[CIG-MC] cookbook 9 problem
CLINT CONRAD
clintc at hawaii.edu
Tue Mar 3 09:10:11 PST 2009
Dear cig-mc help,
I have been trying to run cookbook 9 using the 3.0.3 version of
citcom. I've compiled citcom with the exchanger,
and then type:
citcoms --coupled cookbook9.cfg
and I get the series of output and error messages that I have pasted
below.
It seems that this problem has to do with the exchanger, but I've
compile the exchanger, and when
I run ./configure for citcom, the configuration summary clearly says
that it is compiled with the exchanger:
================ Configuration Summary ================
PYTHON: /share/data/clintc/opt/bin/python
PYTHONPATH: ${prefix}/lib/python2.4/site-packages:${exec_prefix}/
lib/python2.4/site-packages:/share/data/clintc/cig/lib/python2.4/site-
packages
CC: mpicc
CFLAGS: -g -O2
CPPFLAGS: -DUSE_GZDIR
CXX: mpicxx
CXXFLAGS: -g -O2
LDFLAGS: -lz
with-pyre: yes
with-exchanger: yes
with-hdf5: no
Can you help me figure out what is the problem when I try to run
cookbook 9? I've pasted the output and error messages from my attempt
at cookbook9 below.
Thanks very much for your help!
Clint
---------------------------------------------
Clint Conrad Assistant Professor
Dept. Geology & Geophysics, SOEST, 804 POST
Univ. Hawaii at Manoa ph: 808-956-6649
1680 East-West Road fax: 808-956-5154
Honolulu, HI 96822 clintc at hawaii.edu
http://www.soest.hawaii.edu/GG/FACULTY/conrad
---------------------------------------------
Here is the output and error messages that I get:
[clintc at akua cookbook9]$ citcoms --coupled cookbook9.cfg
Problem has 17 x 25 x 17 nodes
Problem has 21 x 49 x 21 nodes
nz radius depth rho
1 0.550000 0.450000 1.000000e+00
2 0.572500 0.427500 1.000000e+00
3 0.595000 0.405000 1.000000e+00
4 0.615000 0.385000 1.000000e+00
5 0.635000 0.365000 1.000000e+00
6 0.655000 0.345000 1.000000e+00
7 0.675000 0.325000 1.000000e+00
8 0.695000 0.305000 1.000000e+00
9 0.715000 0.285000 1.000000e+00
13 0.795000 0.205000 1.000000e+00
14 0.815000 0.185000 1.000000e+00
15 0.835000 0.165000 1.000000e+00
16 0.855000 0.145000 1.000000e+00
17 0.875000 0.125000 1.000000e+00
10 0.735000 0.265000 1.000000e+00
11 0.755000 0.245000 1.000000e+00
12 0.775000 0.225000 1.000000e+00
13 0.795000 0.205000 1.000000e+00
25 0.775000 0.225000 1.000000e+00
26 0.784333 0.215667 1.000000e+00
27 0.793667 0.206333 1.000000e+00
28 0.803000 0.197000 1.000000e+00
29 0.812333 0.187667 1.000000e+00
nz radius depth rho
1 0.551000 0.449000 1.000000e+00
2 0.560333 0.439667 1.000000e+00
3 0.569667 0.430333 1.000000e+00
4 0.579000 0.421000 1.000000e+00
5 0.588333 0.411667 1.000000e+00
6 0.597667 0.402333 1.000000e+00
7 0.607000 0.393000 1.000000e+00
8 0.616333 0.383667 1.000000e+00
9 0.625667 0.374333 1.000000e+00
10 0.635000 0.365000 1.000000e+00
11 0.644333 0.355667 1.000000e+00
12 0.653667 0.346333 1.000000e+00
13 0.663000 0.337000 1.000000e+00
14 0.672333 0.327667 1.000000e+00
15 0.681667 0.318333 1.000000e+00
16 0.691000 0.309000 1.000000e+00
17 0.700333 0.299667 1.000000e+00
18 0.709667 0.290333 1.000000e+00
19 0.719000 0.281000 1.000000e+00
20 0.728333 0.271667 1.000000e+00
21 0.737667 0.262333 1.000000e+00
22 0.747000 0.253000 1.000000e+00
23 0.756333 0.243667 1.000000e+00
24 0.765667 0.234333 1.000000e+00
25 0.775000 0.225000 1.000000e+00
18 0.895000 0.105000 1.000000e+00
19 0.915000 0.085000 1.000000e+00
20 0.935000 0.065000 1.000000e+00
21 0.955000 0.045000 1.000000e+00
22 0.966250 0.033750 1.000000e+00
23 0.977500 0.022500 1.000000e+00
24 0.988750 0.011250 1.000000e+00
25 1.000000 0.000000 1.000000e+00
30 0.821667 0.178333 1.000000e+00
31 0.831000 0.169000 1.000000e+00
32 0.840333 0.159667 1.000000e+00
33 0.849667 0.150333 1.000000e+00
34 0.859000 0.141000 1.000000e+00
35 0.868333 0.131667 1.000000e+00
36 0.877667 0.122333 1.000000e+00
37 0.887000 0.113000 1.000000e+00
38 0.896333 0.103667 1.000000e+00
39 0.905667 0.094333 1.000000e+00
40 0.915000 0.085000 1.000000e+00
41 0.924333 0.075667 1.000000e+00
42 0.933667 0.066333 1.000000e+00
43 0.943000 0.057000 1.000000e+00
44 0.952333 0.047667 1.000000e+00
45 0.961667 0.038333 1.000000e+00
46 0.971000 0.029000 1.000000e+00
47 0.980333 0.019667 1.000000e+00
48 0.989667 0.010333 1.000000e+00
49 0.999000 0.001000 1.000000e+00
initialization time = 0.304688
Traceback (most recent call last):
File "<string>", line 1, in ?
