[CIG-LONG] new install

[Matty]

Walter,

Here are the errors:

Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI 
process
See http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html
[matty-ThinkPad-T530:15183] *** Process received signal ***
[matty-ThinkPad-T530:15183] Signal: Segmentation fault (11)
[matty-ThinkPad-T530:15183] Signal code: Address not mapped (1)
[matty-ThinkPad-T530:15183] Failing at address: 0x44000098
[matty-ThinkPad-T530:15183] [ 0] 
/lib/x86_64-linux-gnu/libpthread.so.0(+0xfcb0) [0x2b308c236cb0]
[matty-ThinkPad-T530:15183] [ 1] 
/usr/lib/libmpi.so.0(PMPI_Comm_set_errhandler+0x60) [0x2b308d528ca0]
[matty-ThinkPad-T530:15183] [ 2] ./ex19(PetscInitialize+0x4ed) [0x4c76f1]
[matty-ThinkPad-T530:15183] [ 3] ./ex19(main+0x33) [0x440c0c]
[matty-ThinkPad-T530:15183] [ 4] 
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x2b308daa876d]
[matty-ThinkPad-T530:15183] [ 5] ./ex19() [0x440ad9]
[matty-ThinkPad-T530:15183] *** End of error message ***
--------------------------------------------------------------------------
mpiexec noticed that process rank 0 with PID 15183 on node 
matty-ThinkPad-T530 exited on signal 11 (Segmentation fault).
--------------------------------------------------------------------------
Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2 MPI 
processes
See http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html
[matty-ThinkPad-T530:15188] *** Process received signal ***
[matty-ThinkPad-T530:15188] Signal: Segmentation fault (11)
[matty-ThinkPad-T530:15188] Signal code: Address not mapped (1)
[matty-ThinkPad-T530:15188] Failing at address: 0x44000098
[matty-ThinkPad-T530:15189] *** Process received signal ***
[matty-ThinkPad-T530:15189] Signal: Segmentation fault (11)
[matty-ThinkPad-T530:15189] Signal code: Address not mapped (1)
[matty-ThinkPad-T530:15189] Failing at address: 0x44000098
[matty-ThinkPad-T530:15188] [ 0] 
/lib/x86_64-linux-gnu/libpthread.so.0(+0xfcb0) [0x2b2b20a38cb0]
[matty-ThinkPad-T530:15188] [ 1] 
/usr/lib/libmpi.so.0(PMPI_Comm_set_errhandler+0x60) [0x2b2b21d2aca0]
[matty-ThinkPad-T530:15188] [ 2] ./ex19(PetscInitialize+0x4ed) [0x4c76f1]
[matty-ThinkPad-T530:15188] [ 3] ./ex19(main+0x33) [0x440c0c]
[matty-ThinkPad-T530:15188] [ 4] 
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x2b2b222aa76d]
[matty-ThinkPad-T530:15188] [ 5] ./ex19() [0x440ad9]
[matty-ThinkPad-T530:15188] *** End of error message ***
[matty-ThinkPad-T530:15189] [ 0] 
/lib/x86_64-linux-gnu/libpthread.so.0(+0xfcb0) [0x2b5eaf459cb0]
[matty-ThinkPad-T530:15189] [ 1] 
/usr/lib/libmpi.so.0(PMPI_Comm_set_errhandler+0x60) [0x2b5eb074bca0]
[matty-ThinkPad-T530:15189] [ 2] ./ex19(PetscInitialize+0x4ed) [0x4c76f1]
[matty-ThinkPad-T530:15189] [ 3] ./ex19(main+0x33) [0x440c0c]
[matty-ThinkPad-T530:15189] [ 4] 
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x2b5eb0ccb76d]
[matty-ThinkPad-T530:15189] [ 5] ./ex19() [0x440ad9]
[matty-ThinkPad-T530:15189] *** End of error message ***
--------------------------------------------------------------------------
mpiexec noticed that process rank 0 with PID 15188 on node 
matty-ThinkPad-T530 exited on signal 11 (Segmentation fault).
--------------------------------------------------------------------------
Possible error running Fortran example src/snes/examples/tutorials/ex5f 
with 1 MPI process
See http://www.mcs.anl.gov/petsc/petsc-as/documentation/faq.html
[matty-ThinkPad-T530:15253] *** Process received signal ***
[matty-ThinkPad-T530:15253] Signal: Segmentation fault (11)
[matty-ThinkPad-T530:15253] Signal code: Address not mapped (1)
[matty-ThinkPad-T530:15253] Failing at address: 0x44000098
[matty-ThinkPad-T530:15253] [ 0] 
/lib/x86_64-linux-gnu/libpthread.so.0(+0xfcb0) [0x2aad18f5ccb0]
[matty-ThinkPad-T530:15253] [ 1] 
/usr/lib/libmpi.so.0(MPI_Comm_rank+0x5e) [0x2aad1a24e7be]
[matty-ThinkPad-T530:15253] [ 2] ./ex5f(petscinitialize_+0x281) [0x446f80]
[matty-ThinkPad-T530:15253] [ 3] ./ex5f() [0x4456b5]
[matty-ThinkPad-T530:15253] [ 4] ./ex5f(main+0x34) [0x445cf4]
[matty-ThinkPad-T530:15253] [ 5] 
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x2aad1ad1976d]
[matty-ThinkPad-T530:15253] [ 6] ./ex5f() [0x445259]
[matty-ThinkPad-T530:15253] *** End of error message ***
--------------------------------------------------------------------------
mpiexec noticed that process rank 0 with PID 15253 on node 
matty-ThinkPad-T530 exited on signal 11 (Segmentation fault).
--------------------------------------------------------------------------
Completed test examples



Yes, I think that installing lapack-dev through synaptic worked, 
although I am not positive.

Matty


On 02/01/2013 05:01 PM, Walter Landry wrote:
> Matty <matty.mookerjee at sonoma.edu> wrote:
>> I have tried reconfiguring Petsc without mpi but each time I run test
>> make it comes up with errors and then unsurprisingly Gale does not run.
>>
>> I have tried:
>>
>> ./configure --without-x
> What is the error you get when you run "make test" for this configuration?
>
> Also, I take it that using lapack-dev seems to work OK?
>
> Cheers,
> Walter Landry
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