[CIG-MC] Problem downloading python dependencies
Leif Strand
leif at geodynamics.org
Mon Feb 2 12:30:12 PST 2009
Scott,
It looks like your CC and CXX environment variables are set to 'icc':
CC='icc'
CXX='icc'
This indicates to the 'configure' script that you want to use 'icc' as
your compiler. But, it can't find the 'icc' command:
unable to execute icc: No such file or directory
error: Setup script exited with error: command 'icc' failed with exit
status 1
Try editing your PATH so that the 'icc' command can be found:
export PATH=/usr/local/pkg/icc/icc-8.1.038/bin:$PATH
which icc
./configure
--Leif
Scott Burdick wrote:
> I'm a graduate student trying to install the latest version of CitcomS. The
> configuration always hangs up while installing the python dependencies, and it
> looks like it can't find the correct files during the setup of Cheetah. What
> could the problem be here? I have attached the log file.
>
> Thanks,
> Scott Burdick
>
>
> ------------------------------------------------------------------------
>
> This file contains any messages produced by compilers while
> running configure, to aid debugging if configure makes a mistake.
>
> It was created by CitcomS configure 3.0.3, which was
> generated by GNU Autoconf 2.61. Invocation command line was
>
> $ configure
>
> ## --------- ##
> ## Platform. ##
> ## --------- ##
>
> hostname = geo
> uname -m = i686
> uname -r = 2.6.22.2-42.fc6
> uname -s = Linux
> uname -v = #1 SMP Wed Aug 15 11:32:12 EDT 2007
>
> /usr/bin/uname -p = unknown
> /bin/uname -X = unknown
>
> /bin/arch = i686
> /usr/bin/arch -k = unknown
> /usr/convex/getsysinfo = unknown
> /usr/bin/hostinfo = unknown
> /bin/machine = unknown
> /usr/bin/oslevel = unknown
> /bin/universe = unknown
>
> PATH: .
> PATH: /usr/openwin/bin/xview
> PATH: /usr/openwin/bin
> PATH: /usr/openwin/lib
> PATH: /opt/SUNWspro/bin
> PATH: /home/sburdick
> PATH: /usr/ucb
> PATH: /usr/bin
> PATH: /usr/include
> PATH: /usr/etc
> PATH: /usr/etc/bin
> PATH: /usr/lang
> PATH: /etc
> PATH: /bin
> PATH: /usr/sccs
> PATH: /data18/brad/bin.sun4
> PATH: /usr/local/bin
> PATH: /usr/local
> PATH: /usr/local/matlab/bin
> PATH: /usr/local/matlab.old/bin
>
>
> ## ----------- ##
> ## Core tests. ##
> ## ----------- ##
>
> configure:2023: checking for a BSD-compatible install
> configure:2079: result: /usr/bin/install -c
> configure:2090: checking whether build environment is sane
> configure:2133: result: yes
> configure:2198: checking for gawk
> configure:2214: found /usr/bin/gawk
> configure:2225: result: gawk
> configure:2236: checking whether make sets $(MAKE)
> configure:2257: result: yes
> configure:2535: checking for a Python interpreter with version >= 2.3
> configure:2550: python -c import sys, string # split strings by '.' and convert to numeric. Append some zeros # because we need at least 4 digits for the hex conversion. minver = map(int, string.split('2.3', '.')) + [0, 0, 0] minverhex = 0 for i in xrange(0, 4): minverhex = (minverhex << 8) + minver[i] sys.exit(sys.hexversion < minverhex)
> configure:2553: $? = 0
> configure:2560: result: python
> configure:2568: checking for python
> configure:2586: found /usr/bin/python
> configure:2598: result: /usr/bin/python
> configure:2618: checking for python version
> configure:2625: result: 2.4
> configure:2637: checking for python platform
> configure:2644: result: linux2
> configure:2651: checking for python script directory
> configure:2659: result: ${prefix}/lib/python2.4/site-packages
> configure:2668: checking for python extension module directory
> configure:2676: result: ${exec_prefix}/lib/python2.4/site-packages
> configure:2692: checking python sysconfig
> configure:2773: result: ok
> configure:2826: downloading missing Python dependencies
