[CIG-MC] cookbook9: new error

Magali Billen mibillen at ucdavis.edu
Wed Jun 23 13:01:03 PDT 2010


Hello,

I decided to go ahead and recompile/install the Exchanger and CitcomS  
from scratch just in case
the fact that I had CitcomS previously compiled without the exchanger  
was causing a problem.

When I tried running cookbook9 again, I now get a different error:

[billen at ymir Cookbook9]$ more qckbk9.o60
Module GCC 4.4.4 Loaded.
Module OpenMPI v1.4.1 loaded.
Traceback (most recent call last):
   File "/home/billen/Src2/CitcomS-3.1.1/bin/citcoms", line 56, in ?
     from CitcomS.CoupledApp import CoupledApp as App
   File "/home/billen/Src2/CitcomS-3.1.1/CitcomS/CoupledApp.py", line  
29, in ?
     from BaseApplication import BaseApplication
   File "/home/billen/Src2/CitcomS-3.1.1/CitcomS/BaseApplication.py",  
line 30, in ?
     from mpi.Application import Application
ImportError: No module named mpi.Application

Here's the run command in my batch queue script:
	/home/billen/Src2/CitcomS-3.1.1/bin/citcoms --coupled cookbook9.cfg
I submit the job with
 > qsub -pe mpi 4 qckbk.cfg

I've tried to dig into the manual to see what the problem might be -  
now I'm confused about
whether I must use a CitcomS.cfg file and not submit with the qsub  
command. However, I've
been running with the batch queue with no problems before I compiled  
with the Exchanger.

I've attached the logs:
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And, here's my history showing exactly what I did for the installation:
    300	12:11	rm -fr $HOME/cig
    301	12:12	cd ..
    302	12:12	mkdir Src2
    303	12:12	cp Src/*.tar Src2/.
    304	12:12	cd Src2
    306	12:12	tar -xvf CitcomS-3.1.1.tar
    308	12:12	tar -xvf Exchanger-1.0.1.tar
    310	12:13	cd Exchanger-1.0.1
    312	12:13	./configure -prefix=$HOME/cig
    314	12:14	make install
    315	12:16	setenv PYTHONPATH $home/cig/lib/python2.4/site-packages
    316	12:16	cd ../CitcomS-3.1.1
    318	12:17	./configure --with-exchanger
    319	12:18	make
    321	12:20	cd
    322	12:20	cd Input/
    324	12:20	cd Cookbook9/
    326	12:20	vi qckbk9
    327	12:20	more qckbk9
    329	12:21	more cookbook9.cfg
    330	12:21	qsub -pe mpi 4 qckbk9

Let me know if there's anything else I can try on my end. I'm very  
confused at the source of the error.
Magali




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