[cig-commits] [commit] devel,master: added Surendra's cleaned version of CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/block_mesh.py and removed old symbolic links; also updated the README (added a few paragraphs sent by Emanuele Casarotti) (2715072)
cig_noreply at geodynamics.org
cig_noreply at geodynamics.org
Wed Jun 18 16:54:55 PDT 2014
Repository : https://github.com/geodynamics/specfem3d
On branches: devel,master
Link : https://github.com/geodynamics/specfem3d/compare/6026e367984905ab133865f62fa6293b343759b9...47f703851338234f96397e7da9fbff63d8178b8a
>---------------------------------------------------------------
commit 2715072ac5cfdfe7b4ee86fc75268e316b3bf31b
Author: Dimitri Komatitsch <komatitsch at lma.cnrs-mrs.fr>
Date: Fri Jun 6 01:42:32 2014 +0200
added Surendra's cleaned version of CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/block_mesh.py and removed old symbolic links;
also updated the README (added a few paragraphs sent by Emanuele Casarotti)
>---------------------------------------------------------------
2715072ac5cfdfe7b4ee86fc75268e316b3bf31b
.../block_mesh.py | 1 -
.../boundary_definition.py | 1 -
.../cubit2specfem3d.py | 1 -
.../block_mesh.py | 1 -
.../boundary_definition.py | 1 -
.../cubit2specfem3d.py | 1 -
.../block_mesh.py | 1 -
.../boundary_definition.py | 1 -
.../cubit2specfem3d.py | 1 -
.../block_mesh.py | 1 -
.../boundary_definition.py | 1 -
.../cubit2specfem3d.py | 1 -
.../block_mesh.py | 1 -
.../boundary_definition.py | 1 -
.../cubit2specfem3d.py | 1 -
.../block_mesh.py | 1 -
.../boundary_definition.py | 1 -
.../cubit2specfem3d.py | 1 -
Mount_StHelens/boundary_definition.py | 1 -
Mount_StHelens/cubit2specfem3d.py | 1 -
README | 32 ++++++++++++++++--
fault_examples/tpv15/boundary_definition.py | 1 -
fault_examples/tpv15/cubit2specfem3d.py | 1 -
fault_examples/tpv5/boundary_definition.py | 1 -
fault_examples/tpv5/cubit2specfem3d.py | 1 -
.../block_mesh.py | 1 -
.../boundary_definition.py | 1 -
.../cubit2specfem3d.py | 1 -
.../block_mesh.py | 39 +++++++++++++++++++++-
.../boundary_definition.py | 1 -
.../cubit2specfem3d.py | 1 -
.../block_mesh.py | 2 +-
.../boundary_definition.py | 1 -
.../cubit2specfem3d.py | 1 -
homogeneous_poroelastic/block_mesh.py | 1 -
homogeneous_poroelastic/boundary_definition.py | 1 -
homogeneous_poroelastic/cubit2specfem3d.py | 1 -
tomographic_model/boundary_definition.py | 1 -
tomographic_model/cubit2specfem3d.py | 1 -
39 files changed, 69 insertions(+), 40 deletions(-)
diff --git a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/block_mesh.py b/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/block_mesh.py
deleted file mode 120000
index b7f9fdf..0000000
--- a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/block_mesh.py
+++ /dev/null
@@ -1 +0,0 @@
-../CUBIT_GEOCUBIT/geocubitlib/block_mesh.py
\ No newline at end of file
diff --git a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/boundary_definition.py b/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/boundary_definition.py
deleted file mode 120000
index 71fe377..0000000
--- a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/boundary_definition.py
+++ /dev/null
@@ -1 +0,0 @@
-../../../CUBIT_GEOCUBIT/geocubitlib/boundary_definition.py
\ No newline at end of file
diff --git a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/cubit2specfem3d.py b/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/cubit2specfem3d.py
deleted file mode 120000
index 8d60d23..0000000
--- a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_5sides/cubit2specfem3d.py
+++ /dev/null
@@ -1 +0,0 @@
-../../../CUBIT_GEOCUBIT/geocubitlib/cubit2specfem3d.py
\ No newline at end of file
diff --git a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/block_mesh.py b/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/block_mesh.py
deleted file mode 120000
index b7f9fdf..0000000
--- a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/block_mesh.py
