From hlu1 at memphis.edu  Sun Jan  8 00:54:25 2017
From: hlu1 at memphis.edu (Hao Lu (hlu1))
Date: Sun, 8 Jan 2017 08:54:25 +0000
Subject: [CIG-LONG] gale-1.6.1 error during build
Message-ID: <MWHPR04MB020993890FB156C8741E1D6E87650@MWHPR04MB0209.namprd04.prod.outlook.com>

Hello,


I am a student in UM and I am doing research and I need to use gale-1.6.1, not the newer version.


I have an error during running ./scons:


mpicc -o build/bin/Gale -Wl,-rpath=/home/hlu1/petsc-3.0.0-p12/lib -Wl,-rpath=/home/hlu1/petsc-3.0.0-p12/linux-gnu-c-debug/lib -Wl,-rpath=/home/hlu1/Gale-1_6_1/build/lib StGermain/src/main.o build/StGermain/stg_static_modules.o -L/home/hlu1/petsc-3.0.0-p12/lib -L/home/hlu1/petsc-3.0.0-p12/linux-gnu-c-debug/lib -Lbuild/lib -lUnderworld -lPICellerator -lStgFEM -lStgDomain -lStGermain -lpcu -lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lxml2 -lf2clapack -lf2cblas -lm -lnsl -lrt -ldl

build/lib/libUnderworld.a(REP_Algorithm.os): In function `_REP_Algorithm_Solver':

/home/hlu1/Gale-1_6_1/Underworld/Utils/src/REP_Algorithm.c:524: undefined reference to `dgesv_'

collect2: error: ld returned 1 exit status

scons: *** [build/bin/Gale] Error 1

scons: building terminated because of errors.


I am not sure what to do at this stage. If you would please give me some recommendations.


Best regards,


Hao
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From jbnaliboff at ucdavis.edu  Mon Jan  9 21:22:23 2017
From: jbnaliboff at ucdavis.edu (John Naliboff)
Date: Mon, 9 Jan 2017 21:22:23 -0800
Subject: [CIG-LONG] gale-1.6.1 error during build
In-Reply-To: <MWHPR04MB020993890FB156C8741E1D6E87650@MWHPR04MB0209.namprd04.prod.outlook.com>
References: <MWHPR04MB020993890FB156C8741E1D6E87650@MWHPR04MB0209.namprd04.prod.outlook.com>
Message-ID: <723FDCBF-89A3-424B-85D2-76B89541E6B8@ucdavis.edu>

Hi Hao,

It’s been quite a while since I’ve used GALE and I unfortunately have no idea if their is a quick fix for the error below.  Do note that GALE is no longer officially supported by CIG and we do not recommend using it given that there are a number of better options for long-term tectonic problems.

If you would like, happy to provide a list a codes that may work for the type of problem your are tackling.

Cheers,
John

*************************************************
John Naliboff
Assistant Project Scientist, CIG
Earth & Planetary Sciences Dept., UC Davis



> On Jan 8, 2017, at 12:54 AM, Hao Lu (hlu1) <hlu1 at memphis.edu> wrote:
> 
> Hello,
> 
> I am a student in UM and I am doing research and I need to use gale-1.6.1, not the newer version.
> 
> I have an error during running ./scons:
> 
> mpicc -o build/bin/Gale -Wl,-rpath=/home/hlu1/petsc-3.0.0-p12/lib -Wl,-rpath=/home/hlu1/petsc-3.0.0-p12/linux-gnu-c-debug/lib -Wl,-rpath=/home/hlu1/Gale-1_6_1/build/lib StGermain/src/main.o build/StGermain/stg_static_modules.o -L/home/hlu1/petsc-3.0.0-p12/lib -L/home/hlu1/petsc-3.0.0-p12/linux-gnu-c-debug/lib -Lbuild/lib -lUnderworld -lPICellerator -lStgFEM -lStgDomain -lStGermain -lpcu -lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lxml2 -lf2clapack -lf2cblas -lm -lnsl -lrt -ldl
> build/lib/libUnderworld.a(REP_Algorithm.os): In function `_REP_Algorithm_Solver':
> /home/hlu1/Gale-1_6_1/Underworld/Utils/src/REP_Algorithm.c:524: undefined reference to `dgesv_'
> collect2: error: ld returned 1 exit status
> scons: *** [build/bin/Gale] Error 1
> scons: building terminated because of errors.
> 
> I am not sure what to do at this stage. If you would please give me some recommendations.
> 
> Best regards,
> 
> Hao  
> _______________________________________________
> CIG-LONG mailing list
> CIG-LONG at geodynamics.org <mailto:CIG-LONG at geodynamics.org>
> http://lists.geodynamics.org/cgi-bin/mailman/listinfo/cig-long <http://lists.geodynamics.org/cgi-bin/mailman/listinfo/cig-long>
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From john.mansour at monash.edu  Tue Jan 10 13:25:37 2017
From: john.mansour at monash.edu (John Mansour)
Date: Wed, 11 Jan 2017 08:25:37 +1100
Subject: [CIG-LONG] CIG-LONG Digest, Vol 92, Issue 1
In-Reply-To: <mailman.3.1484078401.31481.cig-long@geodynamics.org>
References: <mailman.3.1484078401.31481.cig-long@geodynamics.org>
Message-ID: <CAKqq0_CyJZnn7df3MFH=xHm3vt7krOXdHhWhxFNiRuLMg1pC6w@mail.gmail.com>

