[cig-commits] [commit] devel, master: Merge remote-tracking branch 'origin/devel' (c0bc5ba)
cig_noreply at geodynamics.org
cig_noreply at geodynamics.org
Thu Nov 6 08:13:30 PST 2014
Repository : https://github.com/geodynamics/specfem3d_globe
On branches: devel,master
Link : https://github.com/geodynamics/specfem3d_globe/compare/bc58e579b3b0838a0968725a076f5904845437ca...be63f20cbb6f462104e949894dbe205d2398cd7f
>---------------------------------------------------------------
commit c0bc5bad044fed4060ec5352025ec7db7cea6e33
Merge: 5e338b5 754300e
Author: Eric Heien <github at heien.org>
Date: Thu May 1 17:14:08 2014 -0700
Merge remote-tracking branch 'origin/devel'
>---------------------------------------------------------------
c0bc5bad044fed4060ec5352025ec7db7cea6e33
DATA | 2 +-
EXAMPLES | 2 +-
Makefile.in | 8 +-
README | 13 -
README.md | 24 +
configure | 22 +-
configure.ac | 8 +-
...ion_of_Clairaut_ellipticity_1953_first_page.pdf | Bin 0 -> 86029 bytes
..._about_ellipticity_see_in_particular_page77.pdf | Bin 0 -> 1927020 bytes
doc/USER_MANUAL/bibliography.bib | 30986 ++++++++--------
.../figures/logo_fondation_Del_Duca.png | Bin 0 -> 13169 bytes
doc/USER_MANUAL/figures/specfem_3d_globe-cover.ai | 36080 ++++++++++---------
doc/USER_MANUAL/figures/specfem_3d_globe-cover.pdf | 512 +-
doc/USER_MANUAL/manual_SPECFEM3D_GLOBE.pdf | Bin 24321997 -> 24343297 bytes
doc/USER_MANUAL/manual_SPECFEM3D_GLOBE.tex | 69 +-
doc/USER_MANUAL/specfem_3d_globe-cover_small.jpg | Bin 48909 -> 48935 bytes
...aphic_geocentric_conversion_pages_94_and_95.pdf | Bin 0 -> 2035421 bytes
flags.guess | 28 +-
replace_use_mpi_with_include_mpif_dot_h.pl | 8 +-
setup/config.fh.in | 27 +
setup/constants.h.in | 96 +-
setup/precision.h.in | 8 +-
src/auxiliaries/combine_AVS_DX.f90 | 8 +-
src/auxiliaries/combine_paraview_strain_data.f90 | 10 +-
src/auxiliaries/combine_surf_data.f90 | 18 +-
src/auxiliaries/combine_vol_data.F90 | 56 +-
src/auxiliaries/combine_vol_data_adios_impl.f90 | 34 +-
src/auxiliaries/combine_vol_data_shared.f90 | 29 +-
src/auxiliaries/convolve_source_timefunction.f90 | 26 +-
src/auxiliaries/create_movie_AVS_DX.f90 | 38 +-
src/auxiliaries/create_movie_GMT_global.f90 | 18 +-
src/auxiliaries/rules.mk | 52 +-
.../compute_optimized_dumping_undo_att.f90 | 8 +-
src/compute_optimized_dumping_undo_att/rules.mk | 14 +-
src/create_header_file/create_header_file.f90 | 8 +-
src/create_header_file/rules.mk | 12 +-
src/cuda/assemble_MPI_scalar_cuda.cu | 23 +-
src/cuda/assemble_MPI_vector_cuda.cu | 27 +-
src/cuda/check_fields_cuda.cu | 15 +-
src/cuda/compute_add_sources_elastic_cuda.cu | 15 +-
src/cuda/compute_coupling_cuda.cu | 21 +-
src/cuda/compute_forces_crust_mantle_cuda.cu | 15 +-
src/cuda/compute_forces_inner_core_cuda.cu | 15 +-
src/cuda/compute_forces_outer_core_cuda.cu | 15 +-
src/cuda/compute_kernels_cuda.cu | 13 +-
src/cuda/compute_stacey_acoustic_cuda.cu | 17 +-
src/cuda/compute_stacey_elastic_cuda.cu | 21 +-
src/cuda/initialize_cuda.cu | 21 +-
src/cuda/mesh_constants_cuda.h | 14 +-
src/cuda/noise_tomography_cuda.cu | 17 +-
src/cuda/prepare_mesh_constants_cuda.cu | 51 +-
src/cuda/rules.mk | 8 +-
src/cuda/save_and_compare_cpu_vs_gpu.c | 21 +-
src/cuda/specfem3D_gpu_cuda_method_stubs.c | 16 +-
