[CIG-SHORT] Trouble Installing Stable Pylith 1.5 -- petscmesh.hh not found

Wed Oct 20 14:47:35 PDT 2010

Is you PETSc configured using --with-clanguage=cxx?

  Matt

On Wed, Oct 20, 2010 at 4:46 PM, Matthew Knepley <knepley at mcs.anl.gov>wrote:

> Something is quite wrong here because you have no PETSc include path at all
> in that
> compile. How did you install PETSc?
>
>   Matt
>
> On Wed, Oct 20, 2010 at 4:12 PM, Jeffrey Thompson <jeffremt at gmail.com>wrote:
>
>> Hello CIG-Short,
>>
>> I'm trying to make and install the stable version of Pylith, and I ran
>> into the error below after issuing the "make" command.  It seems to me that
>> the main error is that Pylith cannot find the petscmesh.hh file.  I updated
>> PETSc and spatialdata before Pylith, so I should have the most recent
>> versions of these programs.  I also tried installing the version Pylith from
>> the trunk directory, and the same error occured.  I've attached my
>> config.log file from the 'stable' pylith install.
>>
>> Thanks in advance,
>> Jeff Thompson
>> Seismolab
>> California Institute of Technology
>>
>> make[3]: Entering directory `/home/jeffremt/tools/cig/v1.5-stable/libsrc'
>> if /bin/sh ../libtool --mode=compile --tag=CXX g++ -DHAVE_CONFIG_H -I. -I.
>> -I.. -I../include
>> -I/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.11-py2.5.egg
>> -I/usr/include/python2.5  -DENABLE_CUBIT
>> -I/home/jeffremt/tools/proj-4.7.0/gcc-4.1.1_64/include
>> -I/home/jeffremt/tools/cppunit-1.12.1/gcc-4.1.1_64/include
>> -I/home/jeffremt/tools/cig/gcc-4.1.1_64/include
>> -I/home/jeffremt/tools/cig/gcc-4.1.1_64/include/pythia-0.8.1.10
>> -I/home/jeffremt/tools/netcdf-4.0.1/gcc-4.1.1_64/include  -g -O2 -MT
>> BoundaryCondition.lo -MD -MP -MF ".deps/BoundaryCondition.Tpo" -c -o
>> BoundaryCondition.lo `test -f 'bc/BoundaryCondition.cc' || echo
>> './'`bc/BoundaryCondition.cc; \
>> then mv -f ".deps/BoundaryCondition.Tpo" ".deps/BoundaryCondition.Plo";
>> else rm -f ".deps/BoundaryCondition.Tpo"; exit 1; fi
>> mkdir .libs
>>  g++ -DHAVE_CONFIG_H -I. -I. -I.. -I../include
>> -I/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.11-py2.5.egg
>> -I/usr/include/python2.5 -DENABLE_CUBIT
>> -I/home/jeffremt/tools/proj-4.7.0/gcc-4.1.1_64/include
>> -I/home/jeffremt/tools/cppunit-1.12.1/gcc-4.1.1_64/include
>> -I/home/jeffremt/tools/cig/gcc-4.1.1_64/include
>> -I/home/jeffremt/tools/cig/gcc-4.1.1_64/include/pythia-0.8.1.10
>> -I/home/jeffremt/tools/netcdf-4.0.1/gcc-4.1.1_64/include -g -O2 -MT
>> BoundaryCondition.lo -MD -MP -MF .deps/BoundaryCondition.Tpo -c
>> bc/BoundaryCondition.cc  -fPIC -DPIC -o .libs/BoundaryCondition.o
>> In file included from bc/BoundaryCondition.cc:23:
>> ../include/pylith/topology/Mesh.hh:33:43: petscmesh.hh: No such file or
>> directory
>> In file included from bc/BoundaryCondition.cc:23:
>> ../include/pylith/topology/Mesh.hh:59: error: `ALE' has not been declared
>> ../include/pylith/topology/Mesh.hh:59: error: ISO C++ forbids declaration
>> of `IMesh' with no type
>> ../include/pylith/topology/Mesh.hh:59: error: expected `;' before '<'
>> token
>> ../include/pylith/topology/Mesh.hh:60: error: `SieveMesh' has not been
>> declared
>> ../include/pylith/topology/Mesh.hh:60: error: ISO C++ forbids declaration
>> of `real_section_type' with no type
>> ../include/pylith/topology/Mesh.hh:60: error: expected `;' before
>> "RealSection"
