[CIG-MC] Aspect installation error
John Naliboff
jbnaliboff at ucdavis.edu
Sat Nov 4 11:01:20 PDT 2017
Hi again,
Noah, apologies - I got installation question emails mixed up and didn’t realize you are in fact using the mac deal.II app.
A couple of thought on the compiler issues:
>>> bash-3.2$ /Applications/CMake.app/Contents/bin/cmake \
>>> > -D DEAL_II_DIR=/Applications/deal.II.app/Contents/Resources \
>>> > -D CMAKE_C_COMPILER="mpicc" \
>>> > -D CMAKE_CXX_COMPILER="mpicxx" \
>>> > -D CMAKE_CXX_FLAGS="-g -O3 -std=c++11" \
>>> > -D CMAKE_C_FLAGS="-g -O3" \
>>> > ../
There should be no need to specify all of these flags when using the deal.II app. My procedure for compiling ASPECT on my mac is as follows:
1. Open a terminal and cd to the aspect directory
2. Initiate the deal.II app via the command: /Applications/deal.II-8.5-brew.app/Contents/Resources/bin/./dealii-terminal
3. Compile with “cmake .” (Debug) or “cmake -DCMAKE_BUILD_TYPE=Release .” (optimized).
The key part is initiating the dealii-terminal, which loads all the required flags you specified above. For example, here are the defaults for mpicc, cmake and $DEAL_II_DIR initiated through the deal.II app:
bash-3.2$ echo $DEAL_II_DIR
/Applications/deal.II-8.5-brew.app/Contents/Resources
bash-3.2$ which mpicc
/Applications/deal.II-8.5-brew.app/Contents/Resources/brew/bin/mpicc
bash-3.2$ which cmake
/Applications/deal.II-8.5-brew.app/Contents/Resources/brew/bin/cmake
bash-3.2$
I suspect the compiler flags you specified are not pointing to the correct compilers.
Cheers,
John
*************************************************
John Naliboff
Assistant Project Scientist, CIG
Earth & Planetary Sciences Dept., UC Davis
> On Nov 4, 2017, at 8:28 AM, John Naliboff <jbnaliboff at ucdavis.edu> wrote:
>
> Hi all,
>
> Max - did you get all of the packages to install successfully with Candi on your mac? I tried to install everything from scratch a ways back (> 1 year?) on my mac with no success. Fantastic if candi is working well on the more recent Mac OS.
>
> Noah - the quickest way to install ASPECT on your mac is via the deal.II mac “app” package that comes with all of ASPECT’s dependencies pre-built. For detailed instructions, see: https://github.com/dealii/dealii/wiki/MacOSX <https://github.com/dealii/dealii/wiki/MacOSX>
>
> If you run into additional installation trouble, I recommend emailing the ASPECT developer email list: aspect-devel at geodynamics.org <mailto:aspect-devel at geodynamics.org>
>
> Hope this helps.
>
> Cheers,
> John
>
> *************************************************
> John Naliboff
> Assistant Project Scientist, CIG
> Earth & Planetary Sciences Dept., UC Davis
>
>
>
>> On Nov 3, 2017, at 8:06 PM, Maxwell Rudolph <maxrudolph at ucdavis.edu <mailto:maxrudolph at ucdavis.edu>> wrote:
>>
>> Noah,
>> I have not tried to install aspect and deal.ii using the method in that document but it is now more than two years out of date. A lot has happened in deal.ii and aspect development in this time. In particular, there is now candi. I was able to install trilinos, p4est, deal.ii and aspect very easily on my mac. Hope this helps.
>>
>> Max
>>
>> On Fri, Nov 3, 2017 at 4:43 PM, Hiroaki Matsui <hrmatsui at ucdavis.edu <mailto:hrmatsui at ucdavis.edu>> wrote:
>> Dear Hammond,
>>
>> Thank you for asking the installation problem.
>>
>> I made the instruction with Deal II v8.2.1 and I also meet the same problem by using deal II v8.5.
>> Then, this document becomes outdated instruction.
>>
>> I am solving this problem, and I also ask if anyone have already install the latest ASPECT with the latest deal ii. on the mailing list.
>>
>> Have a good weekend,
>> Hiro.
>>
>>> 2017/11/03 12:53、Hammond, Noah <noah_hammond at alumni.brown.edu <mailto:noah_hammond at alumni.brown.edu>> のメール：
>>>
>>> Hello, I have been following your document <https://wiki.geodynamics.org/_media/software:aspect:aspect_yosemite_20150529.pdf> on how to install ASPECT on Mac OS X. I ran into an error with compiling Aspect and I was wondering if you could help.
>>>
>>> I am using Mac OS X El Capitan, 10.11.6.
