[CIG-LONG] Gale 2.0.1 install problem with PETSc

Sat Jan 26 19:42:25 PST 2013

Walter,

Found a hint on the web and got rid of the undefined gfortran* references.
Added the gfortran path to LIBPATH and RPATH and added 'gfortran' to LIBS.

Still have the undefined LAPACK-calling-BLAS references.

The new config.cfg and scons output files are attached.
Frank

On 1/26/13 3:00 PM, "cig-long-request at geodynamics.org"
<cig-long-request at geodynamics.org> wrote:

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>    1. Re: CIG-LONG Digest, Vol 73, Issue 5 (Morgan, Frank)
>    2. Re: CIG-LONG Digest, Vol 73, Issue 5 (Walter Landry)
> 
> 
> ----------------------------------------------------------------------
> 
> Message: 1
> Date: Fri, 25 Jan 2013 18:23:02 -0500
> From: "Morgan, Frank" <Frank.Morgan at jhuapl.edu>
> Subject: Re: [CIG-LONG] CIG-LONG Digest, Vol 73, Issue 5
> To: "cig-long at geodynamics.org" <cig-long at geodynamics.org>
> Message-ID: <CD287E06.CF30%Frank.Morgan at jhuapl.edu>
> Content-Type: text/plain; charset="us-ascii"
> 
> Thanks Walter - configuring PETSc without X11 got me past the Gale config.
> 
> But I'm getting the same errors on scons as Feng Lin. I configured PETSc
> with:
> --download-f-blas-lapack=/home/morgamf1/Applications/tmp/fblaslapack-3.1.1.t
> ar.gz
> (pointing to the LAPACK package previously downloaded)
> 
> ...and I have libfblas.a, libflapack.a in
> /petsc-3.2-p7/linux-gnu-c-debug/lib/
> 
> Is there possibly a version requirement on the LAPACK/BLAS package Gale
> 2.0.1 needs? Is 3.1.1 maybe the wrong version? Looks like LAPACK routines
> get moved around on occasion...
> 
> Frank
> 
> 
> On 1/25/13 7:49 AM, "cig-long-request at geodynamics.org"
> <cig-long-request at geodynamics.org> wrote:
> 
>> Send CIG-LONG mailing list submissions to
>> cig-long at geodynamics.org
>> 
>> To subscribe or unsubscribe via the World Wide Web, visit
>> http://geodynamics.org/cgi-bin/mailman/listinfo/cig-long
>> or, via email, send a message with subject or body 'help' to
>> cig-long-request at geodynamics.org
>> 
>> You can reach the person managing the list at
>> cig-long-owner at geodynamics.org
>> 
>> When replying, please edit your Subject line so it is more specific
>> than "Re: Contents of CIG-LONG digest..."
>> 
>> 
>> Today's Topics:
>> 
>>    1. Re: Gale 2.0.1 install problem with PETSc libraries
>>       (Walter Landry)
>>    2. Re: Gale 2.0.1 install problem with PETSc libraries (Feng Lin)
>> 
>> 
>> ----------------------------------------------------------------------
>> 
>> Message: 1
>> Date: Thu, 24 Jan 2013 14:41:41 -0800 (PST)
>> From: Walter Landry <wlandry at caltech.edu>
>> Subject: Re: [CIG-LONG] Gale 2.0.1 install problem with PETSc
>> libraries
>> To: cig-long at geodynamics.org
>> Message-ID: <20130124.144141.967880878673273828.wlandry at caltech.edu>
>> Content-Type: Text/Plain; charset=us-ascii
>> 
>> feng lin <rimbong at gmail.com> wrote:
>>> I had the same problem with your first and second time. And I haven't fixed
>>> it yet.  Even I config and make with flag --with-single-library=1, I still
>>> keep getting the message: Static missing:
>>>   ['petscsnes', 'petscksp', 'petscdm', 'petscmat', 'petscvec']
>>>   Shared missing: ['petscsnes', 'petscksp', 'petscdm', 'petscmat',
>>> 'petscvec', 'petsc']
>>>   Looked in: ['/home/feng/Gale2.0.1/petsc-3.2-p7/lib',
>>> '/home/feng/Gale2.0.1/petsc-3.2-p7/arch-linux2-c-debug/lib']
>>> 
>>> 
>>> 
>>> Any one can tell me the possible reason?
>> 
>> You have the same issue.  You need to build Petsc without X11 support.
>> 
>> Cheers,
>> Walter Landry
>> 
>> 
>> ------------------------------
>> 
>> Message: 2
>> Date: Fri, 25 Jan 2013 06:48:50 -0600