src/cuda/transfer_fields_cuda.cu | 13 +-
src/cuda/update_displacement_cuda.cu | 13 +-
src/cuda/write_seismograms_cuda.cu | 19 +-
src/meshfem3D/add_missing_nodes.f90 | 8 +-
src/meshfem3D/add_topography.f90 | 12 +-
src/meshfem3D/add_topography_410_650.f90 | 22 +-
src/meshfem3D/add_topography_cmb.f90 | 8 +-
src/meshfem3D/add_topography_icb.f90 | 8 +-
src/meshfem3D/assemble_MPI_central_cube_mesh.f90 | 10 +-
src/meshfem3D/assemble_MPI_scalar_mesh.f90 | 8 +-
src/meshfem3D/assemble_MPI_vector_mesh.f90 | 8 +-
src/meshfem3D/calc_jacobian.f90 | 38 +-
src/meshfem3D/compute_area.f90 | 97 -
src/meshfem3D/compute_coordinates_grid.f90 | 8 +-
src/meshfem3D/compute_element_properties.f90 | 30 +-
src/meshfem3D/compute_volumes.f90 | 111 -
src/meshfem3D/compute_volumes_and_areas.f90 | 439 +
src/meshfem3D/create_MPI_interfaces.f90 | 16 +-
src/meshfem3D/create_addressing.f90 | 8 +-
src/meshfem3D/create_central_cube.f90 | 12 +-
src/meshfem3D/create_central_cube_buffers.f90 | 10 +-
src/meshfem3D/create_chunk_buffers.f90 | 18 +-
src/meshfem3D/create_doubling_elements.f90 | 8 +-
src/meshfem3D/create_mass_matrices.f90 | 32 +-
src/meshfem3D/create_meshes.f90 | 14 +-
src/meshfem3D/create_regions_mesh.F90 | 108 +-
src/meshfem3D/create_regions_mesh_adios.f90 | 10 +-
src/meshfem3D/create_regular_elements.f90 | 8 +-
src/meshfem3D/define_superbrick.f90 | 8 +-
src/meshfem3D/finalize_mesher.f90 | 81 +-
src/meshfem3D/fix_non_blocking_flags.f90 | 8 +-
src/meshfem3D/get_MPI_1D_buffers.f90 | 8 +-
src/meshfem3D/get_MPI_cutplanes_eta.f90 | 8 +-
src/meshfem3D/get_MPI_cutplanes_xi.f90 | 8 +-
src/meshfem3D/get_MPI_interfaces.f90 | 37 +-
src/meshfem3D/get_absorb.f90 | 16 +-
src/meshfem3D/get_absorb_adios.F90 | 18 +-
src/meshfem3D/get_ellipticity.f90 | 8 +-
src/meshfem3D/get_global.f90 | 24 +-
src/meshfem3D/get_jacobian_boundaries.f90 | 22 +-
src/meshfem3D/get_jacobian_discontinuities.f90 | 12 +-
src/meshfem3D/get_model.f90 | 60 +-
src/meshfem3D/get_perm_color.f90 | 16 +-
src/meshfem3D/get_shape2D.f90 | 8 +-
src/meshfem3D/get_shape3D.f90 | 8 +-
src/meshfem3D/heap_sort.f90 | 10 +-
src/meshfem3D/initialize_layers.f90 | 8 +-
src/meshfem3D/initialize_mesher.f90 | 13 +-
src/meshfem3D/lgndr.f90 | 8 +-
src/meshfem3D/meshfem3D.f90 | 10 +-
src/meshfem3D/meshfem3D_models.f90 | 64 +-
src/meshfem3D/meshfem3D_par.f90 | 18 +-
src/meshfem3D/model_1066a.f90 | 10 +-
src/meshfem3D/model_1dref.f90 | 389 +-
src/meshfem3D/model_ak135.f90 | 8 +-
src/meshfem3D/model_aniso_inner_core.f90 | 10 +-
src/meshfem3D/model_aniso_mantle.f90 | 14 +-
src/meshfem3D/model_atten3D_QRFSI12.f90 | 26 +-
src/meshfem3D/model_attenuation.f90 | 57 +-
src/meshfem3D/model_crust.f90 | 83 +-
src/meshfem3D/model_crust_1_0.f90 | 22 +-
src/meshfem3D/model_crustmaps.f90 | 20 +-
src/meshfem3D/model_epcrust.f90 | 8 +-
src/meshfem3D/model_eucrust.f90 | 12 +-
src/meshfem3D/model_gapp2.f90 | 8 +-
src/meshfem3D/model_gll.f90 | 98 +-
src/meshfem3D/model_gll_adios.F90 | 8 +-
src/meshfem3D/model_heterogen_mantle.f90 | 14 +-
src/meshfem3D/model_iasp91.f90 | 8 +-
src/meshfem3D/model_jp1d.f90 | 10 +-
src/meshfem3D/model_jp3d.f90 | 8 +-
src/meshfem3D/model_ppm.f90 | 36 +-
src/meshfem3D/model_s20rts.f90 | 14 +-
src/meshfem3D/model_s362ani.f90 | 298 +-