> configure:2829: /usr/bin/python setup.py install_deps -f /home/sburdick/CitcomS-3.0.3/deps -zmxd /home/sburdick/CitcomS-3.0.3/deps >&5 2>&5
> running install_deps
> Checking .pth file support in /home/sburdick/CitcomS-3.0.3/deps
> /usr/bin/python -E -c pass
> running egg_info
> writing requirements to CitcomS.egg-info/requires.txt
> writing CitcomS.egg-info/PKG-INFO
> writing top-level names to CitcomS.egg-info/top_level.txt
> writing dependency_links to CitcomS.egg-info/dependency_links.txt
> reading manifest file 'CitcomS.egg-info/SOURCES.txt'
> writing manifest file 'CitcomS.egg-info/SOURCES.txt'
> Processing merlin-1.6.egg
> Removing /home/sburdick/CitcomS-3.0.3/deps/merlin-1.6.egg
> Copying merlin-1.6.egg to /home/sburdick/CitcomS-3.0.3/deps
>
> Installed /home/sburdick/CitcomS-3.0.3/deps/merlin-1.6.egg
>
> Because this distribution was installed --multi-version, before you can
> import modules from this package in an application, you will need to
> 'import merlin' and then use a 'require()' call similar to one of
> these examples, in order to select the desired version:
>
> merlin.require("merlin") # latest installed version
> merlin.require("merlin==1.6") # this exact version
> merlin.require("merlin>=1.6") # this version or higher
>
>
> Note also that the installation directory must be on sys.path at runtime for
> this to work. (e.g. by being the application's script directory, by being on
> PYTHONPATH, or by being added to sys.path by your code.)
>
>
> Installed /home/sburdick/CitcomS-3.0.3
>
> Because this distribution was installed --multi-version, before you can
> import modules from this package in an application, you will need to
> 'import merlin' and then use a 'require()' call similar to one of
> these examples, in order to select the desired version:
>
> merlin.require("CitcomS") # latest installed version
> merlin.require("CitcomS==3.0") # this exact version
> merlin.require("CitcomS>=3.0") # this version or higher
>
>
> Note also that the installation directory must be on sys.path at runtime for
> this to work. (e.g. by being the application's script directory, by being on
> PYTHONPATH, or by being added to sys.path by your code.)
>
> Processing dependencies for CitcomS==3.0
> Searching for Cheetah
> Reading http://www.python.org/pypi/Cheetah/
> Reading http://www.python.org/pypi/Cheetah/1.0
> Reading http://www.CheetahTemplate.org/
> Reading http://www.python.org/pypi/Cheetah/2.0.1
> Reading http://geodynamics.org/svn/cig/cs/merlin/branches/v1/pi.html
> Best match: Cheetah 2.0.1
> Downloading http://downloads.sourceforge.net/cheetahtemplate/Cheetah-2.0.1.tar.gz?download
> Processing Cheetah-2.0.1.tar.gz
> Running Cheetah-2.0.1/setup.py -q bdist_egg --dist-dir /tmp/easy_install-p7F5vd/Cheetah-2.0.1/egg-dist-tmp-9agxds
> warning: no files found matching '*.cfg'
> warning: no files found matching 'examples'
> warning: no files found matching 'docs'
> warning: no files found matching 'bin'
> warning: no files found matching '*' under directory 'docs'
> warning: no files found matching '*' under directory 'examples'
> warning: no previously-included files matching '*.pyc' found under directory 'src'
> warning: no previously-included files matching '*~' found under directory 'src'
> warning: no previously-included files matching '*.aux' found under directory 'src'
> warning: no previously-included files matching '*~' found under directory 'docs'
> warning: no previously-included files matching '*.aux' found under directory 'docs'
> unable to execute icc: No such file or directory
> error: Setup script exited with error: command 'icc' failed with exit status 1
> configure:2832: $? = 1
> configure:2837: error: cannot download missing Python dependencies
> See `config.log' for more details.
