[cig-commits] [commit] master's head updated: Merge branch 'baagaard/feature-progress-monitor' (89ed9c9)

[cig_noreply at geodynamics.org]

Repository : https://github.com/geodynamics/pylith

Branch 'master' now includes:

     03c29a0 Trivial code cleanup of test code.
     01c0629 Add 2-D fault intersection full-scale test.
     87cc035 Added 3-D fault intersection full-scale test.
     cf6c6b6 Trivial code cleanup in test.
     2c89b41 Added initial version of 2D gravity example
     bcb96d1 Added README.
     ef23bb5 Delete log files I didn't mean to include.
     311f1fb Removed spatial database files that are created by python script.
     9973088 Finished setting up gravity example. Need to have Brad and Matt test it.
     4aa67e7 Removed obsolete contour meshing example (covered by 3-D subduction).
     b1df679 Improve subduction meshing example. Make Trelis compatible.
     3fb8651 Fixed typo.
     2c5c061 Updated meshing README.
     c5a9dbe Small improvements to 2-D gravity example.
     256700b Updated geometry journal file based on updated surfaces (change in ids).
     e006604 Merge branch 'baagaard/fix-meshing-examples-trelis' into next
     4755072 Merge branch 'williams/add-examples-grav2d' into next
     216c270 Started work on debugging examples.
     a533b74 Updated for change in ids (works for CUBIT 14.1 and Trelis 15.0).
     de19572 Fixed meshing for examples/2d/greensfns/reverse. No object ids used.
     a3f0b9d Updated to remove vertices while creating splines.
     6075897 Switched to IDless journal files. Minor cleanup.
     70cf4b4 Cleanup of APREPRO lines.
     c88c85a Cleanup of APREPRO lines.
     cc342c0 Cleanup of APREPRO lines.
     62e1b35 Increment version number to 2.0.1. Added release notes.
     6531fb1 Remove old directory from Makefile.
     346e2da Improve error message for fault quadrature check.
     4c242aa Merge branch 'baagaard/fix-meshing-examples-trelis'
     652e97a Merge branch 'baagaard/add-release-2.0.1'
     7d225ab Added files for examples/debugging.
     8c20934 Cleanup some error messages.
     23b1ff7 Introduce some errors into spatialdb file.
     33663fc Small adjustments to errors.
     7d4a694 Add more errors into mat_elastic and step02.
     3426804 Finished setting up files with error and correct files. Moved correct files to correct directory.
     a93bb2f Accidentally removed errors.
     e1d7948 Added files to Makefile.
     11d0883 Added files to Makefile.
     37686d9 Fixed typo in comment.
     d58a6b5 Updated spline creation for compatibility with Trelis.
     e4f9c02 Update configure.ac for obsolete directories (removed).
     6753495 Solver: Remove DM from Vecs used in MatNullSpace - This avoids a reference cycle
     2bae138 Field: Setup DM field objects
     697fa11 Added debugging to examples Makefile. Updated filenames in debugging Makefile.
     875d67f Added README to examples/debugging.
     5fde715 Incremented version number and updated README.
     9459c95 Merge branch 'baagaard/fix-meshing-examples-trelis'
     c54ad80 Merge commit '2bae13870c3a01dd4a1acceca3c441956f78eb01'
     3dde946 Merge branch 'baagaard/add-missing-files-dist'
     ab8c3c6 Merge branch 'baagaard/add-examples-debugging'
     58902f3 Merge branch 'baagaard/add-release-2.0.2'
     4455d45 Merge branch 'master' into baagaard/fix-faults-intersect
     6063f9b Fixed test data for fault intersection full-scale tests.
     3b15793 Check to make sure label for fault edge is defined.
     a69e27d Added hex8 fault intersection full-scale test.
     a606bd8 Small code cleanup.
     229a1df Improved some error messages.
