * Declare the parameters this class takes through input files.
-         * The default implementation of this function does not describe
-         * any parameters. Consequently, derived classes do not have to
-         * overload this function if they do not take any runtime parameters.
+         * Declare the parameters this class takes through input files. The
+         * default implementation of this function does not describe any
+         * parameters. Consequently, derived classes do not have to overload
+         * this function if they do not take any runtime parameters.
          */
         static
         void
         declare_parameters (ParameterHandler &prm);
 
         /**
-         * Read the parameters this class declares from the parameter
-         * file. The default implementation of this function does not read
-         * any parameters. Consequently, derived classes do not have to
-         * overload this function if they do not take any runtime parameters.
+         * Read the parameters this class declares from the parameter file.
+         * The default implementation of this function does not read any
+         * parameters. Consequently, derived classes do not have to overload
+         * this function if they do not take any runtime parameters.
          */
         virtual
         void
@@ -119,16 +120,17 @@
 
 
     /**
-     * Register a boundary temperature model so that it can be selected from the parameter file.
+     * Register a boundary temperature model so that it can be selected from
+     * the parameter file.
      *
      * @param name A string that identifies the boundary temperature model
-     * @param description A text description of what this model
-     * does and that will be listed in the documentation of
-     * the parameter file.
-     * @param declare_parameters_function A pointer to a function that can be used to
-     *   declare the parameters that this geometry model wants to read from input files.
-     * @param factory_function A pointer to a function that can create an object of
-     *   this boundary temperature model.
+     * @param description A text description of what this model does and that
+     * will be listed in the documentation of the parameter file.
+     * @param declare_parameters_function A pointer to a function that can be
+     * used to declare the parameters that this geometry model wants to read
+     * from input files.
+     * @param factory_function A pointer to a function that can create an
+     * object of this boundary temperature model.
      *
      * @ingroup BoundaryTemperatures
      */
@@ -140,8 +142,9 @@
                                    Interface<dim> *(*factory_function) ());
 
     /**
-     * A function that given the name of a model returns a pointer to an object
-     * that describes it. Ownership of the pointer is transferred to the caller.
+     * A function that given the name of a model returns a pointer to an
+     * object that describes it. Ownership of the pointer is transferred to
+     * the caller.
      *
      * @ingroup BoundaryTemperatures
      */
@@ -151,7 +154,8 @@
 
 
     /**
-     * Declare the runtime parameters of the registered boundary temperature models.
+     * Declare the runtime parameters of the registered boundary temperature
+     * models.
      *
      * @ingroup BoundaryTemperatures
      */
@@ -161,8 +165,9 @@
 
 
     /**
-     * Given a class name, a name, and a description for the parameter file for a boundary temperature model, register it with
-     * the functions that can declare their parameters and create these objects.
+     * Given a class name, a name, and a description for the parameter file
+     * for a boundary temperature model, register it with the functions that
+     * can declare their parameters and create these objects.
      *
      * @ingroup BoundaryTemperatures
      */