>
> ## ---------------- ##
> ## Cache variables. ##
> ## ---------------- ##
>
> ac_cv_env_CCC_set=set
> ac_cv_env_CCC_value=icc
> ac_cv_env_CC_set=set
> ac_cv_env_CC_value=icc
> ac_cv_env_CFLAGS_set=set
> ac_cv_env_CFLAGS_value='-I/usr/local/pkg/icc/icc-8.1.038/include -L/usr/local/pkg/icc/icc-8.1.038/lib'
> ac_cv_env_CPPFLAGS_set=
> ac_cv_env_CPPFLAGS_value=
> ac_cv_env_CPP_set=
> ac_cv_env_CPP_value=
> ac_cv_env_CXXCPP_set=
> ac_cv_env_CXXCPP_value=
> ac_cv_env_CXXFLAGS_set=set
> ac_cv_env_CXXFLAGS_value='-I/usr/local/pkg/icc/icc-8.1.038/include -L/usr/local/pkg/icc/icc-8.1.038/lib'
> ac_cv_env_CXX_set=set
> ac_cv_env_CXX_value=icc
> ac_cv_env_LDFLAGS_set=
> ac_cv_env_LDFLAGS_value=
> ac_cv_env_LIBS_set=
> ac_cv_env_LIBS_value=
> ac_cv_env_PHDF5_HOME_set=
> ac_cv_env_PHDF5_HOME_value=
> ac_cv_env_PYTHONPATH_set=
> ac_cv_env_PYTHONPATH_value=
> ac_cv_env_PYTHON_set=
> ac_cv_env_PYTHON_value=
> ac_cv_env_build_alias_set=
> ac_cv_env_build_alias_value=
> ac_cv_env_host_alias_set=
> ac_cv_env_host_alias_value=
> ac_cv_env_target_alias_set=
> ac_cv_env_target_alias_value=
> ac_cv_path_PYTHON=/usr/bin/python
> ac_cv_path_install='/usr/bin/install -c'
> ac_cv_prog_AWK=gawk
> ac_cv_prog_make_make_set=yes
> am_cv_pathless_PYTHON=python
> am_cv_python_platform=linux2
> am_cv_python_pyexecdir='${exec_prefix}/lib/python2.4/site-packages'
> am_cv_python_pythondir='${prefix}/lib/python2.4/site-packages'
> am_cv_python_version=2.4
>
> ## ----------------- ##
> ## Output variables. ##
> ## ----------------- ##
>
> ACLOCAL='${SHELL} /home/sburdick/CitcomS-3.0.3/aux-config/missing --run aclocal-1.9'
> AMDEPBACKSLASH=''
> AMDEP_FALSE=''
> AMDEP_TRUE=''
> AMTAR='${SHELL} /home/sburdick/CitcomS-3.0.3/aux-config/missing --run tar'
> AR=''
> AUTOCONF='${SHELL} /home/sburdick/CitcomS-3.0.3/aux-config/missing --run autoconf'
> AUTOHEADER='${SHELL} /home/sburdick/CitcomS-3.0.3/aux-config/missing --run autoheader'
> AUTOMAKE='${SHELL} /home/sburdick/CitcomS-3.0.3/aux-config/missing --run automake-1.9'
> AWK='gawk'
> CC='icc'
> CCDEPMODE=''
> CFLAGS='-I/usr/local/pkg/icc/icc-8.1.038/include -L/usr/local/pkg/icc/icc-8.1.038/lib'
> COND_EMBEDDING_FALSE='#'
> COND_EMBEDDING_TRUE=''
> COND_EXCHANGER_FALSE=''
> COND_EXCHANGER_TRUE=''
> COND_HDF5_FALSE=''
> COND_HDF5_TRUE=''
> COND_PYRE_FALSE='#'
> COND_PYRE_TRUE=''
> CPP=''
> CPPFLAGS=''
> CXX='icc'
> CXXCPP=''
> CXXDEPMODE=''
> CXXFLAGS='-I/usr/local/pkg/icc/icc-8.1.038/include -L/usr/local/pkg/icc/icc-8.1.038/lib'
> CYGPATH_W='echo'
> DEFS=''
> DEPDIR=''
> ECHO='echo'
> ECHO_C=''
> ECHO_N='-n'
> ECHO_T=''
> EGREP=''
> EXEEXT=''
> GREP=''
> INSTALL_DATA='${INSTALL} -m 644'
> INSTALL_PROGRAM='${INSTALL}'
> INSTALL_SCRIPT='${INSTALL}'
> INSTALL_STRIP_PROGRAM='${SHELL} $(install_sh) -c -s'
> LDFLAGS=''
> LIBOBJS=''
> LIBS=''
> LIBTOOL=''
> LN_S=''
> LTLIBOBJS=''
> MAKEINFO='${SHELL} /home/sburdick/CitcomS-3.0.3/aux-config/missing --run makeinfo'
> OBJEXT=''