+++ /dev/null
@@ -1 +0,0 @@
-../CUBIT_GEOCUBIT/geocubitlib/block_mesh.py
\ No newline at end of file
diff --git a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/boundary_definition.py b/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/boundary_definition.py
deleted file mode 120000
index 71fe377..0000000
--- a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/boundary_definition.py
+++ /dev/null
@@ -1 +0,0 @@
-../../../CUBIT_GEOCUBIT/geocubitlib/boundary_definition.py
\ No newline at end of file
diff --git a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/cubit2specfem3d.py b/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/cubit2specfem3d.py
deleted file mode 120000
index 8d60d23..0000000
--- a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_absorbing_CPML_6sides/cubit2specfem3d.py
+++ /dev/null
@@ -1 +0,0 @@
-../../../CUBIT_GEOCUBIT/geocubitlib/cubit2specfem3d.py
\ No newline at end of file
diff --git a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/block_mesh.py b/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/block_mesh.py
deleted file mode 120000
index b7f9fdf..0000000
--- a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/block_mesh.py
+++ /dev/null
@@ -1 +0,0 @@
-../CUBIT_GEOCUBIT/geocubitlib/block_mesh.py
\ No newline at end of file
diff --git a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/boundary_definition.py b/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/boundary_definition.py
deleted file mode 120000
index 71fe377..0000000
--- a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/boundary_definition.py
+++ /dev/null
@@ -1 +0,0 @@
-../../../CUBIT_GEOCUBIT/geocubitlib/boundary_definition.py
\ No newline at end of file
diff --git a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/cubit2specfem3d.py b/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/cubit2specfem3d.py
deleted file mode 120000
index 8d60d23..0000000
--- a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_5sides/cubit2specfem3d.py
+++ /dev/null
@@ -1 +0,0 @@
-../../../CUBIT_GEOCUBIT/geocubitlib/cubit2specfem3d.py
\ No newline at end of file
diff --git a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/block_mesh.py b/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/block_mesh.py
deleted file mode 120000
index b7f9fdf..0000000
--- a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/block_mesh.py
+++ /dev/null
@@ -1 +0,0 @@
-../CUBIT_GEOCUBIT/geocubitlib/block_mesh.py
\ No newline at end of file
diff --git a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/boundary_definition.py b/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/boundary_definition.py
deleted file mode 120000
index 71fe377..0000000
--- a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/boundary_definition.py
+++ /dev/null
@@ -1 +0,0 @@
-../../../CUBIT_GEOCUBIT/geocubitlib/boundary_definition.py
\ No newline at end of file
diff --git a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/cubit2specfem3d.py b/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/cubit2specfem3d.py
deleted file mode 120000
index 8d60d23..0000000
--- a/CPML_examples/homogeneous_halfspace_HEX8_acoustic_elastic_absorbing_CPML_6sides/cubit2specfem3d.py
+++ /dev/null
@@ -1 +0,0 @@
-../../../CUBIT_GEOCUBIT/geocubitlib/cubit2specfem3d.py
\ No newline at end of file
diff --git a/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/block_mesh.py b/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/block_mesh.py
deleted file mode 120000
index b7f9fdf..0000000
--- a/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/block_mesh.py
+++ /dev/null
@@ -1 +0,0 @@
-../CUBIT_GEOCUBIT/geocubitlib/block_mesh.py
\ No newline at end of file
diff --git a/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/boundary_definition.py b/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/boundary_definition.py
