[cig-commits] [commit] devel: Merge branch 'master' into devel (bf10ec8)
cig_noreply at geodynamics.org
cig_noreply at geodynamics.org
Wed Jun 18 15:24:48 PDT 2014
Repository : https://github.com/geodynamics/specfem2d
On branch : devel
Link : https://github.com/geodynamics/specfem2d/compare/fc67e6fd7ad890705b2b72b4b3c509accb22249e...e9ca46c40131588d89d7b0883250bc6584ce6b4c
>---------------------------------------------------------------
commit bf10ec8a4019415a202fe961968c6cd2fb5759ea
Merge: f1cad83 e9ca46c
Author: CIG Backend <emheien at ucdavis.edu>
Date: Wed Jun 18 05:47:15 2014 +0000
Merge branch 'master' into devel
>---------------------------------------------------------------
bf10ec8a4019415a202fe961968c6cd2fb5759ea
EXAMPLES/Gmsh_example_Stacey_MPI/Material_SqrCirc | 2942 ++
EXAMPLES/Gmsh_example_Stacey_MPI/Mesh_SqrCirc | 2943 ++
EXAMPLES/Gmsh_example_Stacey_MPI/Nodes_SqrCirc | 11962 ++++++
.../Par_file_Gmsh_SqrCircles.in | 181 +
EXAMPLES/Gmsh_example_Stacey_MPI/SOURCE.SqrCirc | 13 +
EXAMPLES/Gmsh_example_Stacey_MPI/SqrCirc.geo | 47 +
EXAMPLES/Gmsh_example_Stacey_MPI/SqrCirc.msh | 15113 +++++++
EXAMPLES/Gmsh_example_Stacey_MPI/Surf_abs_SqrCirc | 145 +
EXAMPLES/Gmsh_example_Stacey_MPI/Surf_free_SqrCirc | 49 +
.../mesh_quality_histogram.txt | 20 +
.../plot_mesh_quality_histogram.gnu | 11 +
.../process_the_Gmsh_file_once_and_for_all.sh | 7 +
.../Gmsh_example_Stacey_MPI/run_this_example.sh | 66 +
.../Gmsh_example_Stacey_serial/Material_SqrCirc | 2942 ++
EXAMPLES/Gmsh_example_Stacey_serial/Mesh_SqrCirc | 2943 ++
EXAMPLES/Gmsh_example_Stacey_serial/Nodes_SqrCirc | 11962 ++++++
.../Par_file_Gmsh_SqrCircles.in | 181 +
EXAMPLES/Gmsh_example_Stacey_serial/SOURCE.SqrCirc | 13 +
EXAMPLES/Gmsh_example_Stacey_serial/SqrCirc.geo | 47 +
EXAMPLES/Gmsh_example_Stacey_serial/SqrCirc.msh | 15113 +++++++
.../Gmsh_example_Stacey_serial/Surf_abs_SqrCirc | 145 +
.../Gmsh_example_Stacey_serial/Surf_free_SqrCirc | 49 +
.../mesh_quality_histogram.txt | 20 +
.../plot_mesh_quality_histogram.gnu | 11 +
.../process_the_Gmsh_file_once_and_for_all.sh | 7 +
.../Gmsh_example_Stacey_serial/run_this_example.sh | 66 +
EXAMPLES/LuoYang_fluid_solid_kernel/Par_file | 183 +
EXAMPLES/LuoYang_fluid_solid_kernel/README | 32 +
EXAMPLES/LuoYang_fluid_solid_kernel/SOURCE | 17 +
EXAMPLES/LuoYang_fluid_solid_kernel/adj_source.f90 | 25 +
EXAMPLES/LuoYang_fluid_solid_kernel/interfaces.dat | 46 +
EXAMPLES/LuoYang_fluid_solid_kernel/plot_kernel | 41 +
.../LuoYang_fluid_solid_kernel/process_kernel.sh | 24 +
.../rho_kappa kernel.png | Bin 0 -> 25806 bytes
.../LuoYang_fluid_solid_kernel/run_this_example.sh | 66 +
EXAMPLES/README_EXAMPLES | 14 +
.../Rayleigh_wave_no_crack/Par_file_Rayleigh_2D | 171 +
EXAMPLES/Rayleigh_wave_no_crack/README | 29 +
