From jbnaliboff at ucdavis.edu  Sun May  6 21:27:19 2018
From: jbnaliboff at ucdavis.edu (John Naliboff)
Date: Sun, 6 May 2018 21:27:19 -0700
Subject: [CIG-MC] CIG Webinar: ** Next Week ** 10 May @2P - ASPECT 2.0
Message-ID: <825DC682-6991-4E07-AF4C-D69EB795455F@ucdavis.edu>

Thursday, MAY 10 @2P PT 
ASPECT 2.0
Rene Gassmöller, Juliane Dannberg and John Naliboff, UC Davis

ASPECT, the Advanced Solver for Problems in Earth's ConvecTion, is a finite element code to simulate mantle convection and long-term tectonic processes. The code is built on modern numerical methods, incorporating adaptive mesh refinement and advanced linear and nonlinear solvers. This webinar highlights ASPECT’s new features, such as a graphical user interface for the creation and modification of input files, an overhaul of the solver for coupled magma/mantle dynamics, a new system for combining boundary and initial conditions, operator splitting methods to decouple fast reactions from advection, a material model for grain size evolution, a Newton solver and many other improvements.

Click the link below to join the webinar using zoom on your PC, Mac, Linux, iOS or Android:

https://zoom.us/j/384711375 <https://zoom.us/j/384711375>
Registration is required. Please log in early.

For more information on this and other CIG webinars, please visit us at: https://geodynamics.org/cig/events/webinars/ <https://geodynamics.org/cig/events/webinars/>



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From jbnaliboff at ucdavis.edu  Wed May  9 11:30:13 2018
From: jbnaliboff at ucdavis.edu (John Naliboff)
Date: Wed, 9 May 2018 11:30:13 -0700
Subject: [CIG-MC] CIG Webinar ** TOMORROW ** 10 May @2P - ASPECT 2.0
Message-ID: <49db9e48-5ce6-1b39-326b-59b44624aabb@ucdavis.edu>

*Thursday, MAY 10 @2P PT
ASPECT 2.0
*//Rene Gassmöller, Juliane Dannberg, Menno Fraters and John Naliboff/, 
UC Davis/

ASPECT, the Advanced Solver for Problems in Earth's ConvecTion, is a 
finite element code to simulate mantle convection and long-term tectonic 
processes. The code is built on modern numerical methods, incorporating 
adaptive mesh refinement and advanced linear and nonlinear solvers. This 
webinar highlights ASPECT’s new features, such as a graphical user 
interface for the creation and modification of input files, an overhaul 
of the solver for coupled magma/mantle dynamics, a new system for 
combining boundary and initial conditions, operator splitting methods to 
decouple fast reactions from advection, a material model for grain size 
evolution, a Newton solver and many other improvements.

Click the link below to join the webinar using zoom on your PC, Mac, 
Linux, iOS or Android:

https://zoom.us/j/384711375
Registration is required. Please log in early.

For more information on this and other CIG webinars, please visit us at: 
https://geodynamics.org/cig/events/webinars/
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From rhcui at asch.whigg.ac.cn  Thu May 10 00:05:46 2018
From: rhcui at asch.whigg.ac.cn (=?UTF-8?B?5bSU6I2j6Iqx?=)
Date: Thu, 10 May 2018 15:05:46 +0800 (GMT+08:00)
Subject: [CIG-MC] how to use python script to visualize output file
Message-ID: <4fe1f0d5.1a1c0.16348debccf.Coremail.rhcui@asch.whigg.ac.cn>

Dear all,

I am Ronghua Cui. Sorry for interrupting you. I want to use python scripts under directory 'visual' of CitcomS package, but I have some questions to ask.
The usage of script 'batchcombine.py' is like this:

Paste and combine Citcom data
Usage: batchcombine.py <machinefile | node-list> datadir datafile timestep nodex nodey nodez ncap nprocx nprocy nprocz [fields [ncompositions]]


What's the machinefile please? 

I want to combine coordinates and corresponding data files like surf and botm from instantaneous mantle flow to draw pictures. Could anybody give me an example of the usage of scripts 'batchcombine.py', 'autocombine.py' and 'batchsurf.py'?

Thanks.