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/mpi/__init__.py", line 42, in mpistart
kwds = kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/__init__.py", line 41, in start
shell.run(**kwds)
Traceback (most recent call last):
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/Shell.py", line 142, in run
method(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/SuperScript.py", line 49, in execute
self.main(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/SuperScript.py", line 58, in main
self.runSubscript(*args, **kwds)
File "<string>", line 1, in ?
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/SuperScript.py", line 62, in runSubscript
self.subscript.run(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/mpi/__init__.py", line 42, in mpistart
kwds = kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/Application.py", line 42, in run
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/__init__.py", line 41, in start
shell.run(*args, **kwds)
shell.run(**kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/Shell.py", line 142, in run
method(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/Shell.py", line 142, in run
method(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/mpi/Application.py", line 118, in _onComputeNodes
self.onComputeNodes(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/SuperScript.py", line 49, in execute
self.main(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/mpi/Application.py", line 124, in onComputeNodes
self.main(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/SuperScript.py", line 58, in main
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/
BaseApplication.py", line 61, in main
self.runSubscript(*args, **kwds)
self.initialize()
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/
CoupledApp.py", line 71, in initialize
self.controller.initialize(self)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/SuperScript.py", line 62, in runSubscript
self.subscript.run(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/
Controller.py", line 57, in initialize
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/Application.py", line 42, in run
self.solver.initialize(app)
shell.run(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Solver/
CoupledSolver.py", line 53, in initialize
self.coupler.initialize(self)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/Shell.py", line 142, in run
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Coupler/
ContainingCoupler.py", line 40, in initialize
method(*args, **kwds)
Coupler.initialize(self, solver)
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Coupler/
Coupler.py", line 76, in initialize
from ExchangerLib import initConvertor
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/mpi/Application.py", line 118, in _onComputeNodes
ImportError: No module named ExchangerLib
self.onComputeNodes(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/mpi/Application.py", line 124, in onComputeNodes
self.main(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/
BaseApplication.py", line 61, in main
self.initialize()
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/
CoupledApp.py", line 71, in initialize
self.controller.initialize(self)
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/
Controller.py", line 57, in initialize
self.solver.initialize(app)
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Solver/
CoupledSolver.py", line 53, in initialize
self.coupler.initialize(self)
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Coupler/
ContainingCoupler.py", line 40, in initialize
Coupler.initialize(self, solver)
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Coupler/
Coupler.py", line 76, in initialize
from ExchangerLib import initConvertor
ImportError: No module named ExchangerLib
Traceback (most recent call last):
File "<string>", line 1, in ?
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/mpi/__init__.py", line 42, in mpistart
kwds = kwds)
Traceback (most recent call last):
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/__init__.py", line 41, in start
shell.run(**kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/Shell.py", line 142, in run
method(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/SuperScript.py", line 49, in execute
self.main(*args, **kwds)
File "<string>", line 1, in ?
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/SuperScript.py", line 58, in main
self.runSubscript(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/SuperScript.py", line 62, in runSubscript
self.subscript.run(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/Application.py", line 42, in run
shell.run(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/mpi/__init__.py", line 42, in mpistart
kwds = kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/Shell.py", line 142, in run
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/__init__.py", line 41, in start
shell.run(**kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/Shell.py", line 142, in run
method(*args, **kwds)
method(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/mpi/Application.py", line 118, in _onComputeNodes
self.onComputeNodes(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/mpi/Application.py", line 124, in onComputeNodes
self.main(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/
BaseApplication.py", line 61, in main
self.initialize()
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/SuperScript.py", line 49, in execute
self.main(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/
CoupledApp.py", line 71, in initialize
self.controller.initialize(self)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/SuperScript.py", line 58, in main
self.runSubscript(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/
Controller.py", line 57, in initialize
self.solver.initialize(app)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/SuperScript.py", line 62, in runSubscript
self.subscript.run(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Solver/
CoupledSolver.py", line 53, in initialize
self.coupler.initialize(self)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/Application.py", line 42, in run
shell.run(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Coupler/
EmbeddedCoupler.py", line 49, in initialize
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/pyre/applications/Shell.py", line 142, in run
method(*args, **kwds)
Coupler.initialize(self, solver)
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Coupler/
Coupler.py", line 76, in initialize
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/mpi/Application.py", line 118, in _onComputeNodes
from ExchangerLib import initConvertor
ImportError: No module named ExchangerLib
self.onComputeNodes(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/python/pythia-0.8.1.7-
py2.4.egg/mpi/Application.py", line 124, in onComputeNodes
self.main(*args, **kwds)
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/
BaseApplication.py", line 61, in main
self.initialize()
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/
CoupledApp.py", line 71, in initialize
self.controller.initialize(self)
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/
Controller.py", line 57, in initialize
self.solver.initialize(app)
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Solver/
CoupledSolver.py", line 53, in initialize
self.coupler.initialize(self)
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Coupler/
EmbeddedCoupler.py", line 49, in initialize
Coupler.initialize(self, solver)
File "/share/data/clintc/citcom/CitcomS-3.0.3/CitcomS/Coupler/
Coupler.py", line 76, in initialize
from ExchangerLib import initConvertor
ImportError: No module named ExchangerLib
--pyre-start: mpirun: exit 1
/share/data/clintc/citcom/CitcomS/bin/citcoms: /share/data/clintc/
citcom/CitcomS-3.0.3/bin/pycitcoms: exit 1
[clintc at akua cookbook9]$
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