EXAMPLES/Rayleigh_wave_no_crack/SOURCE_Rayleigh_2D | 13 +
.../interfaces_Rayleigh_flat.dat | 26 +
.../Rayleigh_wave_no_crack/run_this_example.sh | 65 +
.../Rayleigh_wave_with_crack/Par_file_Rayleigh_2D | 177 +
EXAMPLES/Rayleigh_wave_with_crack/README | 36 +
...quires_changing_one_line_in_the_source_code.txt | 11 +
.../Rayleigh_wave_with_crack/SOURCE_Rayleigh_2D | 13 +
.../interfaces_Rayleigh_flat.dat | 26 +
.../Rayleigh_wave_with_crack/run_this_example.sh | 65 +
EXAMPLES/Tape2007/Par_file_Tape2007_132rec_checker | 957 +
EXAMPLES/Tape2007/Par_file_Tape2007_onerec | 172 +
EXAMPLES/Tape2007/README | 45 +
EXAMPLES/Tape2007/SOURCE_001 | 13 +
EXAMPLES/Tape2007/SOURCE_002 | 13 +
EXAMPLES/Tape2007/SOURCE_003 | 13 +
EXAMPLES/Tape2007/SOURCE_004 | 13 +
EXAMPLES/Tape2007/SOURCE_005 | 13 +
EXAMPLES/Tape2007/SOURCE_006 | 13 +
EXAMPLES/Tape2007/SOURCE_007 | 13 +
EXAMPLES/Tape2007/SOURCE_008 | 13 +
EXAMPLES/Tape2007/SOURCE_009 | 13 +
EXAMPLES/Tape2007/SOURCE_010 | 13 +
EXAMPLES/Tape2007/SOURCE_011 | 13 +
EXAMPLES/Tape2007/SOURCE_012 | 13 +
EXAMPLES/Tape2007/SOURCE_013 | 13 +
EXAMPLES/Tape2007/SOURCE_014 | 13 +
EXAMPLES/Tape2007/SOURCE_015 | 13 +
EXAMPLES/Tape2007/SOURCE_016 | 13 +
EXAMPLES/Tape2007/SOURCE_017 | 13 +
EXAMPLES/Tape2007/SOURCE_018 | 13 +
EXAMPLES/Tape2007/SOURCE_019 | 13 +
EXAMPLES/Tape2007/SOURCE_020 | 13 +
EXAMPLES/Tape2007/SOURCE_021 | 13 +
EXAMPLES/Tape2007/SOURCE_022 | 13 +
EXAMPLES/Tape2007/SOURCE_023 | 13 +
EXAMPLES/Tape2007/SOURCE_024 | 13 +
EXAMPLES/Tape2007/SOURCE_025 | 13 +
EXAMPLES/Tape2007/interfaces_Tape2007.dat | 18 +
EXAMPLES/Tape2007/model_velocity.dat_checker | 40000 +++++++++++++++++++
EXAMPLES/Tape2007/process_checker.sh | 68 +
EXAMPLES/Tape2007/run_this_example.sh | 65 +
.../Tape2007/wavefield_Tape2007_132rec_checker.pdf | Bin 0 -> 24808 bytes
.../Tape2007/wavefield_Tape2007_onerec_homo.pdf | Bin 0 -> 11382 bytes
EXAMPLES/Tape2007_kernel/Par_file_Tape2007_onerec | 172 +
EXAMPLES/Tape2007_kernel/README | 32 +
EXAMPLES/Tape2007_kernel/SOURCE_001 | 13 +
.../Tape2007_kernel/adj_seismogram_Tape2007.f90 | 176 +
EXAMPLES/Tape2007_kernel/interfaces_Tape2007.dat | 18 +
.../kernel_Tape2007_kernel_onerec.pdf | Bin 0 -> 9849 bytes
EXAMPLES/Tape2007_kernel/process_kernel.sh | 24 +
EXAMPLES/Tape2007_kernel/run_this_example.sh | 65 +
EXAMPLES/Tromp2005/Par_file_Tromp2005 | 171 +
EXAMPLES/Tromp2005/Par_file_Tromp2005_s100 | 171 +
EXAMPLES/Tromp2005/README | 47 +
EXAMPLES/Tromp2005/SOURCE_Tromp2005 | 13 +
EXAMPLES/Tromp2005/SOURCE_Tromp2005_s100 | 13 +
EXAMPLES/Tromp2005/interfaces_Tromp2005.dat | 18 +
EXAMPLES/Tromp2005/interfaces_Tromp2005_s100.dat | 18 +
EXAMPLES/Tromp2005/run_this_example.sh | 64 +
EXAMPLES/Tromp2005/wavefield_Tromp2005_PSV.pdf | 59 +
EXAMPLES/Tromp2005/wavefield_Tromp2005_SH.pdf | Bin 0 -> 14712 bytes