With regards,

Ronghua
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From usmadiegof at gmail.com  Thu May 10 07:15:11 2018
From: usmadiegof at gmail.com (DIEGO USMA)
Date: Thu, 10 May 2018 14:15:11 +0000
Subject: [CIG-MC] how to use python scriiw pt to visualize output file .
Message-ID: <CAO8PpXm42tCOBBUU2gghDo6KACcvSjRRCwayY7YvwtTsFmZQdg@mail.gmail.com>

Qq

El may. 10, 2018 2:13 AM, "崔荣花" <rhcui at asch.whigg.ac.cn> escribió:

Dear all,

I am Ronghua Cui. Sorry for interrupting you. I want to use python scripts
under directory 'visual' of CitcomS package, but I have some questions to
ask.
The usage of script 'batchcombine.py' is like this:

*Paste and combine Citcom data*
*Usage: batchcombine.py <machinefile | node-list> datadir datafile timestep
nodex nodey nodez ncap nprocx nprocy nprocz [fields [ncompositions]]*

What's the machinefile please?

I want to combine coordinates and corresponding data files like surf and
botm from instantaneous mantle flow to draw pictures. Could anybody give me
an example of the usage of scripts 'batchcombine.py', 'autocombine.py' and
'batchsurf.py'?

Thanks.


With regards,

Ronghua
_______________________________________________
CIG-MC mailing list
CIG-MC at geodynamics.org
http://lists.geodynamics.org/cgi-bin/mailman/listinfo/cig-mc
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From ljhwang at ucdavis.edu  Thu May 10 09:26:40 2018
From: ljhwang at ucdavis.edu (Lorraine Hwang)
Date: Thu, 10 May 2018 09:26:40 -0700
Subject: [CIG-MC] CGU: Accommodations booking deadline TODAY - May 10
Message-ID: <96F82330-051D-4179-B225-72E2BC2E6E02@ucdavis.edu>



Dear 2018 Joint Meeting attendees, 

 
A friendly reminder that the deadline for accommodations bookings for the meeting at our highly discounted rates is TODAY (May 10). Instructions on booking accommodations can be found here: 
 
https://meeting2018.cgu-ugc.ca/accommodation/ <https://commuserui-vip.aw.active.com/click/1/428936404/3156c610-45f8-4adf-b31f-90d2ff8cbfb9/AE469C76-8493-4DEB-83BA-F8605E63B019/>
 
At this time, uptake of our economy rooms at the Radisson and Sheraton Four Points are fully taken up. There remains, however, a still quite large number of rooms available at the Marriott Fallsview, which is extremely close to the conference centre, still a great deal ($100-$150 cheaper per night than is currently available on discount travel websites) and for which the conference will be held financially responsible if too many rooms remain unbooked. Thus, taking advantage of these rates is not only good for your research program's pocketbook, but also for the non-profit societies you belong to. 
 
We very much look forward to seeing you in Niagara Falls in about a month!
 
 
 
On behalf of the 2018 Joint Meeting Local Organizing Committee
 <http://www.twitter.com/CGU_UGC>
This email was sent to lhkellogg at ucdavis.edu <mailto:lhkellogg at ucdavis.edu> by 
Canadian Geophysical Union
3450 University Street,	Montreal, QC,	H3A <https://maps.google.com/?q=3450+University+Street,%09%09+Montreal,++QC,%09+H3A&entry=gmail&source=g> 0E8	Canada	
To stop receiving these emails, unsubscribe here <https://activeworks.active.com/email/optout/agency/AE469C76-8493-4DEB-83BA-F8605E63B019/3156c610-45f8-4adf-b31f-90d2ff8cbfb9>. 

 <http://www.active.com/> 

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From rgassmoeller at ucdavis.edu  Thu May 10 18:16:27 2018
From: rgassmoeller at ucdavis.edu (Rene Gassmoeller)
Date: Thu, 10 May 2018 18:16:27 -0700
Subject: [CIG-MC] ASPECT 2.0.0 released
Message-ID: <edd9b969-dc6f-5dae-408c-291895273580@ucdavis.edu>

We are pleased to announce the release of ASPECT 2.0.0. ASPECT is the
Advanced
Solver for Problems in Earth's ConvecTion. It uses modern numerical
methods such
as adaptive mesh refinement, multigrid, and a modular software design to
provide a fast, flexible, and extensible mantle convection solver. ASPECT is
available from

