[cig-commits] [commit] devel, master: renamed process.sh to run_this_example.sh and updated README_EXAMPLES (6622907)
cig_noreply at geodynamics.org
cig_noreply at geodynamics.org
Wed Jun 18 15:23:57 PDT 2014
Repository : https://github.com/geodynamics/specfem2d
On branches: devel,master
Link : https://github.com/geodynamics/specfem2d/compare/fc67e6fd7ad890705b2b72b4b3c509accb22249e...e9ca46c40131588d89d7b0883250bc6584ce6b4c
>---------------------------------------------------------------
commit 6622907d1a32861513e576d55346ae90d542387a
Author: Dimitri Komatitsch <komatitsch at lma.cnrs-mrs.fr>
Date: Tue Mar 18 01:56:31 2014 +0100
renamed process.sh to run_this_example.sh and updated README_EXAMPLES
>---------------------------------------------------------------
6622907d1a32861513e576d55346ae90d542387a
.../{process.sh => run_this_example.sh} | 0
README_EXAMPLES | 23 ++++-----------------
.../{process.sh => run_this_example.sh} | 0
.../{process.sh => run_this_example.sh} | 0
Tape2007/{process.sh => run_this_example.sh} | 0
.../{process.sh => run_this_example.sh} | 0
Tromp2005/{process.sh => run_this_example.sh} | 0
.../{process.sh => run_this_example.sh} | 0
...RE_IS_THE_REASON_WHY_THIS_EXAMPLE_IS_BROKEN.txt | 0
.../INDUSTRIAL_FORMAT/Par_file | 0
.../INDUSTRIAL_FORMAT/README | 0
.../INDUSTRIAL_FORMAT/SEG_2D_SALT/vp.H | 0
.../INDUSTRIAL_FORMAT/SEG_2D_SALT/vp.bin | Bin
.../INDUSTRIAL_FORMAT/SOURCE | 0
.../INDUSTRIAL_FORMAT/constants.h | 0
.../INDUSTRIAL_FORMAT/interpolate.bash | 0
.../INDUSTRIAL_FORMAT/interpolate.f90 | 0
.../INDUSTRIAL_FORMAT/run.bash | 0
...RE_IS_THE_REASON_WHY_THIS_EXAMPLE_IS_BROKEN.txt | 0
.../noise_layered/adj_mask.f90 | 0
.../noise_layered/changemask | 0
.../noise_layered/changerec | 0
.../noise_layered/clean | 0
.../noise_layered/getdirect | 0
.../noise_layered/masks/drillbit | 0
.../noise_layered/masks/uniform | 0
.../noise_layered/model_0/Par_file_fair | 0
.../noise_layered/model_0/Par_file_good | 0
.../noise_layered/model_0/SOURCE_noise | 0
.../noise_layered/model_0/interfaces_fair | 0
.../noise_layered/model_0/interfaces_good | 0
.../noise_layered/model_1/Par_file_best | 0
.../noise_layered/model_1/Par_file_fair | 0
.../noise_layered/model_1/Par_file_good | 0
.../noise_layered/model_1/SOURCE_noise | 0
.../noise_layered/model_1/interfaces_best | 0
.../noise_layered/model_1/interfaces_fair | 0
.../noise_layered/model_1/interfaces_good | 0
.../noise_layered/model_2/Par_file_fair | 0
.../noise_layered/model_2/Par_file_good | 0
.../noise_layered/model_2/SOURCE_noise | 0
.../noise_layered/model_2/interfaces_fair | 0
.../noise_layered/model_2/interfaces_good | 0
.../noise_layered/replicate | 0
.../noise_layered/run_adj | 0
.../noise_layered/run_all | 0
.../noise_layered/run_fwd | 0
...RE_IS_THE_REASON_WHY_THIS_EXAMPLE_IS_BROKEN.txt | 0
.../noise_uniform/Par_file_noise_1 | 0
.../noise_uniform/Par_file_noise_2 | 0
.../noise_uniform/Par_file_noise_3 | 0
.../noise_uniform/SOURCE_noise | 0
.../noise_uniform/STATIONS_noise | 0
.../noise_uniform/adj_cc.f90 | 0
.../noise_uniform/changemask | 0
.../noise_uniform/clean | 0
.../noise_uniform/masks/nonuniform | 0
.../noise_uniform/masks/uniform | 0
.../noise_uniform/replicate | 0
.../noise_uniform/run_this_example.sh | 0
.../noise_uniform/uniform.dat | 0