>> From: Feng Lin <rimbong at gmail.com>
>> Subject: Re: [CIG-LONG] Gale 2.0.1 install problem with PETSc
>> libraries
>> To: cig-long at geodynamics.org
>> Message-ID: <008F74E7-DC55-4FD8-848F-254F66394CED at gmail.com>
>> Content-Type: text/plain; charset="us-ascii"
>> 
>> Walter, 
>> 
>> I've done with configure, but I couldn't install by using ./scons
>> 
>> there's error coming out.
>> It looks like : 
>> 
>> build/lib/libUnderworld.a(REP_Algorithm.os): In function
>> `_REP_Algorithm_Solver(double**, double*, int)':
>> /home/feng/Gale2.0.1/Gale-2_0_1/Underworld/Utils/src/REP_Algorithm.cxx:523:
>> undefined reference to `dgesv_'
>> 
/home/feng/Gale2.0.1/petsc-3.2-p7/arch-linux2-c-debug/lib/libpetsc.a(bvec2.o)>>
:
>> In function `VecSwap_Seq':
>> /home/feng/Gale2.0.1/petsc-3.2-p7/src/vec/vec/impls/seq/bvec2.c:219:
>> undefined
>> reference to `dswap_'
>> 
>> 
>> file attached is the log file of ./scons
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>> 
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>> 
>> Thanks!
>> 
>> Regards,
>> 
>> 
>> Feng Lin
>> 
>> On Jan 24, 2013, at 4:41 PM, Walter Landry <wlandry at caltech.edu> wrote:
>> 
>>> feng lin <rimbong at gmail.com> wrote:
>>>> I had the same problem with your first and second time. And I haven't fixed
>>>> it yet.  Even I config and make with flag --with-single-library=1, I still
>>>> keep getting the message: Static missing:
>>>>  ['petscsnes', 'petscksp', 'petscdm', 'petscmat', 'petscvec']
>>>>  Shared missing: ['petscsnes', 'petscksp', 'petscdm', 'petscmat',
>>>> 'petscvec', 'petsc']
>>>>  Looked in: ['/home/feng/Gale2.0.1/petsc-3.2-p7/lib',
>>>> '/home/feng/Gale2.0.1/petsc-3.2-p7/arch-linux2-c-debug/lib']
>>>> 
>>>> 
>>>> 
>>>> Any one can tell me the possible reason?
>>> 
>>> You have the same issue.  You need to build Petsc without X11 support.
>>> 
>>> Cheers,
>>> Walter Landry
>>> _______________________________________________
>>> CIG-LONG mailing list
>>> CIG-LONG at geodynamics.org
>>> http://geodynamics.org/cgi-bin/mailman/listinfo/cig-long
>> 
>> 
>> ------------------------------
>> 
>> _______________________________________________
>> CIG-LONG mailing list
>> CIG-LONG at geodynamics.org
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>> 
>> End of CIG-LONG Digest, Vol 73, Issue 5
>> ***************************************
> 
> 
> 
> ------------------------------
> 
> Message: 2
> Date: Fri, 25 Jan 2013 19:37:33 -0800 (PST)
> From: Walter Landry <wlandry at caltech.edu>
> Subject: Re: [CIG-LONG] CIG-LONG Digest, Vol 73, Issue 5
> To: cig-long at geodynamics.org
> Message-ID: <20130125.193733.601209235165056426.wlandry at caltech.edu>
> Content-Type: Text/Plain; charset=us-ascii
> 
> "Morgan, Frank" <Frank.Morgan at jhuapl.edu> wrote:
>> Thanks Walter - configuring PETSc without X11 got me past the Gale config.
>> 
>> But I'm getting the same errors on scons as Feng Lin. I configured PETSc
>> with:
>> --download-f-blas-lapack=/home/morgamf1/Applications/tmp/fblaslapack-3.1.1.t
>> ar.gz
>> (pointing to the LAPACK package previously downloaded)
>> 
>> ...and I have libfblas.a, libflapack.a in
>> /petsc-3.2-p7/linux-gnu-c-debug/lib/
> 
> This is good.  In the Gale directory, try modifying "config.cfg" by
> modifying the line with
> 
>   LIBPATH
> 
> to add the directory
> 
>   /petsc-3.2-p7/linux-gnu-c-debug/lib/
> 
> Then change the line with
> 
>   LIBS
> 
> to remove "lapack" and add "flapack" and "fblas".
> 
> Cheers,
> Walter Landry
> 
> 
> ------------------------------
> 
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> End of CIG-LONG Digest, Vol 73, Issue 7
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