EXAMPLES/Tromp2005_kernel/Par_file_Tromp2005 | 171 +
EXAMPLES/Tromp2005_kernel/README | 32 +
EXAMPLES/Tromp2005_kernel/SOURCE_Tromp2005 | 13 +
.../Tromp2005_kernel/adj_seismogram_Tromp2005.f90 | 176 +
EXAMPLES/Tromp2005_kernel/interfaces_Tromp2005.dat | 18 +
.../kernel_Tromp2005_kernel_PSV.pdf | Bin 0 -> 15185 bytes
EXAMPLES/Tromp2005_kernel/process_kernel.sh | 24 +
EXAMPLES/Tromp2005_kernel/run_this_example.sh | 65 +
...PML_layers_added_to_simple_square_with_Gmsh.geo | 209 +
.../mesh_homogeneous_with_CPML_before_tilting.msh | 16133 ++++++++
.../how_to_add_CPML_layers_in_the_Gmsh_mesher.txt | 7 +
.../simple_square_with_Gmsh.geo | 24 +
...RE_IS_THE_REASON_WHY_THIS_EXAMPLE_IS_BROKEN.txt | 3 +
.../INDUSTRIAL_FORMAT/Par_file | 174 +
.../INDUSTRIAL_FORMAT/README | 14 +
.../INDUSTRIAL_FORMAT/SEG_2D_SALT/vp.H | 12 +
.../INDUSTRIAL_FORMAT/SEG_2D_SALT/vp.bin | Bin 0 -> 387000 bytes
.../INDUSTRIAL_FORMAT/SOURCE | 13 +
.../INDUSTRIAL_FORMAT/constants.h | 186 +
.../INDUSTRIAL_FORMAT/interpolate.bash | 15 +
.../INDUSTRIAL_FORMAT/interpolate.f90 | 228 +
.../INDUSTRIAL_FORMAT/run.bash | 11 +
...RE_IS_THE_REASON_WHY_THIS_EXAMPLE_IS_BROKEN.txt | 3 +
.../noise_layered/adj_mask.f90 | 440 +
.../noise_layered/changemask | 27 +
.../noise_layered/changerec | 26 +
.../noise_layered/clean | 13 +
.../noise_layered/getdirect | 10 +
.../noise_layered/masks/drillbit | 26 +
.../noise_layered/masks/uniform | 28 +
.../noise_layered/model_0/Par_file_fair | 171 +
.../noise_layered/model_0/Par_file_good | 171 +
.../noise_layered/model_0/SOURCE_noise | 13 +
.../noise_layered/model_0/interfaces_fair | 26 +
.../noise_layered/model_0/interfaces_good | 26 +
.../noise_layered/model_1/Par_file_best | 173 +
.../noise_layered/model_1/Par_file_fair | 173 +
.../noise_layered/model_1/Par_file_good | 173 +
.../noise_layered/model_1/SOURCE_noise | 13 +
.../noise_layered/model_1/interfaces_best | 36 +
.../noise_layered/model_1/interfaces_fair | 36 +
.../noise_layered/model_1/interfaces_good | 36 +
.../noise_layered/model_2/Par_file_fair | 175 +
.../noise_layered/model_2/Par_file_good | 175 +
.../noise_layered/model_2/SOURCE_noise | 13 +
.../noise_layered/model_2/interfaces_fair | 46 +
.../noise_layered/model_2/interfaces_good | 46 +
.../noise_layered/replicate | 41 +
.../noise_layered/run_adj | 58 +
.../noise_layered/run_all | 21 +
.../noise_layered/run_fwd | 72 +
...RE_IS_THE_REASON_WHY_THIS_EXAMPLE_IS_BROKEN.txt | 14 +
.../noise_uniform/Par_file_noise_1 | 171 +
.../noise_uniform/Par_file_noise_2 | 171 +
.../noise_uniform/Par_file_noise_3 | 171 +
.../noise_uniform/SOURCE_noise | 13 +
.../noise_uniform/STATIONS_noise | 3 +
.../noise_uniform/adj_cc.f90 | 429 +
.../noise_uniform/changemask | 27 +
.../noise_uniform/clean | 13 +
.../noise_uniform/masks/nonuniform | 38 +
.../noise_uniform/masks/uniform | 28 +