     c8e4d80 Merge branch 'baagaard/fix-error-messages'
     3dcf71c Added test case for embedded fault and initial state for friction.
     4592ba1 Code formatting cleanup.
     954bfb2 Fixed bug in overzealous size checking.
     8fb67f5 Turn on field split, remove marking of buried edges.
     c51f9ba Fault: Replace logic using clamped label with logic using _cohesiveVertices[] - This makes all parts agree on fault definition
     78ec935 Upgrade to new PETSc release
     e0cb277 Finished embedded fault test with friction and field split w/custom fault PC.
     a0be517 Merge branch 'baagaard/fix-friction-initial-state'
     87981e9 Updated Makfiles to eliminate warnings.
     692eaf2 Remove obsolete mesh generation test files.
     a53c18e Update pytest files for automake 1.13.
     87db39c Add local target for verbose test running.
     da4bbde More cleanup for changes in automake test target.
     79f86a6 Create module.am for stuff common to all Python modules.
     cdf4794 Add checks for Python header file and shared library.
     bb0e108 Merge branch 'baagaard/update-autoconf'
     cd234e9 Increment to v2.0.3.
     f6e8e40 Updated to v2.0.3.
     a31c29b Updated CHANGES to point to Git repo commits.
     c42ce77 Merge branch 'baagaard/add-release-2.0.3'
     d5e21df Fix error in making source distribution.
     c73d23a Merge branch 'baagaard/update-autoconf'
     9314577 Small fixes to release announcement.
     09adf84 Merge branch 'baagaard/add-release-2.0.3'
     eca13b5 Change DMPlexGet/SetDImension() to DMGet/SetDimension()
     9bcda6d Update PETSc version check
     984ba78 Another update for PETSc 3.5.1 in libtests.
     af6c1ba Merge branch 'knepley/upgrade-petsc-3.5'
     b39bd8d Configure: Upgrade to PETSc 3.5.2
     4d71303 Small fix for running tests with latest automake.
     5a51774 Merge branch 'knepley/upgrade-petsc-3.5'
     b59a515 Modified manual, code, and unit tests for error in Drucker-Prager elastoplasticity. We were missing the initial pressure term. I haven't tested yet.
     62c07b9 Minor fix in Drucker-Prager equations (does not affect results).
     892ada1 Distribution: Fixed interface to DMPlexDistribute()
     ced0083 Fixes to comments.
     ed3a02b Updated Distributor Python object for removal of partitioner parameter.
     d17e854 Update Distributor for moving partitioner to PETSc setting.
     d22e999 Fixed partitioner settings.
     1fe2ffc Use PETSc partitioner setting.
     cb5413b Merge branch 'knepley/upgrade-petsc-master'
     1e3789d More updates for partitioner setting to PETSc.
     de541aa Merge branch 'knepley/upgrade-petsc-master'
     0382191 Create Lagrange DM to get global section for fault preconditioner.
     e4e20c9 Fix small compile bug.
     bb60ed8 Add DM for subfields in Field. Refactor Field metadata.
     c0c0725 Fix bug. Remove superfluous DMDestroy().
     1b880b2 Cleanup by using Field::globalSection().
     f339645 Merge branch 'baagaard/fix-custom-faultpc'
     73e9867 Merge branch 'master' into baagaard/fix-faults-intersect
     6dae00d Small fix for getting edge nodeset in parallel.
     0dd37c1 Add missing files for fault interesection test to Makefile.
     c242bb7 Merge branch 'baagaard/fix-faults-intersect'
     543c146 Started work on progress monitor.
     1e9f9bb Added progress monitor to TimeDependent.
     bccef00 Added unit test for ProgressMonitor.
     6932460 Refactor ProgressMonitor into ProgressMonitor, ProgressMonitorTime, and ProgressMonitorStep.
     23d7f12 Merge branch 'baagaard/feature-progress-monitor'
     1a378b9 Added documentation for progress monitors.
     89ed9c9 Merge branch 'baagaard/feature-progress-monitor'