[CIG-SHORT] install problem

[Brad Aagaard]

As Matt mentioned the GLIBC error shows up when the Linux distribution 
you are using is several years old. You can use the CentOS binary 
instead which should work with CentOS 5 and RHEL 5 Linux distributions. 
Note that the PyLith binary will not work on more than a single compute 
node on a cluster. If you want to run PyLith on more than one compute 
node of a cluster, you need to build from source (we strongly recommend 
using the PyLith installer utility to do this). You should use the MPI 
version installed by the system administrator; this insures that MPI is 
setup to work with any special cluster hardware.

Brad


On 12/22/11 4:00 AM, 翁辉辉 wrote:
>
>
>
> hello!
>
>   I have some problem when I install the pylith-1.6.2-linux-x86_64.tgz on the cluster. The path is/home/hjs/wenghh/pylith/pylith-1.6.2-linux-x86_64 . When I run pylith,there are some error as follow :
>   Traceback (most recent call last):
>    File "/home/hjs/wenghh/pylith/pylith-1.6.2-linux-x86_64/bin/pylith", line 37, in<module>
>      from pylith.apps.PyLithApp import PyLithApp
>    File "/home/hjs/wenghh/pylith/pylith-1.6.2-linux-x86_64/lib/python2.6/site-packages/pylith/apps/PyLithApp.py", line 23, in<module>
>      from PetscApplication import PetscApplication
>    File "/home/hjs/wenghh/pylith/pylith-1.6.2-linux-x86_64/lib/python2.6/site-packages/pylith/apps/PetscApplication.py", line 27, in<module>
>      class PetscApplication(Application):
>    File "/home/hjs/wenghh/pylith/pylith-1.6.2-linux-x86_64/lib/python2.6/site-packages/pylith/apps/PetscApplication.py", line 41, in PetscApplication
>      from pylith.utils.PetscManager import PetscManager
>    File "/home/hjs/wenghh/pylith/pylith-1.6.2-linux-x86_64/lib/python2.6/site-packages/pylith/utils/PetscManager.py", line 29, in<module>
>      import pylith.utils.petsc as petsc
>    File "/home/hjs/wenghh/pylith/pylith-1.6.2-linux-x86_64/lib/python2.6/site-packages/pylith/utils/petsc.py", line 25, in<module>
>      _petsc = swig_import_helper()
>    File "/home/hjs/wenghh/pylith/pylith-1.6.2-linux-x86_64/lib/python2.6/site-packages/pylith/utils/petsc.py", line 21, in swig_import_helper
>      _mod = imp.load_module('_petsc', fp, pathname, description)
> ImportError: /lib64/tls/libc.so.6: version `GLIBC_2.7' not found (required by /home/hjs/wenghh/pylith/pylith-1.6.2-linux-x86_64/lib/libhdf5.so.6)
>
>    I set the .bashrc as follow :
> export PATH=/home/hjs/wenghh/pylith/pylith-1.6.2-linux-x86_64/bin:$PATH
> export LD_LIBRARY_PATH=/home/hjs/wenghh/pylith/pylith-1.6.2-linux-x86_64/lib:/home/hjs/wenghh/pylith/pylith-1.6.2-linux-i686/opt/petsc-dev/linux-gnu-cxx-opt/lib:${LD_LIBRARY_PATH}
> export PYTHONPATH=/home/hjs/wenghh/pylith/pylith-1.6.2-linux-x86_64/lib/python2.5/site-packages:$PYTHONPATH
>
>    Wish you have a good time
>    regards.
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