This appears to be an issue with linking to lapack.

If you are not using REP in your simulation, it would probably be easiest
to simply remove the offending call to dgesv.

Though I agree with John, you might be better off looking at more modern
options.

On 11 January 2017 at 07:00, <cig-long-request at geodynamics.org> wrote:

> Send CIG-LONG mailing list submissions to
>         cig-long at geodynamics.org
>
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> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of CIG-LONG digest..."
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>
> Today's Topics:
>
>    1. gale-1.6.1 error during build (Hao Lu (hlu1))
>    2. Re: gale-1.6.1 error during build (John Naliboff)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Sun, 8 Jan 2017 08:54:25 +0000
> From: "Hao Lu (hlu1)" <hlu1 at memphis.edu>
> To: "cig-long at geodynamics.org" <cig-long at geodynamics.org>
> Subject: [CIG-LONG] gale-1.6.1 error during build
> Message-ID:
>         <MWHPR04MB020993890FB156C8741E1D6E87650 at MWHPR04MB0209.
> namprd04.prod.outlook.com>
>
> Content-Type: text/plain; charset="gb2312"
>
> Hello,
>
>
> I am a student in UM and I am doing research and I need to use gale-1.6.1,
> not the newer version.
>
>
> I have an error during running ./scons:
>
>
> mpicc -o build/bin/Gale -Wl,-rpath=/home/hlu1/petsc-3.0.0-p12/lib
> -Wl,-rpath=/home/hlu1/petsc-3.0.0-p12/linux-gnu-c-debug/lib
> -Wl,-rpath=/home/hlu1/Gale-1_6_1/build/lib StGermain/src/main.o
> build/StGermain/stg_static_modules.o -L/home/hlu1/petsc-3.0.0-p12/lib
> -L/home/hlu1/petsc-3.0.0-p12/linux-gnu-c-debug/lib -Lbuild/lib
> -lUnderworld -lPICellerator -lStgFEM -lStgDomain -lStGermain -lpcu
> -lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lxml2
> -lf2clapack -lf2cblas -lm -lnsl -lrt -ldl
>
> build/lib/libUnderworld.a(REP_Algorithm.os): In function
> `_REP_Algorithm_Solver':
>
> /home/hlu1/Gale-1_6_1/Underworld/Utils/src/REP_Algorithm.c:524: undefined
> reference to `dgesv_'
>
> collect2: error: ld returned 1 exit status
>
> scons: *** [build/bin/Gale] Error 1
>
> scons: building terminated because of errors.
>
>
> I am not sure what to do at this stage. If you would please give me some
> recommendations.
>
>
> Best regards,
>
>
> Hao
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>
> ------------------------------
>
> Message: 2
> Date: Mon, 9 Jan 2017 21:22:23 -0800
> From: John Naliboff <jbnaliboff at ucdavis.edu>
> To: cig-long at geodynamics.org
> Subject: Re: [CIG-LONG] gale-1.6.1 error during build
> Message-ID: <723FDCBF-89A3-424B-85D2-76B89541E6B8 at ucdavis.edu>
> Content-Type: text/plain; charset="utf-8"
>
> Hi Hao,
>
> It’s been quite a while since I’ve used GALE and I unfortunately have no
> idea if their is a quick fix for the error below.  Do note that GALE is no
> longer officially supported by CIG and we do not recommend using it given
> that there are a number of better options for long-term tectonic problems.
>
> If you would like, happy to provide a list a codes that may work for the
> type of problem your are tackling.
>
> Cheers,
> John
>
> *************************************************
> John Naliboff
> Assistant Project Scientist, CIG
> Earth & Planetary Sciences Dept., UC Davis
>
>
>
> > On Jan 8, 2017, at 12:54 AM, Hao Lu (hlu1) <hlu1 at memphis.edu> wrote:
> >
> > Hello,
> >
> > I am a student in UM and I am doing research and I need to use
> gale-1.6.1, not the newer version.
