[CIG-SHORT] Trouble Updating PyLith Pt. 2
Jeffrey Thompson
jeffremt at gmail.com
Mon Sep 13 14:44:23 PDT 2010
Hi CIG-Short,
I followed the advice Brad gave me, and I was able to "make" and "make
install" PyLith. However, when I run pylith, I get the error shown below.
This happens independent of the problem I try to run, and occurs when I use
"pylith --help" or "pylith --version" or even just "pylith." The error
message is:
/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/inventory/odb/Curator.py:200:
UserWarning: Module spatialdata was already imported from
/home/jeffremt/tools/cig/gcc-4.1.1_64/lib64/python2.5/site-packages/spatialdata/__init__.pyc,
but /home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages is
being added to sys.path
from pkg_resources import resource_listdir, resource_isdir,
resource_exists, resource_filename, Requirement
/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/inventory/odb/Curator.py:200:
UserWarning: Module pylith was already imported from
/home/jeffremt/tools/cig/gcc-4.1.1_64/lib64/python2.5/site-packages/pylith/__init__.pyc,
but /home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages is
being added to sys.path
from pkg_resources import resource_listdir, resource_isdir,
resource_exists, resource_filename, Requirement
/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/inventory/odb/Curator.py:200:
UserWarning: Module pkg_resources was already imported from
/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/setuptools-0.6c9-py2.5.egg/pkg_resources.py,
but
/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/merlin-1.7.egg
is being added to sys.path
from pkg_resources import resource_listdir, resource_isdir,
resource_exists, resource_filename, Requirement
/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/inventory/odb/Curator.py:200:
UserWarning: Module site was already imported from
/usr/lib64/python2.5/site.pyc, but
/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/merlin-1.7.egg
is being added to sys.path
from pkg_resources import resource_listdir, resource_isdir,
resource_exists, resource_filename, Requirement
ERROR: An unexpected error occurred while tokenizing input
The following traceback may be corrupted or invalid
The error message is: ('EOF in multi-line statement', (12, 0))
ERROR: An unexpected error occurred while tokenizing input
The following traceback may be corrupted or invalid
The error message is: ('EOF in multi-line statement', (12, 0))
ERROR: An unexpected error occurred while tokenizing input
The following traceback may be corrupted or invalid
The error message is: ('EOF in multi-line statement', (12, 0))
ERROR: An unexpected error occurred while tokenizing input
The following traceback may be corrupted or invalid
The error message is: ('EOF in multi-line statement', (12, 0))
ERROR: An unexpected error occurred while tokenizing input
The following traceback may be corrupted or invalid
The error message is: ('EOF in multi-line statement', (13, 0))
Error in sys.excepthook:
Traceback (most recent call last):
File "/usr/lib/python2.5/site-packages/IPython/ultraTB.py", line 885, in
__call__
self.handler((etype, evalue, etb))
File "/usr/lib/python2.5/site-packages/IPython/ultraTB.py", line 875, in
handler
print >> Term.cerr, self.text(etype, evalue, etb)
File "/usr/lib/python2.5/site-packages/IPython/ultraTB.py", line 931, in
text
return VerboseTB.text(self,etype, value, tb,context=5)
File "/usr/lib/python2.5/site-packages/IPython/ultraTB.py", line 818, in
text
__IPYTHON__.hooks.synchronize_with_editor(filepath, lnum, 0)
NameError: global name '__IPYTHON__' is not defined
Original exception was:
Traceback (most recent call last):
File "/home/jeffremt/tools/cig/gcc-4.1.1_64/bin/pylith", line 39, in
<module>
start(applicationClass=PyLithApp)
File
"/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/applications/__init__.py",
line 41, in start
shell.run(**kwds)
File
"/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/applications/Shell.py",
line 125, in run
app.applyConfiguration(context)
File
"/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/inventory/Configurable.py",
line 74, in applyConfiguration
context.configureComponent(self)
File
"/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/inventory/ConfigContext.py",
line 68, in configureComponent
component.configureComponents(self)
File
"/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/inventory/Configurable.py",
line 119, in configureComponents
self.inventory.configureComponents(context)
File
"/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/inventory/Inventory.py",
line 99, in configureComponents
component.applyConfiguration(context)
File
"/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/inventory/Configurable.py",
line 74, in applyConfiguration
context.configureComponent(self)
File
"/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/inventory/ConfigContext.py",
line 68, in configureComponent
component.configureComponents(self)
File
"/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/inventory/Configurable.py",
line 119, in configureComponents
self.inventory.configureComponents(context)
File
"/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/inventory/Inventory.py",
line 99, in configureComponents
component.applyConfiguration(context)
File
"/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/inventory/Configurable.py",
line 74, in applyConfiguration
context.configureComponent(self)
File
"/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/inventory/ConfigContext.py",
line 68, in configureComponent
component.configureComponents(self)
File
"/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/inventory/Configurable.py",
line 119, in configureComponents
self.inventory.configureComponents(context)
File
"/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/inventory/Inventory.py",
line 99, in configureComponents
component.applyConfiguration(context)
File
"/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/inventory/Configurable.py",
line 74, in applyConfiguration
context.configureComponent(self)
File
"/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/inventory/ConfigContext.py",
line 68, in configureComponent
component.configureComponents(self)
File
"/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/inventory/Configurable.py",
line 119, in configureComponents
self.inventory.configureComponents(context)
File
"/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/inventory/Inventory.py",
line 99, in configureComponents
component.applyConfiguration(context)
File
"/home/jeffremt/tools/cig/gcc-4.1.1_64/lib/python2.5/site-packages/pythia-0.8.1.10-py2.5.egg/pyre/inventory/Configurable.py",
line 77, in applyConfiguration
self._configure()
File
"/home/jeffremt/tools/cig/gcc-4.1.1_64/lib64/python2.5/site-packages/pylith/meshio/OutputMatElastic.py",
line 83, in _configure
OutputManagerMesh._configure(self)
File
"/home/jeffremt/tools/cig/gcc-4.1.1_64/lib64/python2.5/site-packages/pylith/meshio/OutputManagerMesh.py",
line 73, in _configure
ModuleOutputManager.coordsys(self, self.inventory.coordsys)
File
"/home/jeffremt/tools/cig/gcc-4.1.1_64/lib64/python2.5/site-packages/pylith/meshio/meshio.py",
line 589, in coordsys
def coordsys(self, *args): return
_meshio.MeshOutputManager_coordsys(self, *args)
TypeError: in method 'MeshOutputManager_coordsys', argument 2 of type
'spatialdata::geocoords::CoordSys const *'
I've attached the config.log file from my configuration of PyLith just in
case that's helpful.
Thank you,
Jeff Thompson
California Institute of Technology
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