.../noise_uniform/use_negative_branch | 0
.../noise_uniform/use_positive_branch | 0
.../Par_file_no_canyon | 0
.../SOURCE_no_canyon | 0
.../interf_paco.dat | 0
.../interface_sinus.dat | 0
.../interfaces_no_canyon.dat | 0
.../unused_older_examples_DATA_to_sort/profilx.dat | 0
.../unused_older_examples_DATA_to_sort/profily.dat | 0
.../topoarticle.dat | 0
.../{process.sh => run_this_example.sh} | 0
attenuation/{process.sh => run_this_example.sh} | 0
canyon/{process.sh => run_this_example.sh} | 0
...RE_IS_THE_REASON_WHY_THIS_EXAMPLE_IS_BROKEN.txt | 3 ---
.../BENCHMARK_CLAERBOUT_ADJOINT/README | 11 ----------
.../{process.sh => run_this_example.sh} | 0
.../{process.sh => run_this_example.sh} | 0
.../{process.sh => run_this_example.sh} | 0
.../{process.sh => run_this_example.sh} | 0
.../{process.sh => run_this_example.sh} | 0
.../{process.sh => run_this_example.sh} | 0
.../{process.sh => run_this_example.sh} | 0
.../{process.sh => run_this_example.sh} | 0
.../{process.sh => run_this_example.sh} | 0
.../{process.sh => run_this_example.sh} | 0
.../{Par_file_M2_UPPA => Par_file_simple_topo} | 4 ++--
.../README | 2 +-
.../{SOURCE_M2_UPPA => SOURCE_simple_topo} | 0
...urved.dat => interfaces_simple_topo_curved.dat} | 0
...PA_flat.dat => interfaces_simple_topo_flat.dat} | 0
.../{process.sh => run_this_example.sh} | 4 ++--
.../Par_file_Abel_Balanche_bathy_source_solid | 0
.../SOURCE_Abel_Balanche_bathy_source_solid | 0
.../interfaces_Abel_Brest_bathymetry.dat | 0
.../process.sh => thermocline/run_this_example.sh | 0
96 files changed, 9 insertions(+), 38 deletions(-)
diff --git a/LuoYang_fluid_solid_kernel/process.sh b/LuoYang_fluid_solid_kernel/run_this_example.sh
similarity index 100%
rename from LuoYang_fluid_solid_kernel/process.sh
rename to LuoYang_fluid_solid_kernel/run_this_example.sh
diff --git a/README_EXAMPLES b/README_EXAMPLES
index 2a1eef4..75fcef6 100644
--- a/README_EXAMPLES
+++ b/README_EXAMPLES
@@ -2,28 +2,13 @@
README
----------------------------------------------------------------------
-SPECFEM2D/EXAMPLES/README_EXAMPLES
-
This directory contains a set of examples for testing purposes.
-1. M2_UPPA -- internal mesh with smooth topographic interfaces
-2. fluid_solid -- external mesh, fluid, solid, and topography
-3. Tromp2005 -- internal mesh, from Tromp, Tape, Liu (GJI 2005)
-4. Tape2007 -- internal mesh, from Tape, Liu, Tromp (GJI 2007)
-
Each example requires a Par_file, SOURCE, and either a file of interfaces
-OR an external mesh. The parameter files Par_file are written such that
-the examples can be run in the current example directory, using the
-processing script: ./process.sh
+OR an external mesh. The examples can be run in the current example directory, using the
+processing script:
-The default example is M2_UPPA. To setup a different example in the
-main directory SPECFEM2D/, you must over-write the DATA/SOURCE and DATA/Par_file.
-For example:
-cp EXAMPLES/fluid_solid/Par_file_fluid_soild DATA/Par_file
-cp EXAMPLES/fluid_solid/SOURCE_fluid_solid DATA/SOURCE
-cp -r EXAMPLES/fluid_solid/mesh ./
+./run_this_example.sh
-The directory DATA_to_sort contains additional examples that have yet
-to be sorted into folders as formal examples.
+The default example is simple_topography_and_also_a_simple_fluid_layer.
