[CIG-SEISMO] MPI setting (?) in SPECFEM3D
Kenichi Tsuda
kenichi.tsuda at shimz.co.jp
Sat Feb 27 00:23:51 PST 2016
Dear
My name is Kenichi Tsuda.
I'm working for the private company in Japan
and involving the project using SPECFEM3D related to fault dynamics.
Recently I have updated the latest version of SPECFEM3D package.
Then I tried to run the code and xdecompose_mesh looked working.
However, when I have run the generate_database, I met some errors
showing as follows and stopped the calculation.
--------------------------------------------
application called MPI_Abort(MPI_COMM_WORLD, 30) - process 57
application called MPI_Abort(MPI_COMM_WORLD, 30) - process 17
and
Error detected, aborting MPI... proc 51
error sorting MPI interface points: 46
interface: 6 24207 24192
error sorting MPI interface
Error detected, aborting MPI... proc 46
APPLICATION TERMINATED WITH THE EXIT STRING: Hangup (signal 1)
--------------------------------------------
Even after I updated some codes (using development version) such as the
parallel.f90, the situation is not changed.
When I do the configuration, I set the option
”MPI_INC=/opt/intel/impi/4.0.3.008/intel64/include”
Also the output_mesher.txt has stopped on the following spot
----------------------------------------------------------------------
create regions:
...allocating arrays
... reading 1 faults from file DATA/Par_file_faults
...setting up jacobian
...indexing global points
... resetting up jacobian in fault domains
...preparing MPI interfaces
----------------------------------------------------------------------
If you have any idea to be corrected or to be checked, please let me know.
I really appreciate your help.
Regards
Kenichi
----------------------------------------
Kenichi Tsuda, Ph.D.
Earthquake Science & Engineering Group
Center for Safety and Reliability Engineering
Institute of Technology Shimizu Corporation
Phone: +81-3-3820-5652
fax : +81-3-3820-5959
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