>> ../include/pylith/topology/Mesh.hh:61: error: `SieveMesh' has not been
>> declared
>> ../include/pylith/topology/Mesh.hh:61: error: ISO C++ forbids declaration
>> of `int_section_type' with no type
>> ../include/pylith/topology/Mesh.hh:61: error: expected `;' before
>> "IntSection"
>> ../include/pylith/topology/Mesh.hh:62: error: `ALE' has not been declared
>> ../include/pylith/topology/Mesh.hh:62: error: ISO C++ forbids declaration
>> of `IMesh' with no type
>> ../include/pylith/topology/Mesh.hh:62: error: expected `;' before '<'
>> token
>> ../include/pylith/topology/Mesh.hh:63: error: `ALE' has not been declared
>> ../include/pylith/topology/Mesh.hh:63: error: ISO C++ forbids declaration
>> of `RestrictVisitor' with no type
>> ../include/pylith/topology/Mesh.hh:63: error: expected `;' before '<'
>> token
>> ../include/pylith/topology/Mesh.hh:64: error: `ALE' has not been declared
>> ../include/pylith/topology/Mesh.hh:64: error: ISO C++ forbids declaration
>> of `UpdateAddVisitor' with no type
>> ../include/pylith/topology/Mesh.hh:64: error: expected `;' before '<'
>> token
>> ../include/pylith/topology/Mesh.hh:65: error: `ALE' has not been declared
>> ../include/pylith/topology/Mesh.hh:65: error: ISO C++ forbids declaration
>> of `UpdateAllVisitor' with no type
>> ../include/pylith/topology/Mesh.hh:65: error: expected `;' before '<'
>> token
>> ../include/pylith/topology/Mesh.hh:66: error: `ALE' has not been declared
>> ../include/pylith/topology/Mesh.hh:66: error: ISO C++ forbids declaration
>> of `IndicesVisitor' with no type
>> ../include/pylith/topology/Mesh.hh:66: error: expected `;' before '<'
>> token
>> ../include/pylith/topology/Mesh.hh:82: error: expected `,' or `...' before
>> '&' token
>> ../include/pylith/topology/Mesh.hh:82: error: ISO C++ forbids declaration
>> of `MPI_Comm' with no type
>> ../include/pylith/topology/Mesh.hh:100: error: `ALE' has not been declared
>> ../include/pylith/topology/Mesh.hh:100: error: ISO C++ forbids declaration
>> of `Obj' with no type
>> ../include/pylith/topology/Mesh.hh:100: error: expected `;' before '<'
>> token
>> ../include/pylith/topology/Mesh.hh:106: error: `ALE' has not been declared
>> ../include/pylith/topology/Mesh.hh:106: error: ISO C++ forbids declaration
>> of `Obj' with no type
>> ../include/pylith/topology/Mesh.hh:106: error: expected `;' before '<'
>> token
>> ../include/pylith/topology/Mesh.hh:160: error: expected `,' or `...'
>> before "value"
>> ../include/pylith/topology/Mesh.hh:160: error: ISO C++ forbids declaration
>> of `MPI_Comm' with no type
>> ../include/pylith/topology/Mesh.hh:166: error: `MPI_Comm' does not name a
>> type
>> ../include/pylith/topology/Mesh.hh:195: error: `ALE' has not been declared
>> ../include/pylith/topology/Mesh.hh:195: error: ISO C++ forbids declaration
>> of `Obj' with no type
>> ../include/pylith/topology/Mesh.hh:195: error: expected `;' before '<'
>> token
>> ../include/pylith/topology/Mesh.hh:197: error: `MPI_Comm' does not name a
>> type
>> In file included from ../include/pylith/topology/Mesh.hh:208,
>>                  from bc/BoundaryCondition.cc:23:
>> ../include/pylith/topology/Mesh.icc:25: error: `ALE' has not been declared
>> ../include/pylith/topology/Mesh.icc:25: error: expected initializer before
>> '<' token
>> ../include/pylith/topology/Mesh.icc:32: error: `ALE' has not been declared
>> ../include/pylith/topology/Mesh.icc:32: error: expected initializer before
>> '<' token