> >
> > I have an error during running ./scons:
> >
> > mpicc -o build/bin/Gale -Wl,-rpath=/home/hlu1/petsc-3.0.0-p12/lib
> -Wl,-rpath=/home/hlu1/petsc-3.0.0-p12/linux-gnu-c-debug/lib
> -Wl,-rpath=/home/hlu1/Gale-1_6_1/build/lib StGermain/src/main.o
> build/StGermain/stg_static_modules.o -L/home/hlu1/petsc-3.0.0-p12/lib
> -L/home/hlu1/petsc-3.0.0-p12/linux-gnu-c-debug/lib -Lbuild/lib
> -lUnderworld -lPICellerator -lStgFEM -lStgDomain -lStGermain -lpcu
> -lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -lxml2
> -lf2clapack -lf2cblas -lm -lnsl -lrt -ldl
> > build/lib/libUnderworld.a(REP_Algorithm.os): In function
> `_REP_Algorithm_Solver':
> > /home/hlu1/Gale-1_6_1/Underworld/Utils/src/REP_Algorithm.c:524:
> undefined reference to `dgesv_'
> > collect2: error: ld returned 1 exit status
> > scons: *** [build/bin/Gale] Error 1
> > scons: building terminated because of errors.
> >
> > I am not sure what to do at this stage. If you would please give me some
> recommendations.
> >
> > Best regards,
> >
> > Hao
> > _______________________________________________
> > CIG-LONG mailing list
> > CIG-LONG at geodynamics.org <mailto:CIG-LONG at geodynamics.org>
> > http://lists.geodynamics.org/cgi-bin/mailman/listinfo/cig-long <
> http://lists.geodynamics.org/cgi-bin/mailman/listinfo/cig-long>
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>
> ------------------------------
>
> Subject: Digest Footer
>
> _______________________________________________
> CIG-LONG mailing list
> CIG-LONG at geodynamics.org
> http://lists.geodynamics.org/cgi-bin/mailman/listinfo/cig-long
>
> ------------------------------
>
> End of CIG-LONG Digest, Vol 92, Issue 1
> ***************************************
>
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From hlu1 at memphis.edu  Thu Jan 12 11:29:25 2017
From: hlu1 at memphis.edu (Hao Lu (hlu1))
Date: Thu, 12 Jan 2017 19:29:25 +0000
Subject: [CIG-LONG] Error when switching tag to gale 1.6.1
Message-ID: <MWHPR04MB0209CC78BB83F7E2FD7A8B2087790@MWHPR04MB0209.namprd04.prod.outlook.com>

Hello,


Hope this email finds you well.


I am a Ph.D. student from the University of Memphis and I am currently working with Gale. For my research, I'll have to stick to version 1.6.1 and after I cloned the whole folder on my Linux machine I used the command "git checkout 1.6.1". After this step, I should end up with version 1.6.1. However, when I was trying to configure it, a folder "config" seemed was missing. Would you help me to fix this problem, please?


Best,


Hao
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From jbnaliboff at ucdavis.edu  Fri Jan 13 11:07:13 2017
From: jbnaliboff at ucdavis.edu (John Naliboff)
Date: Fri, 13 Jan 2017 11:07:13 -0800
Subject: [CIG-LONG] Error when switching tag to gale 1.6.1
In-Reply-To: <MWHPR04MB0209CC78BB83F7E2FD7A8B2087790@MWHPR04MB0209.namprd04.prod.outlook.com>
References: <MWHPR04MB0209CC78BB83F7E2FD7A8B2087790@MWHPR04MB0209.namprd04.prod.outlook.com>
Message-ID: <edc8f8eb-2a0a-d387-d80d-e3748a045531@ucdavis.edu>

Hi Hao,

I'm not sure why the config folder is not present.  Here is a link from 
the CIG website to the full source code for 1.6.1: 
https://geodynamics.org/cig/software/gale/Gale-1_6_1.tgz

Again, do note that this was released in 2010 and GALE is no longer 
officially supported.  Given the age of this release, the required 
dependency versions may quite outdated as well (i.e. PETSc) and this 
could lead to additional issues.