src/meshfem3D/model_s40rts.f90 | 14 +-
src/meshfem3D/model_sea1d.f90 | 10 +-
src/meshfem3D/model_sea99_s.f90 | 8 +-
src/meshfem3D/moho_stretching.f90 | 26 +-
src/meshfem3D/rules.mk | 33 +-
src/meshfem3D/save_arrays_solver.f90 | 8 +-
src/meshfem3D/save_arrays_solver_adios.F90 | 106 +-
src/meshfem3D/setup_MPI_interfaces.f90 | 22 +-
src/meshfem3D/setup_color_perm.f90 | 24 +-
src/meshfem3D/setup_counters.f90 | 8 +-
src/meshfem3D/setup_inner_outer.f90 | 8 +-
src/meshfem3D/setup_model.f90 | 8 +-
src/meshfem3D/sort_array_coordinates.f90 | 24 +-
src/meshfem3D/stretching_function.f90 | 8 +-
src/meshfem3D/test_MPI_interfaces.f90 | 34 +-
src/meshfem3D/write_AVS_DX_global_chunks_data.f90 | 8 +-
.../write_AVS_DX_global_chunks_data_adios.f90 | 8 +-
src/meshfem3D/write_AVS_DX_global_data.f90 | 12 +-
src/meshfem3D/write_AVS_DX_global_data_adios.f90 | 10 +-
src/meshfem3D/write_AVS_DX_global_faces_data.f90 | 8 +-
.../write_AVS_DX_global_faces_data_adios.f90 | 8 +-
src/meshfem3D/write_AVS_DX_surface_data.f90 | 8 +-
src/meshfem3D/write_AVS_DX_surface_data_adios.f90 | 8 +-
src/shared/adios_helpers.f90 | 8 +-
src/shared/adios_helpers_definitions.f90 | 58 +-
src/shared/adios_helpers_writers.f90 | 108 +-
src/shared/adios_manager.F90 | 8 +-
src/shared/adios_method_stubs.c | 16 +-
src/shared/asdf_helpers.f90 | 0
src/shared/asdf_helpers_definitions.f90 | 92 +-
src/shared/asdf_helpers_writers.f90 | 24 +-
src/shared/auto_ner.f90 | 16 +-
src/shared/broadcast_computed_parameters.f90 | 8 +-
src/shared/calendar.f90 | 14 +-
src/shared/count_elements.f90 | 8 +-
src/shared/count_number_of_sources.f90 | 8 +-
src/shared/count_points.f90 | 10 +-
src/shared/create_name_database.f90 | 8 +-
src/shared/create_serial_name_database.f90 | 8 +-
src/shared/define_all_layers.f90 | 33 +-
src/shared/euler_angles.f90 | 8 +-
src/shared/exit_mpi.f90 | 8 +-
src/shared/force_ftz.c | 12 +-
src/shared/get_model_parameters.f90 | 14 +-
src/shared/get_timestep_and_layers.f90 | 14 +-
src/shared/get_value_parameters.f90 | 8 +-
src/shared/gll_library.f90 | 8 +-
src/shared/hex_nodes.f90 | 8 +-
src/shared/intgrl.f90 | 16 +-
src/shared/lagrange_poly.f90 | 8 +-
src/shared/make_ellipticity.f90 | 26 +-
src/shared/make_gravity.f90 | 8 +-
src/shared/memory_eval.f90 | 8 +-
src/shared/model_prem.f90 | 12 +-
src/shared/model_topo_bathy.f90 | 10 +-
src/shared/parallel.f90 | 148 +-
src/shared/param_reader.c | 18 +-
src/shared/read_compute_parameters.f90 | 8 +-
src/shared/read_parameter_file.f90 | 12 +-
src/shared/read_value_parameters.f90 | 8 +-
src/shared/reduce.f90 | 8 +-
src/shared/rthetaphi_xyz.f90 | 25 +-
src/shared/rules.mk | 8 +-
src/shared/save_header_file.F90 | 8 +-
src/shared/shared_par.f90 | 12 +-
src/shared/spline_routines.f90 | 8 +-
src/shared/write_VTK_file.f90 | 44 +-
src/shared/write_c_binary.c | 8 +-
src/specfem3D/asdf_data.f90 | 28 +-
src/specfem3D/assemble_MPI_scalar.f90 | 10 +-
src/specfem3D/assemble_MPI_vector.f90 | 8 +-
src/specfem3D/check_stability.f90 | 20 +-
src/specfem3D/comp_source_spectrum.f90 | 8 +-
src/specfem3D/comp_source_time_function.f90 | 12 +-
src/specfem3D/compute_add_sources.f90 | 18 +-
src/specfem3D/compute_adj_source_frechet.f90 | 10 +-
src/specfem3D/compute_arrays_source.f90 | 15 +-