deleted file mode 120000
index 71fe377..0000000
--- a/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/boundary_definition.py
+++ /dev/null
@@ -1 +0,0 @@
-../../../CUBIT_GEOCUBIT/geocubitlib/boundary_definition.py
\ No newline at end of file
diff --git a/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/cubit2specfem3d.py b/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/cubit2specfem3d.py
deleted file mode 120000
index 8d60d23..0000000
--- a/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_5sides/cubit2specfem3d.py
+++ /dev/null
@@ -1 +0,0 @@
-../../../CUBIT_GEOCUBIT/geocubitlib/cubit2specfem3d.py
\ No newline at end of file
diff --git a/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/block_mesh.py b/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/block_mesh.py
deleted file mode 120000
index b7f9fdf..0000000
--- a/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/block_mesh.py
+++ /dev/null
@@ -1 +0,0 @@
-../CUBIT_GEOCUBIT/geocubitlib/block_mesh.py
\ No newline at end of file
diff --git a/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/boundary_definition.py b/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/boundary_definition.py
deleted file mode 120000
index 71fe377..0000000
--- a/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/boundary_definition.py
+++ /dev/null
@@ -1 +0,0 @@
-../../../CUBIT_GEOCUBIT/geocubitlib/boundary_definition.py
\ No newline at end of file
diff --git a/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/cubit2specfem3d.py b/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/cubit2specfem3d.py
deleted file mode 120000
index 8d60d23..0000000
--- a/CPML_examples/homogeneous_halfspace_HEX8_elastic_absorbing_CPML_6sides/cubit2specfem3d.py
+++ /dev/null
@@ -1 +0,0 @@
-../../../CUBIT_GEOCUBIT/geocubitlib/cubit2specfem3d.py
\ No newline at end of file
diff --git a/Mount_StHelens/boundary_definition.py b/Mount_StHelens/boundary_definition.py
deleted file mode 120000
index d4dcc5f..0000000
--- a/Mount_StHelens/boundary_definition.py
+++ /dev/null
@@ -1 +0,0 @@
-../../CUBIT_GEOCUBIT/geocubitlib/boundary_definition.py
\ No newline at end of file
diff --git a/Mount_StHelens/cubit2specfem3d.py b/Mount_StHelens/cubit2specfem3d.py
deleted file mode 120000
index f70980c..0000000
--- a/Mount_StHelens/cubit2specfem3d.py
+++ /dev/null
@@ -1 +0,0 @@
-../../CUBIT_GEOCUBIT/geocubitlib/cubit2specfem3d.py
\ No newline at end of file
diff --git a/README b/README
index 439d11f..b785729 100644
--- a/README
+++ b/README
@@ -52,9 +52,37 @@ you can follow the examples in:
- fault_examples/
+please consider submitting your own example to this package!
+email us: cig-seismo AT geodynamics.org
+VERY IMPORTANT: Note from Emanuele Casarotti about how to set up the CUBIT (now called TRELIS) and GEOCUBIT meshing packages:
+you should set the pythonpath as in the example "homogeneous" (basically installing geocubit....)
-please consider submitting your own example to this package!
-email us: cig-seismo AT geodynamics.org
+CUBIT 14 for mac
+python2.5 setup.py install --install-lib=/Library/Python/2.5/site-packages/
+
+TRELIS 14 for mac
+python2.6 setup.py install --install-lib=/Library/Python/2.6/site-packages/
+
+on a Linux machine
+
+check that the version of cubit 32/64 bit matches the python version...
+
+in order to have the possibility to import cubit in a python script.
+
+export CUBITDIR=$CUBITHOME
+export CUBITLIB=$CUBITDIR/bin:$CUBITDIR/structure
+export PYTHONPATH=$PYTHONPATH:$CUBITDIR/bin:$CUBITDIR/structure
+export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$CUBITDIR/bin
+export PATH=$PATH:$CUBITDIR/bin
+
+if you own the root privileges
+
+python setup.py install
+
+or
+
+export PYTHONPATH=$PYTHONPATH:/import/u/u1/uaf/casarott/GEOCUBIT--experimental
+export PATH=$PATH:/import/u/u1/uaf/casarott/GEOCUBIT--experimental
diff --git a/fault_examples/tpv15/boundary_definition.py b/fault_examples/tpv15/boundary_definition.py