                   https://aspect.geodynamics.org/

and the release is available from

        https://github.com/geodynamics/aspect/releases/tag/v2.0.0

This release includes the following changes:
- New: Newton solver and defect correction Picard iterations for nonlinear
  problems (for the Stokes system)
- Melt solver: Overhaul leading to improved performance and stability,
better
  integration with other plugins
- New: Material model with grain size evolution
- New: Boundary temperature plugin with evolving core-mantle boundary
  temperature based on the heat flux through the core-mantle boundary
- New: ASPECT can now compute the geoid in 3D spherical shell geometry
- New: Operator splitting for reactions between compositional fields
- New: Added a PREM gravity profile
- Improved: Significantly reduced memory consumption in models that use many
  compositional fields
- Improved: A large number of performance improvements for preconditioners,
  assembly, seismic tomography initial conditions, and lateral averaging
- Improved: More flexibility for boundary and initial conditions, different
  plugins can be combined
- Improved: The dynamic topography postprocessor now uses the consistent
  boundary flux method for computing surface stresses, which is
significantly
  more accurate
- New: Additional RHS force terms in the Stokes system can be added
- New particle interpolators: nearest neighbor, bilinear least squares,
  harmonic average
- New: Graphical user interface for the creation and modification of input
  parameter files
- Many other fixes and small improvements.
- Rework: Updated parameter and section names to make them more
consistent and
  easier to understand. A script for updating parameter and source files is
  provided with the release.

A complete list of changes can be found at
 
https://aspect.geodynamics.org/doc/doxygen/changes_between_1_85_80_and_2_80_80.html

Information about how to cite ASPECT can be found at
  https://aspect.geodynamics.org/cite.html
and
  https://geodynamics.org/cig/abc/?software=aspect&version=2.0.0

Wolfgang Bangerth, Juliane Dannberg, Rene Gassmoeller, Timo Heister,
Jacqueline Austermann, Menno Fraters, Anne Glerum, John Naliboff,
and many other contributors.

-- 
Rene Gassmoeller
https://gassmoeller.github.io/


From ouczwn at 163.com  Fri May 11 02:11:20 2018
From: ouczwn at 163.com (=?GBK?B?1dTOrMTI?=)
Date: Fri, 11 May 2018 17:11:20 +0800 (CST)
Subject: [CIG-MC] =?gbk?q?Ellipsis3D=A3=AC_for_help?=
Message-ID: <53bb0872.db7c.1634e780b32.Coremail.ouczwn@163.com>

dear，
i install the Ellipsis3D package on my computer, which is downloaded from  https://geodynamics.org/cig/software/ellipsis3d/.
When i test it on the chemical plume example according to the "README", several problems cropped up.
Q1: line10 in  "README", "Let it run as long as you like"---- It means i can rudely interrupt the program at any time. Is it right?
Q2: line 14 in  in  "README", when i typed "./get_node_files_dx_format.mk", it peompted "rm: cannot delete nodes0*: no file or directory    00001" . Does it influence the next progress?
Q3:  line 15 in  in  "README", when i typed "./get_particles_dx_format.mk",  "rm: cannot delete materialOnePoints_0*: no file or directory"   "rm: cannot delete materials_0*: no file or directory" and "Can't locate getopts.pl in @INC contains: /usr/local ……………………at Binary_read.pl line3. 0001 " appeared, following abundant "Could not open input file, nl: materialOnePoints_00001.dat:  no file or directory。  Can't locate getopts.pl in @INC contains: /usr/local ……………………at Binary_read.pl line3. 0006 "……………………………………
Will i need to change something in "get_node_file_dx_format.mk" and "get_particles_dx_format.mk"? I donnot know where i should change.


How can i solve this problem?
I really appreciate your help.








--

Best wishes。


Weina Zhao
Guangdong Ocean University







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From ljhwang at ucdavis.edu  Mon May 14 09:59:53 2018
From: ljhwang at ucdavis.edu (Lorraine Hwang)
Date: Mon, 14 May 2018 09:59:53 -0700
Subject: [CIG-MC] 2018 CGU CIG Joint Meeting - Hotel deadline extended
Message-ID: <AC149334-121F-4969-B118-E812C436177E@ucdavis.edu>


2018 CGU CIG Joint Meeting - June 10-14, Niagara Falls

Rooms are still available at the meeting rate for the Marriott Fallsview Hotel for the upcoming 2018 CGU CIG Joint Meeting in Niagara Falls, Canada. Room rates for CGU attendees are discounted ~33%. Book this week before rates go up. 

Please note that rooms are no longer available at the Radisson and Sheraton Four Points.

https://meeting2018.cgu-ugc.ca/accommodation/ <https://meeting2018.cgu-ugc.ca/accommodation/>

Best,
-Lorraine

*****************************
Lorraine Hwang, Ph.D.
Associate Director, CIG
530.752.3656



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From jbnaliboff at ucdavis.edu  Mon May 14 15:06:32 2018
From: jbnaliboff at ucdavis.edu (John Naliboff)
Date: Mon, 14 May 2018 15:06:32 -0700
Subject: [CIG-MC] =?utf-8?q?Ellipsis3D=EF=BC=8C_for_help?=
In-Reply-To: <53bb0872.db7c.1634e780b32.Coremail.ouczwn@163.com>
References: <53bb0872.db7c.1634e780b32.Coremail.ouczwn@163.com>
Message-ID: <F04BBC3E-B625-4914-A5DF-8000C8673610@ucdavis.edu>

Dear Weina,

At present, Ellipsis3D is no longer supported by CIG and none of us have used it in quite some time (~ 5-10 years). Unless they are watching this mailing list, I suspect you would need to contact the original developers directly to answer your questions.

