[CIG-MC] cookbook9: new error
Magali Billen
mibillen at ucdavis.edu
Wed Jun 23 13:01:03 PDT 2010
Hello,
I decided to go ahead and recompile/install the Exchanger and CitcomS
from scratch just in case
the fact that I had CitcomS previously compiled without the exchanger
was causing a problem.
When I tried running cookbook9 again, I now get a different error:
[billen at ymir Cookbook9]$ more qckbk9.o60
Module GCC 4.4.4 Loaded.
Module OpenMPI v1.4.1 loaded.
Traceback (most recent call last):
File "/home/billen/Src2/CitcomS-3.1.1/bin/citcoms", line 56, in ?
from CitcomS.CoupledApp import CoupledApp as App
File "/home/billen/Src2/CitcomS-3.1.1/CitcomS/CoupledApp.py", line
29, in ?
from BaseApplication import BaseApplication
File "/home/billen/Src2/CitcomS-3.1.1/CitcomS/BaseApplication.py",
line 30, in ?
from mpi.Application import Application
ImportError: No module named mpi.Application
Here's the run command in my batch queue script:
/home/billen/Src2/CitcomS-3.1.1/bin/citcoms --coupled cookbook9.cfg
I submit the job with
> qsub -pe mpi 4 qckbk.cfg
I've tried to dig into the manual to see what the problem might be -
now I'm confused about
whether I must use a CitcomS.cfg file and not submit with the qsub
command. However, I've
been running with the batch queue with no problems before I compiled
with the Exchanger.
I've attached the logs:
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And, here's my history showing exactly what I did for the installation:
300 12:11 rm -fr $HOME/cig
301 12:12 cd ..
302 12:12 mkdir Src2
303 12:12 cp Src/*.tar Src2/.
304 12:12 cd Src2
306 12:12 tar -xvf CitcomS-3.1.1.tar
308 12:12 tar -xvf Exchanger-1.0.1.tar
310 12:13 cd Exchanger-1.0.1
312 12:13 ./configure -prefix=$HOME/cig
314 12:14 make install
315 12:16 setenv PYTHONPATH $home/cig/lib/python2.4/site-packages
316 12:16 cd ../CitcomS-3.1.1
318 12:17 ./configure --with-exchanger
319 12:18 make
321 12:20 cd
322 12:20 cd Input/
324 12:20 cd Cookbook9/
326 12:20 vi qckbk9
327 12:20 more qckbk9
329 12:21 more cookbook9.cfg
330 12:21 qsub -pe mpi 4 qckbk9
Let me know if there's anything else I can try on my end. I'm very
confused at the source of the error.
Magali
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