deleted file mode 120000
index 71fe377..0000000
--- a/fault_examples/tpv15/boundary_definition.py
+++ /dev/null
@@ -1 +0,0 @@
-../../../CUBIT_GEOCUBIT/geocubitlib/boundary_definition.py
\ No newline at end of file
diff --git a/fault_examples/tpv15/cubit2specfem3d.py b/fault_examples/tpv15/cubit2specfem3d.py
deleted file mode 120000
index 8d60d23..0000000
--- a/fault_examples/tpv15/cubit2specfem3d.py
+++ /dev/null
@@ -1 +0,0 @@
-../../../CUBIT_GEOCUBIT/geocubitlib/cubit2specfem3d.py
\ No newline at end of file
diff --git a/fault_examples/tpv5/boundary_definition.py b/fault_examples/tpv5/boundary_definition.py
deleted file mode 120000
index 71fe377..0000000
--- a/fault_examples/tpv5/boundary_definition.py
+++ /dev/null
@@ -1 +0,0 @@
-../../../CUBIT_GEOCUBIT/geocubitlib/boundary_definition.py
\ No newline at end of file
diff --git a/fault_examples/tpv5/cubit2specfem3d.py b/fault_examples/tpv5/cubit2specfem3d.py
deleted file mode 120000
index 8d60d23..0000000
--- a/fault_examples/tpv5/cubit2specfem3d.py
+++ /dev/null
@@ -1 +0,0 @@
-../../../CUBIT_GEOCUBIT/geocubitlib/cubit2specfem3d.py
\ No newline at end of file
diff --git a/homogeneous_halfspace_HEX27_elastic_no_absorbing/block_mesh.py b/homogeneous_halfspace_HEX27_elastic_no_absorbing/block_mesh.py
deleted file mode 120000
index b7f9fdf..0000000
--- a/homogeneous_halfspace_HEX27_elastic_no_absorbing/block_mesh.py
+++ /dev/null
@@ -1 +0,0 @@
-../CUBIT_GEOCUBIT/geocubitlib/block_mesh.py
\ No newline at end of file
diff --git a/homogeneous_halfspace_HEX27_elastic_no_absorbing/boundary_definition.py b/homogeneous_halfspace_HEX27_elastic_no_absorbing/boundary_definition.py
deleted file mode 120000
index d4dcc5f..0000000
--- a/homogeneous_halfspace_HEX27_elastic_no_absorbing/boundary_definition.py
+++ /dev/null
@@ -1 +0,0 @@
-../../CUBIT_GEOCUBIT/geocubitlib/boundary_definition.py
\ No newline at end of file
diff --git a/homogeneous_halfspace_HEX27_elastic_no_absorbing/cubit2specfem3d.py b/homogeneous_halfspace_HEX27_elastic_no_absorbing/cubit2specfem3d.py
deleted file mode 120000
index f70980c..0000000
--- a/homogeneous_halfspace_HEX27_elastic_no_absorbing/cubit2specfem3d.py
+++ /dev/null
@@ -1 +0,0 @@
-../../CUBIT_GEOCUBIT/geocubitlib/cubit2specfem3d.py
\ No newline at end of file
diff --git a/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh.py b/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh.py
deleted file mode 120000
index c5a382a..0000000
--- a/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh.py
+++ /dev/null
@@ -1 +0,0 @@
-../../CUBIT_GEOCUBIT/geocubitlib/block_mesh.py
\ No newline at end of file
diff --git a/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh.py b/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh.py
new file mode 100755
index 0000000..8637594
--- /dev/null
+++ b/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh.py
@@ -0,0 +1,38 @@
+#!python
+#!/usr/bin/env python
+
+# block_mesh.py is a script that generates mesh specific to homogenous halfspace example i.e., a uniform mesh of 134 km x 134 km x 60 km with an element size 3.75 km.
+# It is not applicable to other examples.
+
+import cubit
+import boundary_definition
+import cubit2specfem3d
+
+import os
+import sys
+
+cubit.cmd('reset')
+cubit.cmd('brick x 134000 y 134000 z 60000')
+cubit.cmd('volume 1 move x 67000 y 67000 z -30000')
+
+elementsize = 3750.0
+
+cubit.cmd('volume 1 size '+str(elementsize))
+cubit.cmd('mesh volume 1')
+
+boundary_definition.entities=['face']
+boundary_definition.define_bc(boundary_definition.entities,parallel=True)
+
+cubit.cmd('block 4 name "elastic 1" ') # elastic material region
+cubit.cmd('block 4 attribute count 7')
+cubit.cmd('block 4 attribute index 1 1') # flag for material: 1 for 1. material
+cubit.cmd('block 4 attribute index 2 2300') # rho
+cubit.cmd('block 4 attribute index 3 2800') # vp