As was mentioned in previous emails, there are likely much better 
options for the processes you are examining.  Underworld2 should have 
all the functionality of GALE 1.6.1, with more stable elements and a 
bunch of other new and improved features.  In addition, this (and other 
codes) have a very active user base, which is not the case with GALE.  I 
_*STRONGLY*_*__* suggest looking into using another code.  Happy to help 
pinpoint what other code would be best suited for your purposes, but 
this is about the extent of help we can provide with GALE.

Cheers,
John

*************************************************
John Naliboff
Assistant Project Scientist, CIG
Earth & Planetary Sciences Dept., UC Davis

On 01/12/2017 11:29 AM, Hao Lu (hlu1) wrote:
>
> Hello,
>
>
> Hope this email finds you well.
>
>
> I am a Ph.D. student from the University of Memphis and I am currently 
> working with Gale. For my research, I'll have to stick to version 
> 1.6.1 and after I cloned the whole folder on my Linux machine I used 
> the command "git checkout 1.6.1". After this step, I should end up 
> with version 1.6.1. However, when I was trying to configure it, a 
> folder "config" seemed was missing. Would you help me to fix this 
> problem, please?
>
>
> Best,
>
>
> Hao
>
>
>
> _______________________________________________
> CIG-LONG mailing list
> CIG-LONG at geodynamics.org
> http://lists.geodynamics.org/cgi-bin/mailman/listinfo/cig-long

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From goyes.yesid at gmail.com  Fri Jan 13 01:22:26 2017
From: goyes.yesid at gmail.com (Yesid Goyes)
Date: Fri, 13 Jan 2017 14:22:26 +0500
Subject: [CIG-LONG] plasti RESULTS
Message-ID: <CALDgJAT8tj9ueaVHqUPDeEOxMLkx95=2Sn8yPRnwZTgu2SJT-A@mail.gmail.com>

Hello, I am using the CODE plasti, Now I have the results, but is very
confuse plot them, because some of them have difference size , can you send
me some tutorial or write about how I can plot the results.

thanks.
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From jbnaliboff at ucdavis.edu  Tue Jan 17 11:00:12 2017
From: jbnaliboff at ucdavis.edu (John Naliboff)
Date: Tue, 17 Jan 2017 11:00:12 -0800
Subject: [CIG-LONG] plasti RESULTS
In-Reply-To: <CALDgJAT8tj9ueaVHqUPDeEOxMLkx95=2Sn8yPRnwZTgu2SJT-A@mail.gmail.com>
References: <CALDgJAT8tj9ueaVHqUPDeEOxMLkx95=2Sn8yPRnwZTgu2SJT-A@mail.gmail.com>
Message-ID: <a662b214-5729-ec0b-4fbe-3f588523c7db@ucdavis.edu>

Hi Yesid,

 From looking at the PLASTI source code, it seems everything is being 
output in a standard ASCII data format.  I suggest using GMT 
(http://gmt.soest.hawaii.edu/) to plot the data.  The learning curve is 
a bit steep, but the code is well documented and has countless examples.

However, If I recall correctly many of the papers using PLASTI (and 
Sopale) using a different plotting package than GMT.  I don't know it's 
name off the top of my head, but perhaps someone else will.

Cheers,
John

*************************************************
John Naliboff
Assistant Project Scientist, CIG
Earth & Planetary Sciences Dept., UC Davis

On 01/13/2017 01:22 AM, Yesid Goyes wrote:
> Hello, I am using the CODE plasti, Now I have the results, but is very 
> confuse plot them, because some of them have difference size , can you 
> send me some tutorial or write about how I can plot the results.
>
> thanks.
>
>
> _______________________________________________
> CIG-LONG mailing list
> CIG-LONG at geodynamics.org
> http://lists.geodynamics.org/cgi-bin/mailman/listinfo/cig-long

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