.../noise_uniform/replicate | 41 +
.../noise_uniform/run_this_example.sh | 10 +
.../noise_uniform/uniform.dat | 26 +
.../noise_uniform/use_negative_branch | 93 +
.../noise_uniform/use_positive_branch | 93 +
.../Par_file_attenuation_2D | 171 +
.../README | 52 +
.../SOURCE_attenuation_2D | 13 +
.../Ux_time_analytical_solution_viscoelastic.dat | 5290 +++
.../Uz_time_analytical_solution_viscoelastic.dat | 5290 +++
...arcione_causality_problem_fixed_by_Xie_Zhinan.f | 7677 ++++
.../interfaces_attenuation_analytic.dat | 25 +
...coelastic_Carcione_ori_with_causality_problem.f | 7673 ++++
.../params_carcione.dat | 3 +
.../plot_compare_to_analytical_solution.gnu | 14 +
.../run_this_example.sh | 65 +
.../interf_paco.dat | 212 +
.../interface_sinus.dat | 75 +
.../interfaces_no_canyon.dat | 26 +
.../unused_older_examples_DATA_to_sort/profilx.dat | 215 +
.../unused_older_examples_DATA_to_sort/profily.dat | 209 +
.../topoarticle.dat | 210 +
.../Par_file_acoustic_poroelastic | 181 +
EXAMPLES/acoustic_poroelastic/README | 28 +
.../SOURCE_acoustic_poroelastic | 13 +
.../interfaces_acoustic_poroelastic.dat | 34 +
EXAMPLES/acoustic_poroelastic/run_this_example.sh | 64 +
EXAMPLES/anisotropic_zinc_crystal/DATA/Par_file | 188 +
EXAMPLES/anisotropic_zinc_crystal/DATA/SOURCE | 17 +
.../anisotropic_zinc_crystal/DATA/topoaniso.dat | 26 +
.../anisotropic_zinc_crystal/run_this_example.sh | 6 +
EXAMPLES/attenuation/Par_file_attenuation_2D | 171 +
EXAMPLES/attenuation/README | 52 +
EXAMPLES/attenuation/SOURCE_attenuation_2D | 13 +
.../Ux_time_analytical_solution_viscoelastic.dat | 5290 +++
.../Uz_time_analytical_solution_viscoelastic.dat | 5290 +++
...arcione_causality_problem_fixed_by_Xie_Zhinan.f | 7690 ++++
.../interfaces_attenuation_analytic.dat | 25 +
...coelastic_Carcione_ori_with_causality_problem.f | 7673 ++++
EXAMPLES/attenuation/params_carcione.dat | 3 +
.../plot_compare_to_analytical_solution.gnu | 14 +
EXAMPLES/attenuation/run_this_example.sh | 65 +
EXAMPLES/canyon/Par_file_canyon | 171 +
EXAMPLES/canyon/SOURCE_canyon | 17 +
EXAMPLES/canyon/mesh/canyon_absorbing_surface_file | 181 +
EXAMPLES/canyon/mesh/canyon_free_surface_file | 161 +
EXAMPLES/canyon/mesh/canyon_materials_file | 4000 ++
EXAMPLES/canyon/mesh/canyon_mesh_file | 4001 ++
EXAMPLES/canyon/mesh/canyon_nodes_coords_file | 4172 ++
EXAMPLES/canyon/run_this_example.sh | 65 +
.../fluid_solid_external_mesh/Par_file_fluid_solid | 181 +
.../fluid_solid/fluid_solid_external_mesh/README | 11 +
.../fluid_solid_external_mesh/SOURCE_fluid_solid | 13 +
.../fluid_solid/fluid_solid_external_mesh/mesh/mat | 5587 +++
.../fluid_solid_external_mesh/mesh/mesh | 5588 +++
.../fluid_solid_external_mesh/mesh/nodes_coords | 5862 +++
.../fluid_solid_external_mesh/mesh/surface_abs | 218 +