>>>
>>> After installing Cmake and Deal.II I ran into an error Configuring aspect. It looks like there is a problem with the C compiler but I will include the error message below. I am not very experienced with Cmake so any help would be appreciated. Thanks in advance. Below is the error message:
>>>
>>> bash-3.2$ /Applications/CMake.app/Contents/bin/cmake \
>>> > -D DEAL_II_DIR=/Applications/deal.II.app/Contents/Resources \
>>> > -D CMAKE_C_COMPILER="mpicc" \
>>> > -D CMAKE_CXX_COMPILER="mpicxx" \
>>> > -D CMAKE_CXX_FLAGS="-g -O3 -std=c++11" \
>>> > -D CMAKE_C_FLAGS="-g -O3" \
>>> > ../
>>> -- ====================================================
>>> -- ============ Configuring ASPECT ====================
>>> -- ====================================================
>>> -- Found deal.II version 8.5.0 at '/Applications/deal.II-8.5-brew.app/Contents/Resources/lib/cmake/deal.II'
>>> -- Using ASPECT_USE_PETSC = 'OFF'
>>> -- The C compiler identification is AppleClang 7.3.0.7030031
>>> -- The CXX compiler identification is AppleClang 7.3.0.7030031
>>> -- Check for working C compiler: /Applications/deal.II.app/Contents/Resources/opt/openmpi-1.6.5/bin/mpicc
>>> -- Check for working C compiler: /Applications/deal.II.app/Contents/Resources/opt/openmpi-1.6.5/bin/mpicc -- works
>>> -- Detecting C compiler ABI info
>>> -- Detecting C compiler ABI info - done
>>> -- Detecting C compile features
>>> -- Detecting C compile features - done
>>> -- Check for working CXX compiler: /Applications/deal.II.app/Contents/Resources/opt/openmpi-1.6.5/bin/mpicxx
>>> -- Check for working CXX compiler: /Applications/deal.II.app/Contents/Resources/opt/openmpi-1.6.5/bin/mpicxx -- works
>>> -- Detecting CXX compiler ABI info
>>> -- Detecting CXX compiler ABI info - done
>>> -- Detecting CXX compile features
>>> -- Detecting CXX compile features - done
>>> -- Setting up test project, see tests/setup_tests.log for details.
>>> CMake Error at /Applications/CMake.app/Contents/share/cmake-3.10/Modules/CMakeTestCXXCompiler.cmake:45 (message):
>>> The C++ compiler
>>>
>>> "/Applications/deal.II-8.5-brew.app/Contents/Resources/brew/bin/mpicxx"
>>>
>>> is not able to compile a simple test program.
>>>
>>> It fails with the following output:
>>>
>>> Change Dir: /Users/noahhammond/src/aspect/build_deal.ii.app/tests/CMakeFiles/CMakeTmp
>>>
>>> Run Build Command:"/usr/bin/make" "cmTC_65999/fast"
>>> /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/cmTC_65999.dir/build.make CMakeFiles/cmTC_65999.dir/build
>>> Building CXX object CMakeFiles/cmTC_65999.dir/testCXXCompiler.cxx.o
>>> /Applications/deal.II-8.5-brew.app/Contents/Resources/brew/bin/mpicxx -o CMakeFiles/cmTC_65999.dir/testCXXCompiler.cxx.o -c /Users/noahhammond/src/aspect/build_deal.ii.app/tests/CMakeFiles/CMakeTmp/testCXXCompiler.cxx
>>> make[1]: *** [CMakeFiles/cmTC_65999.dir/testCXXCompiler.cxx.o] Illegal instruction: 4
>>> make: *** [cmTC_65999/fast] Error 2
>>>
>>>
>>>
>>>
>>> CMake will not be able to correctly generate this project.
>>> Call Stack (most recent call first):
>>> CMakeLists.txt:19 (PROJECT)
>>>
>>>
>>> CMake Error at CMakeLists.txt:178 (MESSAGE):
>>> ERROR: Test project could not be configured.
>>>
>>>
>>> -- Configuring incomplete, errors occurred!
>>>
>>>
>>
>>
>> _______________________________________________
>> CIG-MC mailing list
>> CIG-MC at geodynamics.org <mailto:CIG-MC at geodynamics.org>
>> http://lists.geodynamics.org/cgi-bin/mailman/listinfo/cig-mc <http://lists.geodynamics.org/cgi-bin/mailman/listinfo/cig-mc>
>>
>> _______________________________________________
>> CIG-MC mailing list
>> CIG-MC at geodynamics.org <mailto:CIG-MC at geodynamics.org>
>> http://lists.geodynamics.org/cgi-bin/mailman/listinfo/cig-mc
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.geodynamics.org/pipermail/cig-mc/attachments/20171104/7ac6a0d8/attachment-0001.html>
More information about the CIG-MC
mailing list