+cubit.cmd('block 4 attribute index 4 1500') # vs
+cubit.cmd('block 4 attribute index 5 9000.0') # Qkappa
+cubit.cmd('block 4 attribute index 6 9000.0') # Qmu
+cubit.cmd('block 4 attribute index 7 0 ') # anisotropy_flag
+
+os.system('mkdir -p MESH')
+cubit2specfem3d.export2SPECFEM3D('MESH')
+
diff --git a/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/boundary_definition.py b/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/boundary_definition.py
deleted file mode 120000
index d4dcc5f..0000000
--- a/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/boundary_definition.py
+++ /dev/null
@@ -1 +0,0 @@
-../../CUBIT_GEOCUBIT/geocubitlib/boundary_definition.py
\ No newline at end of file
diff --git a/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/cubit2specfem3d.py b/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/cubit2specfem3d.py
deleted file mode 120000
index f70980c..0000000
--- a/homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/cubit2specfem3d.py
+++ /dev/null
@@ -1 +0,0 @@
-../../CUBIT_GEOCUBIT/geocubitlib/cubit2specfem3d.py
\ No newline at end of file
diff --git a/homogeneous_halfspace_HEX8_elastic_no_absorbing/block_mesh.py b/homogeneous_halfspace_HEX8_elastic_no_absorbing/block_mesh.py
index b7f9fdf..6e64dd4 120000
--- a/homogeneous_halfspace_HEX8_elastic_no_absorbing/block_mesh.py
+++ b/homogeneous_halfspace_HEX8_elastic_no_absorbing/block_mesh.py
@@ -1 +1 @@
-../CUBIT_GEOCUBIT/geocubitlib/block_mesh.py
\ No newline at end of file
+../homogeneous_halfspace_HEX8_elastic_absorbing_Stacey_5sides/block_mesh.py
\ No newline at end of file
diff --git a/homogeneous_halfspace_HEX8_elastic_no_absorbing/boundary_definition.py b/homogeneous_halfspace_HEX8_elastic_no_absorbing/boundary_definition.py
deleted file mode 120000
index d4dcc5f..0000000
--- a/homogeneous_halfspace_HEX8_elastic_no_absorbing/boundary_definition.py
+++ /dev/null
@@ -1 +0,0 @@
-../../CUBIT_GEOCUBIT/geocubitlib/boundary_definition.py
\ No newline at end of file
diff --git a/homogeneous_halfspace_HEX8_elastic_no_absorbing/cubit2specfem3d.py b/homogeneous_halfspace_HEX8_elastic_no_absorbing/cubit2specfem3d.py
deleted file mode 120000
index f70980c..0000000
--- a/homogeneous_halfspace_HEX8_elastic_no_absorbing/cubit2specfem3d.py
+++ /dev/null
@@ -1 +0,0 @@
-../../CUBIT_GEOCUBIT/geocubitlib/cubit2specfem3d.py
\ No newline at end of file
diff --git a/homogeneous_poroelastic/block_mesh.py b/homogeneous_poroelastic/block_mesh.py
deleted file mode 120000
index b7f9fdf..0000000
--- a/homogeneous_poroelastic/block_mesh.py
+++ /dev/null
@@ -1 +0,0 @@
-../CUBIT_GEOCUBIT/geocubitlib/block_mesh.py
\ No newline at end of file
diff --git a/homogeneous_poroelastic/boundary_definition.py b/homogeneous_poroelastic/boundary_definition.py
deleted file mode 120000
index d4dcc5f..0000000
--- a/homogeneous_poroelastic/boundary_definition.py
+++ /dev/null
@@ -1 +0,0 @@
-../../CUBIT_GEOCUBIT/geocubitlib/boundary_definition.py
\ No newline at end of file
diff --git a/homogeneous_poroelastic/cubit2specfem3d.py b/homogeneous_poroelastic/cubit2specfem3d.py
deleted file mode 120000
index f70980c..0000000
--- a/homogeneous_poroelastic/cubit2specfem3d.py
+++ /dev/null
@@ -1 +0,0 @@
-../../CUBIT_GEOCUBIT/geocubitlib/cubit2specfem3d.py
\ No newline at end of file
diff --git a/tomographic_model/boundary_definition.py b/tomographic_model/boundary_definition.py
deleted file mode 120000
index d4dcc5f..0000000
--- a/tomographic_model/boundary_definition.py
+++ /dev/null
@@ -1 +0,0 @@
-../../CUBIT_GEOCUBIT/geocubitlib/boundary_definition.py
\ No newline at end of file
diff --git a/tomographic_model/cubit2specfem3d.py b/tomographic_model/cubit2specfem3d.py
deleted file mode 120000
index f70980c..0000000
--- a/tomographic_model/cubit2specfem3d.py
+++ /dev/null
@@ -1 +0,0 @@
-../../CUBIT_GEOCUBIT/geocubitlib/cubit2specfem3d.py
\ No newline at end of file
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