---
diff --git a/Rayleigh_wave_no_crack/process.sh b/Rayleigh_wave_no_crack/run_this_example.sh
similarity index 100%
rename from Rayleigh_wave_no_crack/process.sh
rename to Rayleigh_wave_no_crack/run_this_example.sh
diff --git a/Rayleigh_wave_with_crack/process.sh b/Rayleigh_wave_with_crack/run_this_example.sh
similarity index 100%
rename from Rayleigh_wave_with_crack/process.sh
rename to Rayleigh_wave_with_crack/run_this_example.sh
diff --git a/Tape2007/process.sh b/Tape2007/run_this_example.sh
similarity index 100%
rename from Tape2007/process.sh
rename to Tape2007/run_this_example.sh
diff --git a/Tape2007_kernel/process.sh b/Tape2007_kernel/run_this_example.sh
similarity index 100%
rename from Tape2007_kernel/process.sh
rename to Tape2007_kernel/run_this_example.sh
diff --git a/Tromp2005/process.sh b/Tromp2005/run_this_example.sh
similarity index 100%
rename from Tromp2005/process.sh
rename to Tromp2005/run_this_example.sh
diff --git a/Tromp2005_kernel/process.sh b/Tromp2005_kernel/run_this_example.sh
similarity index 100%
rename from Tromp2005_kernel/process.sh
rename to Tromp2005_kernel/run_this_example.sh
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/HERE_IS_THE_REASON_WHY_THIS_EXAMPLE_IS_BROKEN.txt b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/HERE_IS_THE_REASON_WHY_THIS_EXAMPLE_IS_BROKEN.txt
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/HERE_IS_THE_REASON_WHY_THIS_EXAMPLE_IS_BROKEN.txt
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/HERE_IS_THE_REASON_WHY_THIS_EXAMPLE_IS_BROKEN.txt
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/Par_file b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/Par_file
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/Par_file
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/Par_file
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/README b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/README
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/README
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/README
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/SEG_2D_SALT/vp.H b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/SEG_2D_SALT/vp.H
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rename from currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/SEG_2D_SALT/vp.H
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/SEG_2D_SALT/vp.H
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/SEG_2D_SALT/vp.bin b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/SEG_2D_SALT/vp.bin
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/SEG_2D_SALT/vp.bin
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/SEG_2D_SALT/vp.bin
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/SOURCE b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/SOURCE
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/SOURCE
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/SOURCE
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/constants.h b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/constants.h
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rename from currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/constants.h
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/constants.h
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/interpolate.bash b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/interpolate.bash
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rename from currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/interpolate.bash
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/interpolate.bash
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/interpolate.f90 b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/interpolate.f90
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rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/interpolate.f90
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/run.bash b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/INDUSTRIAL_FORMAT/run.bash
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/HERE_IS_THE_REASON_WHY_THIS_EXAMPLE_IS_BROKEN.txt b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/HERE_IS_THE_REASON_WHY_THIS_EXAMPLE_IS_BROKEN.txt
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/adj_mask.f90 b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/adj_mask.f90
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rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/adj_mask.f90
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/changemask b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/changemask
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rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/changemask
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/changerec b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/changerec
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/clean b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/clean
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/getdirect b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/getdirect
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/masks/drillbit b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/masks/drillbit
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/masks/uniform b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/masks/uniform
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/model_0/Par_file_fair b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/model_0/Par_file_fair
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/model_0/Par_file_good b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/model_0/Par_file_good
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/model_0/SOURCE_noise b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/model_0/SOURCE_noise
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/model_0/interfaces_fair b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/model_0/interfaces_fair
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/model_0/interfaces_good b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/model_0/interfaces_good
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/model_1/Par_file_best b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/model_1/Par_file_best
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/model_1/SOURCE_noise b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/model_1/SOURCE_noise
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/model_1/interfaces_best b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/model_1/interfaces_best
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/model_2/SOURCE_noise b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/model_2/SOURCE_noise
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/model_2/interfaces_fair b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/model_2/interfaces_fair
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/replicate b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/replicate
similarity index 100%
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/run_adj b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/run_adj
similarity index 100%
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/run_all b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_layered/run_all
similarity index 100%
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similarity index 100%
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/HERE_IS_THE_REASON_WHY_THIS_EXAMPLE_IS_BROKEN.txt b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/HERE_IS_THE_REASON_WHY_THIS_EXAMPLE_IS_BROKEN.txt
