[cig-commits] [commit] master's head updated: Update submodules in master (170e5f7)

[cig_noreply at geodynamics.org]

Repository : ssh://geoshell/specfem3d_globe

Branch 'master' now includes:

     5b53f58 explicit interface in write_seismograms.f90 to be able to use optional arguments as requested by DK
     9ad95ce Merge pull request #2 from mpbl/devel
     553861c Merge pull request #2 from mpbl/devel
     14a5045 Merge pull request #3 from mpbl/devel
     8e6616f Updated ASDF headers for scale factor, azimuth, and incident angle
     a2ed28e Merge remote-tracking branch 'upstream/devel' into devel
     1a6a6eb Merge pull request #4 from jas11/devel
     f2c60d7 updated some comments in README and in configure
     ae74771 Merge pull request #5 from komatits/devel
     9221b3e Fixed call of write_seismograms in iterate_time and an allocate issue with ASDF that was causing the output to hang when more than 6 processors were used to run the solver.
     3a17ce8 Fixes bug with ASDF where the sovler hangs when too many processors were used.
     32290d1 Removed print statements used for debugging the ASDF output
     0b6766c Merge pull request #6 from jas11/devel
     486137b reverted changes to flags.guess unintentionally made by James
     38bf62f Merge pull request #7 from komatits/devel
     81b8b05 switched to the right version of EXAMPLES
     59cf4ee Merge pull request #8 from komatits/devel
     74fa36e save_arrays_solver_adios bug corrected: local dimensions vary along interfaces.
     91ee696 Merge remote-tracking branch 'upstream/devel' into devel
     e01ed88 Merge pull request #9 from mpbl/devel
     f3ab45b added the logo of the Del Duca Foundation
     64c52e0 Merge pull request #10 from komatits/devel
     7082777 double precision literals in correct format, use myrank from specfem3d_par module added.
     21e5885 Merge pull request #11 from mpbl/devel
     a38b4a5 tried to patch
     26b149a changed a file
     ed8f2b4 Merge pull request #13 from komatits/devel
     398ae1b fixed all the warnings given by the Portland and Cray compilers on a Cray at ORNL. In particular, renamed all the variables or functions that had the same name as Fortran intrinsics (although that is correct in Fortran, it can be confusing and it also confuses syntax highlighting, and the Portland compiler prints a warning for each of them)
     98bda06 Merge pull request #15 from komatits/devel
     f32b71b Update flags.guess
     026de77 fixed three warnings / errors from the gfortran compiler about undefined behavior when aggressive loop vectorization is used by the compiler
     82f4981 Merge pull request #16 from komatits/devel
     3e83caf added a return statement after phtread_exit to please the copmiler.
     64e1b38 Merge pull request #17 from mpbl/devel
     c8b107d fixes solver_data_mpi.bp read in adios.
     099a4d3 Merge pull request #18 from mpbl/devel
     0e1fa7d improved replace_use_mpi_with_include_mpif_dot_h.pl and improved "use mpi" usage to make it work
     92f6f46 Merge pull request #19 from komatits/devel
     8142b71 added directory "IMPORTANT_BUG_benchmark_Ebru_Par_file"
     7ca3f38 Merge pull request #20 from komatits/devel
     08ae020 Update README_current_conclusions_from_Dimitri_about_the_bug.txt
     d70688a Update README_current_conclusions_from_Dimitri_about_the_bug.txt
     e87c874 Update gnuplot_script_plotall_curves.gnu
     3887afd Update README_current_conclusions_from_Dimitri_about_the_bug.txt
     bacdb30 Update README_current_conclusions_from_Dimitri_about_the_bug.txt
     1651cb3 Update README_current_conclusions_from_Dimitri_about_the_bug.txt
     316c065 Update README_current_conclusions_from_Dimitri_about_the_bug.txt
     7c5bffa added Par_file for each of the examples in IMPORTANT_BUG_benchmark_Ebru_Par_file (in each sub-directory)
     edef443 Merge pull request #22 from komatits/devel