.../fluid_solid_external_mesh/mesh/surface_free | 329 +
.../fluid_solid_external_mesh/run_this_example.sh | 64 +
.../Par_file_fluid_solid | 176 +
.../README | 12 +
.../SOURCE_fluid_solid | 13 +
.../interfaces_fluid_flat.dat | 38 +
.../run_this_example.sh | 64 +
.../Par_file_fluid_solid | 176 +
.../README | 12 +
.../SOURCE_fluid_solid | 13 +
.../generate_topo_sinusoide.f90 | 41 +
.../interfaces_fluid_sinusoidal.dat | 836 +
.../run_this_example.sh | 64 +
EXAMPLES/global_Earth_ak135f/DATA/Par_file | 183 +
EXAMPLES/global_Earth_ak135f/DATA/SOURCE | 13 +
...ate_mesh_AK135F_2D_with_central_cube_no_PML.F90 | 1451 +
.../make_specific_mesher_for_2D_Earth.csh | 12 +
EXAMPLES/global_Earth_ak135f/run_this_example.sh | 8 +
EXAMPLES/initial_plane_wave/Par_file_Slave | 173 +
EXAMPLES/initial_plane_wave/Par_file_Slave_for | 173 +
EXAMPLES/initial_plane_wave/Par_file_Slave_kernel | 173 +
EXAMPLES/initial_plane_wave/SOURCE_Slave | 13 +
EXAMPLES/initial_plane_wave/adj.sh | 44 +
EXAMPLES/initial_plane_wave/array_geo.m | 44 +
EXAMPLES/initial_plane_wave/interfaces_Slave.dat | 19 +
EXAMPLES/initial_plane_wave/isochron.m | 18 +
EXAMPLES/initial_plane_wave/plot_field.m | 14 +
EXAMPLES/initial_plane_wave/plot_kernel.m | 90 +
EXAMPLES/initial_plane_wave/readme | 12 +
EXAMPLES/initial_plane_wave/run.bash | 12 +
EXAMPLES/initial_plane_wave/run_for_ker.sh | 69 +
EXAMPLES/initial_plane_wave/run_this_example.sh | 65 +
EXAMPLES/initial_plane_wave/select_adj.m | 74 +
EXAMPLES/initial_plane_wave/set_source.bash | 29 +
EXAMPLES/initial_plane_wave/stack_kernel.m | 58 +
EXAMPLES/initial_plane_wave/ttplane.m | 50 +
...e_their_format_when_new_parameters_are_added.py | 797 +
.../salt_dome_CUBIT_mesh/CPML_homogeneous/Par_file | 184 +
.../salt_dome_CUBIT_mesh/CPML_homogeneous/SOURCE | 14 +
.../salt_dome_CUBIT_mesh/CPML_homogeneous/STATIONS | 1 +
.../modelY1_PML_inner_edge_for_plane_wave_file | 323 +
.../modelY1_absorbing_surface_file | 335 +
.../CPML_homogeneous/modelY1_elements_CPML_list | 985 +
.../CPML_homogeneous/modelY1_free_surface_file | 127 +
.../CPML_homogeneous/modelY1_materials_file | 12868 ++++++
.../CPML_homogeneous/modelY1_mesh_file | 12869 ++++++
.../CPML_homogeneous/modelY1_nodes_coords_file | 13100 ++++++
.../CPML_homogeneous/run_this_example.sh | 72 +
.../CPML_normal_fluid_solid/Par_file | 191 +
.../CPML_normal_fluid_solid/SOURCE | 14 +
.../CPML_normal_fluid_solid/STATIONS | 1 +
.../create_edge_file_to_add_PML_layer.bash | 6 +
.../modelY1_PML_inner_edge_for_plane_wave_file | 323 +
.../modelY1_absorbing_surface_file | 335 +
.../modelY1_elements_CPML_list | 985 +
.../modelY1_free_surface_file | 127 +
.../modelY1_geometry_ACIS_ascii_format.sat | 1705 +
.../modelY1_geometry_IGES_ascii_format.iges | 1249 +
.../modelY1_geometry_STL_ascii_format.txt | 2992 ++