>> ../include/pylith/topology/Mesh.icc: In member function `void
>> pylith::topology::Mesh::debug(bool)':
>> ../include/pylith/topology/Mesh.icc:49: error: `_mesh' was not declared in
>> this scope
>> ../include/pylith/topology/Mesh.icc: In member function `int
>> pylith::topology::Mesh::dimension() const':
>> ../include/pylith/topology/Mesh.icc:64: error: `_mesh' was not declared in
>> this scope
>> ../include/pylith/topology/Mesh.icc: In member function `int
>> pylith::topology::Mesh::coneSize() const':
>> ../include/pylith/topology/Mesh.icc:71: error: `_mesh' was not declared in
>> this scope
>> ../include/pylith/topology/Mesh.icc: In member function `int
>> pylith::topology::Mesh::numVertices() const':
>> ../include/pylith/topology/Mesh.icc:78: error: `_mesh' was not declared in
>> this scope
>> ../include/pylith/topology/Mesh.icc: In member function `int
>> pylith::topology::Mesh::numCells() const':
>> ../include/pylith/topology/Mesh.icc:85: error: `_mesh' was not declared in
>> this scope
>> ../include/pylith/topology/Mesh.icc: At global scope:
>> ../include/pylith/topology/Mesh.icc:91: error: expected `,' or `...'
>> before "value"
>> ../include/pylith/topology/Mesh.icc:91: error: ISO C++ forbids declaration
>> of `MPI_Comm' with no type
>> ../include/pylith/topology/Mesh.icc: In member function `void
>> pylith::topology::Mesh::comm(int)':
>> ../include/pylith/topology/Mesh.icc:92: error: `_comm' was not declared in
>> this scope
>> ../include/pylith/topology/Mesh.icc:92: error: `value' was not declared in
>> this scope
>> ../include/pylith/topology/Mesh.icc: At global scope:
>> ../include/pylith/topology/Mesh.icc:97: error: `MPI_Comm' does not name a
>> type
>> ../include/pylith/topology/Mesh.icc: In member function `void
>> pylith::topology::Mesh::view(const char*) const':
>> ../include/pylith/topology/Mesh.icc:106: error: `_mesh' was not declared
>> in this scope
>> bc/BoundaryCondition.cc: In member function `virtual void
>> pylith::bc::BoundaryCondition::verifyConfiguration(const
>> pylith::topology::Mesh&) const':
>> bc/BoundaryCondition.cc:53: error: `ALE' has not been declared
>> bc/BoundaryCondition.cc:53: error: expected initializer before '<' token
>> bc/BoundaryCondition.cc:54: error: `sieveMesh' was not declared in this
>> scope
>> bc/BoundaryCondition.cc:57: error: aggregate `std::ostringstream msg' has
>> incomplete type and cannot be defined
>> make[3]: *** [BoundaryCondition.lo] Error 1
>> make[3]: Leaving directory `/home/jeffremt/tools/cig/v1.5-stable/libsrc'
>> make[2]: *** [all-recursive] Error 1
>> make[2]: Leaving directory `/home/jeffremt/tools/cig/v1.5-stable/libsrc'
>> make[1]: *** [all-recursive] Error 1
>> make[1]: Leaving directory `/home/jeffremt/tools/cig/v1.5-stable'
>> make: *** [all] Error 2
>>
>>
>> _______________________________________________
>> CIG-SHORT mailing list
>> CIG-SHORT at geodynamics.org
>> http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short
>>
>>
>
>
> --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which their
> experiments lead.
> -- Norbert Wiener
>

-- 
What most experimenters take for granted before they begin their experiments
is infinitely more interesting than any results to which their experiments
lead.
-- Norbert Wiener
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://geodynamics.org/pipermail/cig-short/attachments/20101020/31819a17/attachment-0001.htm 