[cig-commits] [commit] devel: update instructions for default example based on file name changes (32f16f6)

[cig_noreply at geodynamics.org]

Repository : https://github.com/geodynamics/specfem3d

On branch  : devel
Link       : https://github.com/geodynamics/specfem3d/compare/59a44850c9a4c90d73857be99243e41f71ff6da1...32f16f61442c627bc16041ad365c479f92d4979c

>---------------------------------------------------------------

commit 32f16f61442c627bc16041ad365c479f92d4979c
Author: Carl Tape <carltape at gmail.com>
Date:   Tue Aug 12 10:21:21 2014 -0800

    update instructions for default example based on file name changes


>---------------------------------------------------------------

32f16f61442c627bc16041ad365c479f92d4979c
 .../README                                             | 18 ++++++++++--------
 .../REF_SEIS/plot_these_seismograms_with_gnuplot.gnu   |  2 +-
 utils/Cluster/pbs/go_decomposer_pbs.bash               |  2 +-
 3 files changed, 12 insertions(+), 10 deletions(-)

diff --git a/EXAMPLES/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/README b/EXAMPLES/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/README
index 4ab175a..9cbf7c7 100644
--- a/EXAMPLES/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/README
+++ b/EXAMPLES/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/README
@@ -71,10 +71,12 @@ step-by-step tutorial (long version -- generate MESH with GEOCUBIT):
 
 4. copy three input files from examples directory into SPECFEM3D/DATA/
 
-     > cd examples/homogeneous_halfspace/DATA/
+     > cd EXAMPLES/homogeneous_halfspace/DATA/
      > cp * ../../../DATA/
      > cd ..
 
+     note: this may not be needed if the files are already symbolically linked
+
 5. create mesh:
 
    - check path, then make mesh
@@ -122,7 +124,7 @@ step-by-step tutorial (long version -- generate MESH with GEOCUBIT):
      note 2: for small jobs (like this one), you can simply launch the job on
              the local node from directory SPECFEM3D:
 
-     > ./bin/xdecompose_mesh 4 examples/homogeneous_halfspace/MESH/ OUTPUT_FILES/DATABASES_MPI/
+     > ./bin/xdecompose_mesh 4 EXAMPLES/homogeneous_halfspace/MESH/ OUTPUT_FILES/DATABASES_MPI/
 
 7. generate databases:
 
@@ -160,25 +162,25 @@ step-by-step tutorial (long version -- generate MESH with GEOCUBIT):
      as well as 51 timestamp****** files
 
 9. check with 6 reference seismograms in
-      SPECFEM3D/examples/homogeneous_halfspace/REF_SEIS/
+      SPECFEM3D/EXAMPLES/homogeneous_halfspace/REF_SEIS/
 
    - option 1: from SPECFEM3D/, quick viewing using xmgrace (if available):
 
-     > xmgrace examples/homogeneous_halfspace/REF_SEIS/*Z.semd &
+     > xmgrace EXAMPLES/homogeneous_halfspace/REF_SEIS/*Z.semd &
      > xmgrace OUTPUT_FILES/*Z.semd &
 
    - option 2: generate ps files using gnuplot:
 
-     > cd SPECFEM3D/examples/homogeneous_halfspace/REF_SEIS
+     > cd SPECFEM3D/EXAMPLES/homogeneous_halfspace/REF_SEIS
      > gnuplot
 
-         gnuplot> load "X1-50.BXZ.gnuplot"
+         gnuplot> load "plot_these_seismograms_with_gnuplot.gnu"
 
      You should see a figure in a render window.
      Writing the figure to a file may depend on your gnuplot settings.
      One example to generate a postscript is shown below:
 
-         gnuplot> load "X1-50.BXZ.gnuplot"
+         gnuplot> load "plot_these_seismograms_with_gnuplot.gnu"
          gnuplot> set term postscript color solid
          Terminal type set to 'postscript'
          Options are 'landscape noenhanced color colortext \
@@ -189,7 +191,7 @@ step-by-step tutorial (long version -- generate MESH with GEOCUBIT):
          gnuplot> replot
          gnuplot> quit
 
-     - copy gnuplot script X1-50.BXZ.gnuplot to OUTPUT_FILES/
+     - copy gnuplot script plot_these_seismograms_with_gnuplot.gnu to OUTPUT_FILES/
      - execute same commands as above
      - you should see the same image as generated from the reference seismograms
 
diff --git a/EXAMPLES/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/REF_SEIS/plot_these_seismograms_with_gnuplot.gnu b/EXAMPLES/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/REF_SEIS/plot_these_seismograms_with_gnuplot.gnu
index d474340..7caf0c6 100644
--- a/EXAMPLES/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/REF_SEIS/plot_these_seismograms_with_gnuplot.gnu
+++ b/EXAMPLES/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/REF_SEIS/plot_these_seismograms_with_gnuplot.gnu
@@ -5,6 +5,6 @@
 set xlabel "time (s)"
 set ylabel "displacement (m)"
 
-plot 'X1.DB.BXZ.semd' w l,'X10.DB.BXZ.semd' w l,'X20.DB.BXZ.semd' w l,'X30.DB.BXZ.semd' w l,'X40.DB.BXZ.semd' w l,'X50.DB.BXZ.semd' w l
+plot 'X20.DB.BXZ.semd' w l,'X30.DB.BXZ.semd' w l,'X40.DB.BXZ.semd' w l,'X50.DB.BXZ.semd' w l
 pause -1 "Hit key..."
 
diff --git a/utils/Cluster/pbs/go_decomposer_pbs.bash b/utils/Cluster/pbs/go_decomposer_pbs.bash
index 5b52cc3..78f93be 100755
--- a/utils/Cluster/pbs/go_decomposer_pbs.bash
+++ b/utils/Cluster/pbs/go_decomposer_pbs.bash
@@ -38,7 +38,7 @@ mkdir -p OUTPUT_FILES/
 cp go_decomposer_pbs.bash OUTPUT_FILES/
 
 # USER CHANGE MESH DIRECTORY
-MESHDIR=./examples/homogeneous_halfspace/MESH
+MESHDIR=./EXAMPLES/homogeneous_halfspace/MESH
 
 mkdir -p $LOCALPATH
 ./bin/xdecompose_mesh $NPROC $MESHDIR/ $LOCALPATH/