.../CPML_normal_fluid_solid/modelY1_materials_file | 12868 ++++++
.../CPML_normal_fluid_solid/modelY1_mesh_file | 12869 ++++++
.../modelY1_nodes_coords_file | 13100 ++++++
.../modelY1.cubit | 288 +
.../modelY1_PML.cubit | 282 +
.../modelY1_PML_30.cubit | 282 +
.../modelY1_PML_50.cubit | 287 +
.../modelY1_PML_fine.cubit | 282 +
.../program_add_bottom_layer.f90 | 210 +
.../program_add_left_layer.f90 | 191 +
.../program_add_right_layer.f90 | 191 +
.../CPML_normal_fluid_solid/run_this_example.sh | 75 +
.../CPML_normal_solid_only/Par_file | 190 +
.../CPML_normal_solid_only/SOURCE | 14 +
.../CPML_normal_solid_only/STATIONS | 1 +
.../modelY1_PML_inner_edge_for_plane_wave_file | 323 +
.../modelY1_absorbing_surface_file | 335 +
.../modelY1_elements_CPML_list | 985 +
.../modelY1_free_surface_file | 127 +
.../CPML_normal_solid_only/modelY1_materials_file | 12868 ++++++
.../CPML_normal_solid_only/modelY1_mesh_file | 12869 ++++++
.../modelY1_nodes_coords_file | 13100 ++++++
.../CPML_normal_solid_only/run_this_example.sh | 75 +
.../Stacey_homogeneous/Par_file | 184 +
.../salt_dome_CUBIT_mesh/Stacey_homogeneous/SOURCE | 14 +
.../modelY1_absorbing_surface_file | 323 +
.../Stacey_homogeneous/modelY1_free_surface_file | 121 +
.../Stacey_homogeneous/modelY1_materials_file | 11884 ++++++
.../Stacey_homogeneous/modelY1_mesh_file | 11885 ++++++
.../Stacey_homogeneous/modelY1_nodes_coords_file | 12107 ++++++
.../Stacey_homogeneous/run_this_example.sh | 69 +
.../Stacey_normal_fluid_solid/Par_file | 191 +
.../Stacey_normal_fluid_solid/SOURCE | 14 +
.../modelY1_absorbing_surface_file | 323 +
.../modelY1_free_surface_file | 121 +
.../modelY1_materials_file | 11884 ++++++
.../Stacey_normal_fluid_solid/modelY1_mesh_file | 11885 ++++++
.../modelY1_nodes_coords_file | 12107 ++++++
.../Stacey_normal_fluid_solid/run_this_example.sh | 71 +
EXAMPLES/semi_infinite_homo/Par_file_elastic_2D | 171 +
EXAMPLES/semi_infinite_homo/SOURCE_elastic_2D | 13 +
EXAMPLES/semi_infinite_homo/Ux_file.dat | 3000 ++
EXAMPLES/semi_infinite_homo/Uz_file.dat | 3000 ++
.../interfaces_elastic_analytic.dat | 25 +
.../plot_compare_to_analytical_solution.gnu | 44 +
.../plot_points_per_wavelength_histogram.gnu | 9 +
EXAMPLES/semi_infinite_homo/run_this_example.sh | 65 +
.../Par_file_simple_topo | 177 +
.../README | 24 +
.../SOURCE_simple_topo | 13 +
.../interfaces_simple_topo_curved.dat | 48 +
.../interfaces_simple_topo_flat.dat | 46 +
.../run_this_example.sh | 64 +
.../Par_file_Abel_Balanche_bathy_source_solid | 181 +
.../SOURCE_Abel_Balanche_bathy_source_solid | 13 +
.../interfaces_Abel_Brest_bathymetry.dat | 234 +
EXAMPLES/thermocline/run_this_example.sh | 64 +
EXAMPLES/vi_all_2D_Par_files.csh | 10 +
335 files changed, 432663 insertions(+)
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