[CIG-LONG] new install

[Matty]

Walter,

That definitely seemed to help. I got through the configure stage this time.  It didn't find PETScExt, but I think I recall that that was OK. When I ran scons I get this error:

(this is where the trouble starts)

ar rc build/lib/libboost_system.a build/boost/libs/system/src/error_code.os
ranlib build/lib/libboost_system.a
mpicxx -o build/bin/Gale -Wl,-rpath=/home/matty/Programs/Petsc/petsc-3.2-p7/lib -Wl,-rpath=/home/matty/Programs/Petsc/petsc-3.2-p7/arch-linux2-c-debug/lib -Wl,-rpath=/home/matty/Programs/Gale/gale/build/lib StGermain/src/main.o build/StGermain/stg_static_modules.o -L/home/matty/Programs/Petsc/petsc-3.2-p7/lib -L/home/matty/Programs/Petsc/petsc-3.2-p7/arch-linux2-c-debug/lib -Lbuild/lib -lUnderworld -lPICellerator -lStgFEM -lStgDomain -lStGermain -lpcu -lmuparserx -ljson_parser -ljson_spirit -lboost_filesystem -lboost_system -lpetsc -lhdf5 -lxml2
build/lib/libUnderworld.a(REP_Algorithm.os): In function `_REP_Algorithm_Solver(double**, double*, int)':
/home/matty/Programs/Gale/gale/Underworld/Utils/src/REP_Algorithm.cxx:523: undefined reference to `dgesv_'
/home/matty/Programs/Petsc/petsc-3.2-p7/arch-linux2-c-debug/lib/libpetsc.a(dense.c.o): In function `MatAXPY_SeqDense':
/home/matty/Programs/Petsc/petsc-3.2-p7/src/mat/impls/dense/seq/dense.c:26: undefined reference to `daxpy_'

(this is the end of that output)

/home/matty/Programs/Petsc/petsc-3.2-p7/arch-linux2-c-debug/lib/libpetsc.a(gs.c.o): 
In function `gs_gop_vec_tree_plus':
/home/matty/Programs/Petsc/petsc-3.2-p7/src/ksp/pc/impls/tfs/gs.c:1386: 
undefined reference to `dcopy_'
/home/matty/Programs/Petsc/petsc-3.2-p7/src/ksp/pc/impls/tfs/gs.c:1401: 
undefined reference to `dcopy_'
collect2: ld returned 1 exit status
scons: *** [build/bin/Gale] Error 1
scons: building terminated because of errors.


Ahhh Petsc...how you hurt me.

Matty


On 01/31/2013 01:03 PM, Walter Landry wrote:
> Matty <matty.mookerjee at sonoma.edu> wrote:
>> Yeah, the lib64 was just the last of the string of combinations that I
>> had tried.
>>
>> Attached are the config.log and config.cfg files for this command:
>>
>>   ./configure.sh --petsc-dir=/home/matty/Programs/Petsc/petsc-3.2-p7
>>   --petsc-arch=arch-linux2-c-debug
> You have the same problem Frank Morgan had.  Reconfigure petsc without X11
>
>    http://www.geodynamics.org/pipermail/cig-long/2013-January/000881.html
>
> Cheers,
> Walter Landry
> _______________________________________________
> CIG-LONG mailing list
> CIG-LONG at geodynamics.org
> http://geodynamics.org/cgi-bin/mailman/listinfo/cig-long
>

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prefix = '/home/matty/Programs/Gale/gale'
build_dir = 'build'
with_debugging = 1
with_warnings = 1
lib_type = 'static'
CXX = 'mpicxx'
CXXFLAGS = []
LINKFLAGS = ['$__RPATH']
with_glucifer = 0
with_hdf5 = 1
with_experimental = False
with_osmesa = 1
with_sdl = 1
with_x11 = 1
with_carbon = 1
with_png = 1
with_jpeg = 1
with_fame = 1
eptiming = 0
with_memory_stats = 0
with_cautious_mode = 0
CPPPATH = ['/usr/include/libxml2', '/home/matty/Programs/Petsc/petsc-3.2-p7/include', '/home/matty/Programs/Petsc/petsc-3.2-p7/arch-linux2-c-debug/include']
LIBPATH = ['/home/matty/Programs/Petsc/petsc-3.2-p7/lib', '/home/matty/Programs/Petsc/petsc-3.2-p7/arch-linux2-c-debug/lib']
RPATH = ['/home/matty/Programs/Petsc/petsc-3.2-p7/lib', '/home/matty/Programs/Petsc/petsc-3.2-p7/arch-linux2-c-debug/lib']
LIBS = ['petsc', 'hdf5', 'xml2']
CPPDEFINES = ['DEBUG', 'HAVE_LIBXML2', 'HAVE_MPI', 'HAVE_HDF5', 'HAVE_PETSC']
CXXFLAGS = []
FRAMEWORKS = []
CCFLAGS = ['-g', '-Wwrite-strings', '-Wno-strict-aliasing', '-Wno-unknown-pragmas', '-g3', '-Wall']
shared_libs = 0
static_libs = 1
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