However, may I ask what type of process/problem your are planning to tackle with Ellipsise3D? There are a number of other community lithospheric dynamics code that are being actively developed and may be more suitable for your intended application. 
Let me know if you would like a few recommendations.

Cheers,
John
 
*************************************************
John Naliboff
Assistant Project Scientist, CIG
Earth & Planetary Sciences Dept., UC Davis




> On May 11, 2018, at 2:11 AM, 赵维娜 <ouczwn at 163.com> wrote:
> 
> dear，
> i install the Ellipsis3D package on my computer, which is downloaded from  https://geodynamics.org/cig/software/ellipsis3d/. <https://geodynamics.org/cig/software/ellipsis3d/>
> When i test it on the chemical plume example according to the "README", several problems cropped up.
> Q1: line10 in  "README", "Let it run as long as you like"---- It means i can rudely interrupt the program at any time. Is it right?
> Q2: line 14 in  in  "README", when i typed "./get_node_files_dx_format.mk", it peompted "rm: cannot delete nodes0*: no file or directory    00001" . Does it influence the next progress?
> Q3:  line 15 in  in  "README", when i typed "./get_particles_dx_format.mk",  "rm: cannot delete materialOnePoints_0*: no file or directory"   "rm: cannot delete materials_0*: no file or directory" and "Can't locate getopts.pl in @INC contains: /usr/local ……………………at Binary_read.pl line3. 0001 " appeared, following abundant "Could not open input file, nl: materialOnePoints_00001.dat:  no file or directory。  Can't locate getopts.pl in @INC contains: /usr/local ……………………at Binary_read.pl line3. 0006 "……………………………………
> Will i need to change something in "get_node_file_dx_format.mk" and "get_particles_dx_format.mk"? I donnot know where i should change.
> 
> How can i solve this problem?
> I really appreciate your help.
> 
> 
> 
> 
> 
> 
> --
> Best wishes。
> 
> Weina Zhao
> Guangdong Ocean University
> 
> 
> 
> 
> _______________________________________________
> CIG-MC mailing list
> CIG-MC at geodynamics.org
> http://lists.geodynamics.org/cgi-bin/mailman/listinfo/cig-mc

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From tan2tan2 at gmail.com  Wed May 23 19:30:19 2018
From: tan2tan2 at gmail.com (tan2)
Date: Thu, 24 May 2018 10:30:19 +0800
Subject: [CIG-MC] how to use python script to visualize output file
In-Reply-To: <4fe1f0d5.1a1c0.16348debccf.Coremail.rhcui@asch.whigg.ac.cn>
References: <4fe1f0d5.1a1c0.16348debccf.Coremail.rhcui@asch.whigg.ac.cn>
Message-ID: <CAHwzshfoZ2=TR6yp2XnjOHUadd_sHWaO2RGpX=aLyRD+--patg@mail.gmail.com>

Hi Ronghua,

It is likely that your cluster has a job queue and you won't have to supply
a machinefile when you submit an mpi job. In this case, you can use
'localhost' to replace machinefile in the command line argument for
batchcombine.py.



Cheers,



On Thu, May 10, 2018 at 3:05 PM, 崔荣花 <rhcui at asch.whigg.ac.cn> wrote:

> Dear all,
>
> I am Ronghua Cui. Sorry for interrupting you. I want to use python scripts
> under directory 'visual' of CitcomS package, but I have some questions to
> ask.
> The usage of script 'batchcombine.py' is like this:
>
> *Paste and combine Citcom data*
> *Usage: batchcombine.py <machinefile | node-list> datadir datafile
> timestep nodex nodey nodez ncap nprocx nprocy nprocz [fields
> [ncompositions]]*
>
> What's the machinefile please?
>
> I want to combine coordinates and corresponding data files like surf and
> botm from instantaneous mantle flow to draw pictures. Could anybody give me
> an example of the usage of scripts 'batchcombine.py', 'autocombine.py' and
> 'batchsurf.py'?
>
> Thanks.
>
>
> With regards,
>
> Ronghua
>
> _______________________________________________
> CIG-MC mailing list
> CIG-MC at geodynamics.org
> http://lists.geodynamics.org/cgi-bin/mailman/listinfo/cig-mc
>
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