similarity index 100%
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/Par_file_noise_1 b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/Par_file_noise_1
similarity index 100%
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/Par_file_noise_2 b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/Par_file_noise_2
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/Par_file_noise_2
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/Par_file_noise_2
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/Par_file_noise_3 b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/Par_file_noise_3
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/Par_file_noise_3
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/Par_file_noise_3
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/SOURCE_noise b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/SOURCE_noise
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/SOURCE_noise
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/STATIONS_noise b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/STATIONS_noise
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/STATIONS_noise
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/STATIONS_noise
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/adj_cc.f90 b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/adj_cc.f90
similarity index 100%
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/changemask b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/changemask
similarity index 100%
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/clean b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/clean
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/clean
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/masks/nonuniform b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/masks/nonuniform
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/masks/nonuniform
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/masks/uniform b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/masks/uniform
similarity index 100%
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/replicate b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/replicate
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/replicate
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/replicate
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/process.sh b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/run_this_example.sh
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/process.sh
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/run_this_example.sh
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/uniform.dat b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/uniform.dat
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/uniform.dat
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diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/use_negative_branch b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/use_negative_branch
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/use_negative_branch
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/use_negative_branch
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/use_positive_branch b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/use_positive_branch
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/use_positive_branch
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/noise_uniform/use_positive_branch
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/Par_file_no_canyon b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/Par_file_no_canyon
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/Par_file_no_canyon
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/Par_file_no_canyon
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/SOURCE_no_canyon b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/SOURCE_no_canyon
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/SOURCE_no_canyon
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/SOURCE_no_canyon
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/interf_paco.dat b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/interf_paco.dat
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/interf_paco.dat
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/interf_paco.dat
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/interface_sinus.dat b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/interface_sinus.dat
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/interface_sinus.dat
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/interface_sinus.dat
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/interfaces_no_canyon.dat b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/interfaces_no_canyon.dat
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/interfaces_no_canyon.dat
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/interfaces_no_canyon.dat
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/profilx.dat b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/profilx.dat
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/profilx.dat
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/profilx.dat
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/profily.dat b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/profily.dat
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/profily.dat
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/profily.dat
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/topoarticle.dat b/ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/topoarticle.dat
similarity index 100%
rename from currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/topoarticle.dat
rename to ZZZ_currently_broken_or_obsolete_examples_but_do_not_remove/unused_older_examples_DATA_to_sort/topoarticle.dat
diff --git a/acoustic_poroelastic/process.sh b/acoustic_poroelastic/run_this_example.sh
similarity index 100%
rename from acoustic_poroelastic/process.sh
rename to acoustic_poroelastic/run_this_example.sh
diff --git a/attenuation/process.sh b/attenuation/run_this_example.sh
similarity index 100%
rename from attenuation/process.sh
rename to attenuation/run_this_example.sh
diff --git a/canyon/process.sh b/canyon/run_this_example.sh
similarity index 100%
rename from canyon/process.sh
rename to canyon/run_this_example.sh
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/BENCHMARK_CLAERBOUT_ADJOINT/HERE_IS_THE_REASON_WHY_THIS_EXAMPLE_IS_BROKEN.txt b/currently_broken_or_obsolete_examples_but_do_not_remove/BENCHMARK_CLAERBOUT_ADJOINT/HERE_IS_THE_REASON_WHY_THIS_EXAMPLE_IS_BROKEN.txt
deleted file mode 100644
index 055d970..0000000
--- a/currently_broken_or_obsolete_examples_but_do_not_remove/BENCHMARK_CLAERBOUT_ADJOINT/HERE_IS_THE_REASON_WHY_THIS_EXAMPLE_IS_BROKEN.txt
+++ /dev/null
@@ -1,3 +0,0 @@
-
-* `BENCHMARK_CLAERBOUT_ADJOINT`: All the examples in this directory copy old versions of some files into the source and recompile. Needless to say, this doesn't work.
-
diff --git a/currently_broken_or_obsolete_examples_but_do_not_remove/BENCHMARK_CLAERBOUT_ADJOINT/README b/currently_broken_or_obsolete_examples_but_do_not_remove/BENCHMARK_CLAERBOUT_ADJOINT/README
deleted file mode 100644
index bef9347..0000000
--- a/currently_broken_or_obsolete_examples_but_do_not_remove/BENCHMARK_CLAERBOUT_ADJOINT/README
+++ /dev/null
@@ -1,11 +0,0 @@
-uncompress the tar ball:
- tar xzvf DATAs.tar.gz
-
-then you will have four folders, namely:
- DATA_ADJOINT_AC-EL-COUPLED
- DATA_ADJOINT_ACOUSTIC
- DATA_ADJOINT_EL-AC-COUPLED
- DATA_ADJOINT_ELASTIC
-
-in each of the four directories, a README file is provided.