     c37c9ce Update README_current_conclusions_from_Dimitri_about_the_bug.txt
     41abb48 added IMPORTANT_BUG_benchmark_Ebru_Par_file/s40rts_with_attenuation_for_Ebru_s_Par_file_is_OK
     fc7c0a7 Merge pull request #23 from komatits/devel
     a6310e3 added s40rts_with_attenuation for GNU gfortran and for Portland pgf90; both work fine and give the same seismograms as Intel ifort with or without mcmodel=medium
     7a3aa53 Merge pull request #30 from komatits/devel
     c246cf5 cosmetic changes to be able to use "meld" more efficiency to apply an old but useful change sent by a colleague last October
     34432ca Merge pull request #31 from komatits/devel
     b38ab36 final cosmetic changes
     5ae76f7 Merge pull request #32 from komatits/devel
     9cfa414 added a hash table to drastically speed up src/meshfem3D/model_crust.f90, which in turn drastically speeds up the mesher in the case of 3D models
     b9ed1dc Merge pull request #33 from komatits/devel
     a0a2875 fixed a typo in a comment
     a56548e Merge pull request #34 from komatits/devel
     e715f9c added IMPORTANT_BUG_benchmark_Ebru_Par_file/Ebru_s_runs_are_NOT_OK/the_bug_is_NOT_in_the_two_DK_DK_July_2013_restored_lines and IMPORTANT_BUG_benchmark_Ebru_Par_file/s40rts_with_attenuation_for_Ebru_s_Par_file_is_OK/specfem3d_globe_ifort_s40RTS_with_new_Th_Gilet_crustal_hash_table
     0ea7c2c Merge pull request #35 from komatits/devel
     b7d1c98 better comments in src/meshfem3D/model_crust.f90
     fffd8ea Merge pull request #36 from komatits/devel
     80f9d27 added IMPORTANT_BUG_benchmark_Ebru_Par_file/Ebru_s_runs_are_NOT_OK/the_bug_is_NOT_in_how_we_MPI_Bcast_the_s362ani_model
     73ad1d4 Merge pull request #37 from komatits/devel
     9daa3eb cosmetic changes in src/meshfem3D/model_s362ani.f90
     0440bda Merge pull request #38 from komatits/devel
     2f1f00c minor cosmetic change to be able to later fix the s362ani bug
     c58836e Merge pull request #39 from komatits/devel
     ee103b1 build: Fix some module dependencies in mesher.
     eb3759e build: Fix module dependencies in solver.
     bbc5532 build: Fix module dependencies in auxiliaries.
     d36048c build: Simplify linker rules using automatic vars.
     46b00e6 Merge pull request #40 from QuLogic/parallel-build
     41f2c30 improved the source code for attenuation models: fixed a double to single precision conversion statement, replaced Qmu = 0 with Qmu = 4999 in model_1dref.f90 because Qmu = 0 makes no sense
     9419f59 Merge pull request #41 from komatits/devel
     b19fbb4 commented out the call to meshfem3D_models_getatten_val(), which was making the code unreliable at least in the case of s362ani + attenuation (see https://github.com/geodynamics/specfem3d/issues/8 )
     573eae5 Merge pull request #42 from komatits/devel
     a629b85 removed directory "IMPORTANT_BUG_benchmark_Ebru_Par_file"
     9970030 Merge pull request #43 from komatits/devel
     f0c3e2a fixed two warnings from gfortran
     4e0c67e Merge pull request #44 from komatits/devel
     d9f7f36 commented out the "compile a trivial MPI program" test, which is not needed and which makes "configure" crash on several machines
     a353ab5 Merge pull request #45 from komatits/devel
     908d430 my initial idea of not calling meshfem3D_models_getatten_val() at all does not work because that routine calls another routine to compute tau values; I thus now only avoid the problematic lines in that routine
     bbdf11e Merge pull request #46 from komatits/devel
     f5a3132 added a new comment about the s362ani + ATTENUATION bug
     1a5b4a1 Merge pull request #47 from komatits/devel
     40002cb cosmetic changes to be able to later apply an old patch from Thomas Gillet to significantly speed up the mesher for model s362ani
     9f9faf7 Merge pull request #48 from komatits/devel
     567cb26 added a comment about -DFORCE_VECTORIZATION