src/specfem3D/compute_boundary_kernel.f90 | 8 +-
src/specfem3D/compute_coupling.f90 | 8 +-
src/specfem3D/compute_element.F90 | 14 +-
src/specfem3D/compute_element_att_memory.F90 | 10 +-
src/specfem3D/compute_element_strain.F90 | 16 +-
.../compute_forces_acoustic_calling_routine.F90 | 56 +-
src/specfem3D/compute_forces_crust_mantle_Dev.F90 | 8 +-
.../compute_forces_crust_mantle_noDev.f90 | 10 +-
src/specfem3D/compute_forces_inner_core_Dev.F90 | 10 +-
src/specfem3D/compute_forces_inner_core_noDev.f90 | 10 +-
src/specfem3D/compute_forces_outer_core_Dev.F90 | 20 +-
src/specfem3D/compute_forces_outer_core_noDev.f90 | 20 +-
...compute_forces_viscoelastic_calling_routine.F90 | 48 +-
src/specfem3D/compute_kernels.F90 | 55 +-
src/specfem3D/compute_seismograms.f90 | 12 +-
src/specfem3D/compute_stacey_crust_mantle.f90 | 20 +-
src/specfem3D/compute_stacey_outer_core.f90 | 12 +-
src/specfem3D/convert_time.f90 | 28 +-
src/specfem3D/define_derivation_matrices.f90 | 8 +-
src/specfem3D/file_io_threads.c | 11 +-
src/specfem3D/finalize_simulation.f90 | 16 +-
src/specfem3D/get_attenuation.f90 | 8 +-
src/specfem3D/get_backazimuth.f90 | 10 +-
src/specfem3D/get_cmt.f90 | 8 +-
src/specfem3D/get_event_info.f90 | 10 +-
src/specfem3D/initialize_simulation.f90 | 20 +-
src/specfem3D/iterate_time.F90 | 41 +-
src/specfem3D/iterate_time_undoatt.F90 | 17 +-
src/specfem3D/locate_receivers.f90 | 17 +-
src/specfem3D/locate_regular_points.f90 | 79 +-
src/specfem3D/locate_sources.f90 | 16 +-
src/specfem3D/multiply_arrays_source.f90 | 10 +-
src/specfem3D/netlib_specfun_erf.f90 | 38 +-
src/specfem3D/noise_tomography.f90 | 18 +-
src/specfem3D/prepare_timerun.f90 | 140 +-
src/specfem3D/read_adjoint_sources.f90 | 15 +-
src/specfem3D/read_arrays_solver.f90 | 8 +-
src/specfem3D/read_arrays_solver_adios.F90 | 12 +-
src/specfem3D/read_attenuation_adios.f90 | 8 +-
src/specfem3D/read_forward_arrays.f90 | 8 +-
src/specfem3D/read_forward_arrays_adios.F90 | 8 +-
src/specfem3D/read_mesh_databases.F90 | 37 +-
src/specfem3D/read_mesh_databases_adios.f90 | 156 +-
src/specfem3D/read_topography_bathymetry.f90 | 8 +-
src/specfem3D/recompute_jacobian.f90 | 14 +-
src/specfem3D/rules.mk | 37 +-
src/specfem3D/save_forward_arrays.f90 | 10 +-
src/specfem3D/save_forward_arrays_adios.F90 | 24 +-
src/specfem3D/save_kernels.f90 | 53 +-
src/specfem3D/save_kernels_adios.F90 | 20 +-
src/specfem3D/save_regular_kernels.f90 | 95 +-
src/specfem3D/setup_GLL_points.f90 | 8 +-
src/specfem3D/setup_sources_receivers.f90 | 46 +-
src/specfem3D/specfem3D.F90 | 10 +-
src/specfem3D/specfem3D_par.F90 | 33 +-
src/specfem3D/update_displacement_LDDRK.f90 | 30 +-
src/specfem3D/update_displacement_Newmark.f90 | 8 +-
src/specfem3D/visual_vtk.cpp | 22 +-
src/specfem3D/visual_vtk_stubs.c | 16 +-
src/specfem3D/write_movie_output.f90 | 10 +-
src/specfem3D/write_movie_surface.f90 | 8 +-
src/specfem3D/write_movie_volume.f90 | 51 +-
src/specfem3D/write_output_ASCII.f90 | 22 +-
src/specfem3D/write_output_ASDF.F90 | 161 +-
src/specfem3D/write_output_SAC.f90 | 12 +-
src/specfem3D/write_seismograms.f90 | 33 +-
src/specfem3D/write_specfem_adios_header.F90 | 34 +-
272 files changed, 38236 insertions(+), 36370 deletions(-)
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