-you can follow the instruction in README and run the adjoint tests.
diff --git a/fluid_solid/fluid_solid_external_mesh/process.sh b/fluid_solid/fluid_solid_external_mesh/run_this_example.sh
similarity index 100%
rename from fluid_solid/fluid_solid_external_mesh/process.sh
rename to fluid_solid/fluid_solid_external_mesh/run_this_example.sh
diff --git a/fluid_solid/from_2000_Geophysics_paper_flat_ocean_bottom/process.sh b/fluid_solid/from_2000_Geophysics_paper_flat_ocean_bottom/run_this_example.sh
similarity index 100%
rename from fluid_solid/from_2000_Geophysics_paper_flat_ocean_bottom/process.sh
rename to fluid_solid/from_2000_Geophysics_paper_flat_ocean_bottom/run_this_example.sh
diff --git a/fluid_solid/from_2000_Geophysics_paper_sinusoidal_ocean_bottom/process.sh b/fluid_solid/from_2000_Geophysics_paper_sinusoidal_ocean_bottom/run_this_example.sh
similarity index 100%
rename from fluid_solid/from_2000_Geophysics_paper_sinusoidal_ocean_bottom/process.sh
rename to fluid_solid/from_2000_Geophysics_paper_sinusoidal_ocean_bottom/run_this_example.sh
diff --git a/initial_plane_wave/process.sh b/initial_plane_wave/run_this_example.sh
similarity index 100%
rename from initial_plane_wave/process.sh
rename to initial_plane_wave/run_this_example.sh
diff --git a/salt_dome_CUBIT_mesh/CPML_homogeneous/process.sh b/salt_dome_CUBIT_mesh/CPML_homogeneous/run_this_example.sh
similarity index 100%
rename from salt_dome_CUBIT_mesh/CPML_homogeneous/process.sh
rename to salt_dome_CUBIT_mesh/CPML_homogeneous/run_this_example.sh
diff --git a/salt_dome_CUBIT_mesh/CPML_normal_fluid_solid/process.sh b/salt_dome_CUBIT_mesh/CPML_normal_fluid_solid/run_this_example.sh
similarity index 100%
rename from salt_dome_CUBIT_mesh/CPML_normal_fluid_solid/process.sh
rename to salt_dome_CUBIT_mesh/CPML_normal_fluid_solid/run_this_example.sh
diff --git a/salt_dome_CUBIT_mesh/CPML_normal_solid_only/process.sh b/salt_dome_CUBIT_mesh/CPML_normal_solid_only/run_this_example.sh
similarity index 100%
rename from salt_dome_CUBIT_mesh/CPML_normal_solid_only/process.sh
rename to salt_dome_CUBIT_mesh/CPML_normal_solid_only/run_this_example.sh
diff --git a/salt_dome_CUBIT_mesh/Stacey_homogeneous/process.sh b/salt_dome_CUBIT_mesh/Stacey_homogeneous/run_this_example.sh
similarity index 100%
rename from salt_dome_CUBIT_mesh/Stacey_homogeneous/process.sh
rename to salt_dome_CUBIT_mesh/Stacey_homogeneous/run_this_example.sh
diff --git a/salt_dome_CUBIT_mesh/Stacey_normal_fluid_solid/process.sh b/salt_dome_CUBIT_mesh/Stacey_normal_fluid_solid/run_this_example.sh
similarity index 100%
rename from salt_dome_CUBIT_mesh/Stacey_normal_fluid_solid/process.sh
rename to salt_dome_CUBIT_mesh/Stacey_normal_fluid_solid/run_this_example.sh
diff --git a/semi_infinite_homo/process.sh b/semi_infinite_homo/run_this_example.sh
similarity index 100%
rename from semi_infinite_homo/process.sh
rename to semi_infinite_homo/run_this_example.sh
diff --git a/simple_topography_and_also_a_simple_fluid_layer/Par_file_M2_UPPA b/simple_topography_and_also_a_simple_fluid_layer/Par_file_simple_topo
similarity index 98%
rename from simple_topography_and_also_a_simple_fluid_layer/Par_file_M2_UPPA
rename to simple_topography_and_also_a_simple_fluid_layer/Par_file_simple_topo
index 8607366..0df5371 100644
--- a/simple_topography_and_also_a_simple_fluid_layer/Par_file_M2_UPPA
+++ b/simple_topography_and_also_a_simple_fluid_layer/Par_file_simple_topo
@@ -1,5 +1,5 @@
# title of job
-title = Test for M2 UPPA
+title = Test for simple topography
# forward or adjoint simulation
SIMULATION_TYPE = 1 # 1 = forward, 3 = adjoint + kernels