> PACKAGE='CitcomS'
> PACKAGE_BUGREPORT='cig-mc at geodynamics.org'
> PACKAGE_NAME='CitcomS'
> PACKAGE_STRING='CitcomS 3.0.3'
> PACKAGE_TARNAME='CitcomS'
> PACKAGE_VERSION='3.0.3'
> PATH_SEPARATOR=':'
> PHDF5_HOME=''
> PYCONFIG=''
> PYTHON='/usr/bin/python'
> PYTHONPATH='/home/sburdick/CitcomS-3.0.3/python:'
> PYTHON_BLDLIBRARY='-L/usr/lib/python2.4/config -lpython2.4'
> PYTHON_EGG_CFLAGS=''
> PYTHON_EGG_CPPFLAGS=''
> PYTHON_EGG_LDFLAGS=''
> PYTHON_EGG_LIBS=''
> PYTHON_EGG_PYXFLAGS=''
> PYTHON_EXEC_PREFIX='${exec_prefix}'
> PYTHON_INCDIR='/usr/include/python2.4'
> PYTHON_LA_LDFLAGS=''
> PYTHON_LDFLAGS=''
> PYTHON_LDLAST=''
> PYTHON_LDLIBRARY='libpython2.4.so'
> PYTHON_LIBDIR='/usr/lib'
> PYTHON_LIBP='/usr/lib/python2.4'
> PYTHON_LIBPL='/usr/lib/python2.4/config'
> PYTHON_LIBS='-lpthread -ldl -lutil'
> PYTHON_LINKFORSHARED='-Xlinker -export-dynamic'
> PYTHON_MODLIBS=''
> PYTHON_PLATFORM='linux2'
> PYTHON_PREFIX='${prefix}'
> PYTHON_SYSLIBS='-lm'
> PYTHON_VERSION='2.4'
> RANLIB=''
> SET_MAKE=''
> SHELL='/bin/sh'
> STRIP=''
> VERSION='3.0.3'
> ac_ct_CC=''
> ac_ct_CXX=''
> am__fastdepCC_FALSE=''
> am__fastdepCC_TRUE=''
> am__fastdepCXX_FALSE=''
> am__fastdepCXX_TRUE=''
> am__include=''
> am__leading_dot='.'
> am__quote=''
> am__tar='${AMTAR} chof - "$$tardir"'
> am__untar='${AMTAR} xf -'
> bindir='${exec_prefix}/bin'
> build=''
> build_alias=''
> build_cpu=''
> build_os=''
> build_vendor=''
> datadir='${datarootdir}'
> datarootdir='${prefix}/share'
> docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
> dvidir='${docdir}'
> exec_prefix='NONE'
> host=''
> host_alias=''
> host_cpu=''
> host_os=''
> host_vendor=''
> htmldir='${docdir}'
> includedir='${prefix}/include'
> infodir='${datarootdir}/info'
> install_sh='/home/sburdick/CitcomS-3.0.3/aux-config/install-sh'
> libdir='${exec_prefix}/lib'
> libexecdir='${exec_prefix}/libexec'
> localedir='${datarootdir}/locale'
> localstatedir='${prefix}/var'
> mandir='${datarootdir}/man'
> mkdir_p='mkdir -p --'
> oldincludedir='/usr/include'
> pdfdir='${docdir}'
> pkgpyexecdir='${pyexecdir}/CitcomS'
> pkgpythondir='${pythondir}/CitcomS'
> pkgsysconfdir=''
> prefix='NONE'
> program_transform_name='s,x,x,'
> psdir='${docdir}'
> pyexecdir='${exec_prefix}/lib/python2.4/site-packages'
> pythondir='${prefix}/lib/python2.4/site-packages'
> sbindir='${exec_prefix}/sbin'
> sharedstatedir='${prefix}/com'
> sysconfdir='${prefix}/etc'
> target_alias=''
>
> ## ----------- ##
> ## confdefs.h. ##
> ## ----------- ##
>
> #define PACKAGE_NAME "CitcomS"
> #define PACKAGE_TARNAME "CitcomS"
> #define PACKAGE_VERSION "3.0.3"
> #define PACKAGE_STRING "CitcomS 3.0.3"
> #define PACKAGE_BUGREPORT "cig-mc at geodynamics.org"
> #define PACKAGE "CitcomS"
> #define VERSION "3.0.3"
>
> configure: exit 1
>
>
>
> ------------------------------------------------------------------------
>
> _______________________________________________
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