     01a32b6 Merge pull request #49 from komatits/devel
     c15e7e2 added a patch from Thomas Gillet to drastically speed up mesh creation when model s362ani is used
     e776b18 fixed a typo in a comment
     cc9dcb8 Merge pull request #50 from komatits/devel
     7611ad3 updated the copyright headers and the users manual to version 6.0
     8b96932 Merge pull request #51 from komatits/devel
     607038b updated three headers that I had forgotten
     73e65c6 Merge pull request #52 from komatits/devel
     86b5dab - added a routine to compute the total mass of the Earth - fixed double precision compilation support, which was broken - changed USE_VERSION_5_1_5 to USE_OLD_VERSION_5_1_5_FORMAT (in the process it seems my script also removed all white spaces at the end of lines, if any) - added support for ROLAND_SYLVAIN simulations
     bd213f2 Merge pull request #53 from komatits/devel
     1d38110 cosmetic changes
     b6ad89b Merge pull request #54 from komatits/devel
     f0ab85a added constant SECONDS_PER_HOUR = 3600.d0
     2c74a0d Merge pull request #55 from komatits/devel
     a7e8590 added doc/Melchior_1991_about_ellipticity_see_in_particular_page77.pdf and doc/map_projections_Geomatics_Guidance_Note_number7_part2_June2013_geographic_geocentric_conversion_pages_94_and_95.pdf
     2385088 Merge pull request #56 from komatits/devel
     719b654 clarified the definition of the reference ellipsoid and left some notes about this in the users manual and in the conversion routine
     124baaa Merge pull request #57 from komatits/devel
     fe1cc1c added a comment about Radau's approximation of Clairaut's equation for first-order terms of ellipticity.
     6079475 Merge pull request #58 from komatits/devel
     253b728 Fix off-by-one in regular layer count.
     c4704bc Fix calculation of regular grid point order.
     638b0ef fixed a significant bug in the calculation of the total volume of the mesh: some central cube elements were counted several times because IFLAG_IN_FICTITIOUS_CUBE elements were not excluded. This volume is computed in the mesher for information purposes only and thus seismograms were not affected.
     e27d871 Merge pull request #59 from komatits/devel
     32686e3 Fix allocation of regular kernel arrays.
     163240c simpler implementation of volume and area calculations in the mesher (merged two routines)
     811ae11 Merge pull request #60 from komatits/devel
     672b5e6 Use specfem modules to reduce subroutine arguments.
     eeeeb36 Round chunk_map output to the nearest EPS.
     433edf7 Use addressing to find regular grid slices.
     6cea702 Save some memory on addressing array.
     fedf291 Merge pull request #61 from QuLogic/regular-kernel-grid
     2f0c52e Fix some small typos.
     2878904 Merge pull request #62 from QuLogic/typos
     413d5c6 renamed my new gatherv_all_cr_single_prec() to gatherv_all_r() to be consistent with Daniel Peter's notations
     a583c06 Merge pull request #63 from komatits/devel
     9e5dcc4 added Roland_Sylvain integrals; also fixed a few typos in comments
     5fb4808 Merge pull request #64 from komatits/devel
     9f01b3a removed accented letters: we prefer to keep using standard ASCII for the source code
     39f00c5 Merge pull request #65 from komatits/devel
     cb1e8f4 fixed physical units of Roland_Sylvain integrals
     7cb4737 Merge pull request #66 from komatits/devel
     e347ecc faster way of computing the Roland_Sylvain integrals by pre-computing many common terms
     2b70a18 Merge pull request #67 from komatits/devel
     5babcb0 Add links to submodules in readme.
     eb6066e Change to Markdown so GitHub linkifies stuff.
     e2f2928 Section-ify readme file.
     40bcfdd Merge pull request #68 from QuLogic/readme
     754300e Update README.md
     c0bc5ba Merge remote-tracking branch 'origin/devel'
     170e5f7 Update submodules in master