[cig-commits] [commit] devel, master: updated README files for examples (4d96129)
cig_noreply at geodynamics.org
cig_noreply at geodynamics.org
Wed Jun 18 16:48:12 PDT 2014
Repository : https://github.com/geodynamics/specfem3d
On branches: devel,master
Link : https://github.com/geodynamics/specfem3d/compare/6026e367984905ab133865f62fa6293b343759b9...47f703851338234f96397e7da9fbff63d8178b8a
>---------------------------------------------------------------
commit 4d96129077934534b7cfae81269f71c0580baa5c
Author: Carl Tape <carltape at gi.alaska.edu>
Date: Sat Jan 29 23:22:37 2011 +0000
updated README files for examples
>---------------------------------------------------------------
4d96129077934534b7cfae81269f71c0580baa5c
homogeneous_halfspace/README | 2 +-
layered_halfspace/README | 2 +-
tomographic_model/README | 29 ++++++++++++++++-------------
waterlayered_halfspace/README | 4 ++--
4 files changed, 20 insertions(+), 17 deletions(-)
diff --git a/homogeneous_halfspace/README b/homogeneous_halfspace/README
index 8b59d8c..7da7664 100644
--- a/homogeneous_halfspace/README
+++ b/homogeneous_halfspace/README
@@ -61,7 +61,7 @@ step-by-step tutorial:
> make xdecompose_mesh_SCOTCH
- run decomposer
- (example assumes 4 partitions with mesh files in ../examples/homogeneous_halfspace/MESH/)
+ (example assumes 4 partitions with mesh files in examples/homogeneous_halfspace/MESH/)
> ./bin/xdecompose_mesh_SCOTCH 4 examples/homogeneous_halfspace/MESH/ in_out_files/DATABASES_MPI/
this creates mesh partitions "proc000***_Database" in directory in_out_files/DATABASES_MPI/.
diff --git a/layered_halfspace/README b/layered_halfspace/README
index 52f0a98..ba8817f 100644
--- a/layered_halfspace/README
+++ b/layered_halfspace/README
@@ -50,7 +50,7 @@ step-by-step tutorial:
2. decompose mesh files:
- run decomposer in directory bin/:
- (example assumes 4 partitions with mesh files in OUTPUT_FILES/)
+ (example assumes 4 partitions with mesh files in examples/layered_halfspace/MESH/)
> cd SPECFEM3D
> make
> ./bin/xdecompose_mesh_SCOTCH 4 examples/layered_halfspace/MESH/ in_out_files/DATABASES_MPI/
diff --git a/tomographic_model/README b/tomographic_model/README
index 366045c..1bf492b 100644
--- a/tomographic_model/README
+++ b/tomographic_model/README
@@ -21,24 +21,30 @@ step-by-step tutorial:
claro -> Menu "Tools" -> "Play Journal File" ... and select file: "tomoblock_mesh.py"
this creates all the mesh files in subdirectory MESH/
+ note: this is a simple uniform block mesh
2. create tomography_model file:
- in examples/tomographic_model, run bash script:
-
- > sh create_tomography_model_file.sh
+ - in examples/tomographic_model, run bash script:
+ > sh create_tomography_model_file.sh
which creates an example model: tomography_model.xyz
( elastic model with a constant velocity gradient with depth)
- copy this file into directory SPECFEM3D/in_data_files/
+ - copy this file into directory SPECFEM3D/in_data_files/
+ > cp tomography_model.xyz ../../in_data_files/
+
+ - copy Par_file, CMTSOLUTION & STATIONS files provided in this examples directory to SPECFEM3D/in_data_files/
+ > cd in_data_files/
+ > cp * ../../../in_data_files/
+ note: these are needed prior to running xgenerate_databases
3. decompose mesh files:
- - run decomposer in directory decompose_mesh_SCOTCH/:
- (example assumes 4 partitions with mesh files in OUTPUT_FILES/)
+ - run decomposer
+ (example assumes 4 partitions with mesh files in examples/tomographic_model/MESH/)
> cd SPECFEM3D
> make
> ./bin/xdecompose_mesh_SCOTCH 4 examples/tomographic_model/MESH/ in_out_files/DATABASES_MPI/
@@ -50,7 +56,6 @@ step-by-step tutorial:
4. generate databases:
- compile generate_databases from SPECFEM3D/ :
- > cd SPECFEM3D
> make xgenerate_databases
- submit job script
@@ -59,18 +64,16 @@ step-by-step tutorial:
5. run simulation:
- - copy three files -- Par_file CMTSOLUTION STATIONS -- from
- SPECFEM3D/examples/tomographic_model/ to SPECFEM3D/in_data_files/
-
- compile specfem3D:
> make xspecfem3D
- submit job script:
> qsub go_solver_pbs.bash
- - when the job is complete, you should have 3 sets (semd,semv,sema)
- of 672 (ls -1 *semd | wc) in the directory in_out_files/OUTPUT_FILES,
- as well as 3 timestamp****** files
+ the simulation will take about 10 minutes
+ when the job is complete, you should have 3 sets (semd,semv,sema)
+ of 18 (ls -1 *semd | wc) in directory in_out_files/OUTPUT_FILES,
+ as well as 9 timestamp****** files
===========================================================
diff --git a/waterlayered_halfspace/README b/waterlayered_halfspace/README
index eff4b43..1ab1fe5 100644
--- a/waterlayered_halfspace/README
+++ b/waterlayered_halfspace/README
@@ -26,8 +26,8 @@ step-by-step tutorial:
2. decompose mesh files:
- - run decomposer in directory decompose_mesh_SCOTCH/:
- (example assumes 4 partitions with mesh files in OUTPUT_FILES/)
+ - run decomposer
+ (example assumes 4 partitions with mesh files in examples/waterlayered_halfspace/MESH/)
> cd SPECFEM3D
> make
> ./bin/xdecompose_mesh_SCOTCH 4 examples/waterlayered_halfspace/MESH/ in_out_files/DATABASES_MPI/
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