Modified: trunk/aspect/include/aspect/boundary_temperature/spherical_constant.h
===================================================================
--- trunk/aspect/include/aspect/boundary_temperature/spherical_constant.h	2014-04-13 14:37:05 UTC (rev 2504)
+++ trunk/aspect/include/aspect/boundary_temperature/spherical_constant.h	2014-04-13 14:49:25 UTC (rev 2505)
@@ -31,10 +31,10 @@
   namespace BoundaryTemperature
   {
     /**
-     * A class that implements a temperature boundary condition for a spherical
-     * shell geometry in which the temperature at the inner and outer surfaces
-     * (i.e. at the core-mantle and the mantle-lithosphere/atmosphere boundaries)
-     * are constant.
+     * A class that implements a temperature boundary condition for a
+     * spherical shell geometry in which the temperature at the inner and
+     * outer surfaces (i.e. at the core-mantle and the mantle-
+     * lithosphere/atmosphere boundaries) are constant.
      *
      * @ingroup BoundaryTemperatures
      */
@@ -43,26 +43,28 @@
     {
       public:
         /**
-         * Return the temperature that is to hold at a particular location on the
-         * boundary of the domain. This function returns the constant temperatures
-         * read from the parameter file for the inner and outer boundaries.
+         * Return the temperature that is to hold at a particular location on
+         * the boundary of the domain. This function returns the constant
+         * temperatures read from the parameter file for the inner and outer
+         * boundaries.
          *
-         * @param geometry_model The geometry model that describes the domain. This may
-         *   be used to determine whether the boundary temperature model is implemented
-         *   for this geometry.
-         * @param boundary_indicator The boundary indicator of the part of the boundary
-         *   of the domain on which the point is located at which we are requesting the
-         *   temperature.
-         * @param location The location of the point at which we ask for the temperature.
-         **/
+         * @param geometry_model The geometry model that describes the domain.
+         * This may be used to determine whether the boundary temperature
+         * model is implemented for this geometry.
+         * @param boundary_indicator The boundary indicator of the part of the
+         * boundary of the domain on which the point is located at which we
+         * are requesting the temperature.
+         * @param location The location of the point at which we ask for the
+         * temperature.
+         */
         virtual
         double temperature (const GeometryModel::Interface<dim> &geometry_model,
                             const unsigned int                   boundary_indicator,
                             const Point<dim>                    &location) const;
 
         /**
-         * Return the minimal the temperature on that part of the boundary
-         * on which Dirichlet conditions are posed.
+         * Return the minimal the temperature on that part of the boundary on
+         * which Dirichlet conditions are posed.
          *
          * This value is used in computing dimensionless numbers such as the
          * Nusselt number indicating heat flux.
@@ -71,8 +73,8 @@
         double minimal_temperature (const std::set<types::boundary_id> &fixed_boundary_ids) const;
 
         /**
-         * Return the maximal the temperature on that part of the boundary
-         * on which Dirichlet conditions are posed.
+         * Return the maximal the temperature on that part of the boundary on
+         * which Dirichlet conditions are posed.
          *
          * This value is used in computing dimensionless numbers such as the
          * Nusselt number indicating heat flux.
@@ -81,16 +83,15 @@
         double maximal_temperature (const std::set<types::boundary_id> &fixed_boundary_ids) const;
 
         /**
-         * Declare the parameters this class takes through input files.
-         * This class declares the inner and outer boundary temperatures.
+         * Declare the parameters this class takes through input files. This
+         * class declares the inner and outer boundary temperatures.
          */
         static
         void
         declare_parameters (ParameterHandler &prm);
 
         /**
-         * Read the parameters this class declares from the parameter
-         * file.
+         * Read the parameters this class declares from the parameter file.
          */
         virtual
         void

Modified: trunk/aspect/include/aspect/boundary_temperature/tan_gurnis.h
===================================================================
--- trunk/aspect/include/aspect/boundary_temperature/tan_gurnis.h	2014-04-13 14:37:05 UTC (rev 2504)
+++ trunk/aspect/include/aspect/boundary_temperature/tan_gurnis.h	2014-04-13 14:49:25 UTC (rev 2505)
@@ -31,8 +31,8 @@
   namespace BoundaryTemperature
   {
     /**
-     * A class that implements a temperature boundary condition for the tan/gurnis benchmark
-     * in a box geometry.
+     * A class that implements a temperature boundary condition for the
+     * tan/gurnis benchmark in a box geometry.
      *
      * @ingroup BoundaryTemperatures
      */
@@ -41,26 +41,27 @@
     {
       public:
         /**
-         * Return the temperature that is to hold at a particular location on the
-         * boundary of the domain. This function returns constant temperatures
-         * at the left and right boundaries.
+         * Return the temperature that is to hold at a particular location on
+         * the boundary of the domain. This function returns constant
+         * temperatures at the left and right boundaries.
          *
-         * @param geometry_model The geometry model that describes the domain. This may
-         *   be used to determine whether the boundary temperature model is implemented


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