@@ -144,7 +144,7 @@ tangential_detection_curve_file = ./DATA/courbe_eros_nodes # file containing the
# PARAMETERS FOR INTERNAL MESHING
# file containing interfaces for internal mesh
-interfacesfile = ../interfaces_M2_UPPA_curved.dat
+interfacesfile = ../interfaces_simple_topo_curved.dat
# geometry of the model (origin lower-left corner = 0,0) and mesh description
xmin = 0.d0 # abscissa of left side of the model
diff --git a/simple_topography_and_also_a_simple_fluid_layer/README b/simple_topography_and_also_a_simple_fluid_layer/README
index 9b5b590..2af0f98 100644
--- a/simple_topography_and_also_a_simple_fluid_layer/README
+++ b/simple_topography_and_also_a_simple_fluid_layer/README
@@ -14,7 +14,7 @@ TO RUN:
2. compile:
make all
-3. cd EXAMPLES/M2_UPPA/
+3. cd EXAMPLES/simple_topography_and_also_a_simple_fluid_layer
4. execute script to run mesher and solver for the PSV case:
./process.sh
diff --git a/simple_topography_and_also_a_simple_fluid_layer/SOURCE_M2_UPPA b/simple_topography_and_also_a_simple_fluid_layer/SOURCE_simple_topo
similarity index 100%
rename from simple_topography_and_also_a_simple_fluid_layer/SOURCE_M2_UPPA
rename to simple_topography_and_also_a_simple_fluid_layer/SOURCE_simple_topo
diff --git a/simple_topography_and_also_a_simple_fluid_layer/interfaces_M2_UPPA_curved.dat b/simple_topography_and_also_a_simple_fluid_layer/interfaces_simple_topo_curved.dat
similarity index 100%
rename from simple_topography_and_also_a_simple_fluid_layer/interfaces_M2_UPPA_curved.dat
rename to simple_topography_and_also_a_simple_fluid_layer/interfaces_simple_topo_curved.dat
diff --git a/simple_topography_and_also_a_simple_fluid_layer/interfaces_M2_UPPA_flat.dat b/simple_topography_and_also_a_simple_fluid_layer/interfaces_simple_topo_flat.dat
similarity index 100%
rename from simple_topography_and_also_a_simple_fluid_layer/interfaces_M2_UPPA_flat.dat
rename to simple_topography_and_also_a_simple_fluid_layer/interfaces_simple_topo_flat.dat
diff --git a/simple_topography_and_also_a_simple_fluid_layer/process.sh b/simple_topography_and_also_a_simple_fluid_layer/run_this_example.sh
similarity index 93%
rename from simple_topography_and_also_a_simple_fluid_layer/process.sh
rename to simple_topography_and_also_a_simple_fluid_layer/run_this_example.sh
index 03b59c8..b91a1ed 100755
--- a/simple_topography_and_also_a_simple_fluid_layer/process.sh
+++ b/simple_topography_and_also_a_simple_fluid_layer/run_this_example.sh
@@ -21,8 +21,8 @@ mkdir -p DATA
# sets up local DATA/ directory
cd DATA/
-cp ../Par_file_M2_UPPA Par_file
-cp ../SOURCE_M2_UPPA SOURCE
+cp ../Par_file_simple_topo Par_file
+cp ../SOURCE_simple_topo SOURCE
cd ../
# cleans output files
diff --git a/Abel_Brest/Par_file_Abel_Balanche_bathy_source_solid b/thermocline/Par_file_Abel_Balanche_bathy_source_solid
similarity index 100%
rename from Abel_Brest/Par_file_Abel_Balanche_bathy_source_solid
rename to thermocline/Par_file_Abel_Balanche_bathy_source_solid
diff --git a/Abel_Brest/SOURCE_Abel_Balanche_bathy_source_solid b/thermocline/SOURCE_Abel_Balanche_bathy_source_solid
similarity index 100%
rename from Abel_Brest/SOURCE_Abel_Balanche_bathy_source_solid
rename to thermocline/SOURCE_Abel_Balanche_bathy_source_solid
diff --git a/Abel_Brest/interfaces_Abel_Brest_bathymetry.dat b/thermocline/interfaces_Abel_Brest_bathymetry.dat
similarity index 100%
rename from Abel_Brest/interfaces_Abel_Brest_bathymetry.dat
rename to thermocline/interfaces_Abel_Brest_bathymetry.dat
diff --git a/Abel_Brest/process.sh b/thermocline/run_this_example.sh
similarity index 100%
rename from Abel_Brest/process.sh
rename to thermocline/run_this_example.sh
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