[CIG-SHORT] Problem when launching "pylith axialdisp.cfg"

[Brad Aagaard]

Christian-

Which version of PyLith are you using? Did you download the binary or 
build from source? If you built from source, did you use the PyLith 
Installer utility or build all the dependencies manually?

Brad

On 6/6/11 7:47 AM, Christian Baillard wrote:
> Hi,
>
> I'm following the pylith tutorial but in the first exercise there is a
> problem when I launch "pylith axialdisp.cfg"
> the error is:
>
> macbaillard:twotri3 baillard$ pylith axialdisp.cfg
>
> /Users/baillard/pylith/lib/python2.6/site-packages/merlin-1.7.egg/merlin/__init__.py:175:
> DeprecationWarning: the sets module is deprecated
> from sets import ImmutableSet
> /Users/baillard/pylith/lib/python2.6/site-packages/merlin-1.7.egg/merlin/__init__.py:175:
> DeprecationWarning: the sets module is deprecated
> from sets import ImmutableSet
> /Users/baillard/pylith/lib/python2.6/site-packages/merlin-1.7.egg/merlin/__init__.py:175:
> DeprecationWarning: the sets module is deprecated
> from sets import ImmutableSet
>  >>
> /Users/baillard/pylith/lib/python2.6/site-packages/pylith/utils/PetscManager.py:54:initialize
> -- petsc(info)
> -- Initializing PETSc.
>  >>
> /Users/baillard/pylith/lib/python2.6/site-packages/pylith/meshio/MeshIOObj.py:52:read
> -- meshioascii(info)
> -- Reading finite-element mesh
> mpinemesis(2320) malloc: *** error for object 0x102e5a0e0: pointer being
> freed was not allocated
> *** set a breakpoint in malloc_error_break to debug
> [macbaillard:02320] *** Process received signal ***
> [macbaillard:02320] Signal: Abort trap (6)
> [macbaillard:02320] Signal code: (0)
> [macbaillard:02320] [ 0] 2 libSystem.B.dylib 0x00007fff84de666a
> _sigtramp + 26
> [macbaillard:02320] [ 1] 3 libSystem.B.dylib 0x00007fff84d8b147
> tiny_malloc_from_free_list + 1196
> [macbaillard:02320] [ 2] 4 libSystem.B.dylib 0x00007fff84d8c6b5 free + 128
> [macbaillard:02320] [ 3] 5 libstdc++.6.dylib 0x00007fff86630eb3
> _ZNSt15basic_stringbufIcSt11char_traitsIcESaIcEE8overflowEi + 281
> [macbaillard:02320] [ 4] 6 libstdc++.6.dylib 0x00007fff86631c21
> _ZNSt15basic_streambufIcSt11char_traitsIcEE6xsputnEPKcl + 139
> [macbaillard:02320] [ 5] 7 libstdc++.6.dylib 0x0000000102dde3d5
> _ZSt16__ostream_insertIcSt11char_traitsIcEERSt13basic_ostreamIT_T0_ES6_PKS3_l
> + 453
> [macbaillard:02320] [ 6] 8 libstdc++.6.dylib 0x0000000102dde651
> _ZStlsISt11char_traitsIcEERSt13basic_ostreamIcT_ES5_PKc + 49
> [macbaillard:02320] [ 7] 9 libpylith.0.dylib 0x0000000101760800
> _ZN6pylith6meshio11MeshIOAscii5_readEv + 5040
> [macbaillard:02320] [ 8] 10 libpylith.0.dylib 0x0000000101750a66
> _ZN6pylith6meshio6MeshIO4readEPNS_8topology4MeshE + 54
> [macbaillard:02320] [ 9] 11 _meshiomodule.so 0x00000001030dddb4
> _wrap_MeshIO_read + 164
> [macbaillard:02320] [10] 12 Python 0x0000000100012ff3 PyObject_Call + 112
> [macbaillard:02320] [11] 13 Python 0x000000010009254e PyEval_EvalFrameEx
> + 20380
> [macbaillard:02320] [12] 14 Python 0x0000000100092cce PyEval_EvalCodeEx
> + 1803
> [macbaillard:02320] [13] 15 Python 0x00000001000348e1 PyClassMethod_New
> + 1748
> [macbaillard:02320] [14] 16 Python 0x0000000100012ff3 PyObject_Call + 112
> [macbaillard:02320] [15] 17 Python 0x00000001000229df PyClass_New + 1575
> [macbaillard:02320] [16] 18 Python 0x0000000100012ff3 PyObject_Call + 112
> [macbaillard:02320] [17] 19 Python 0x000000010009251a PyEval_EvalFrameEx
> + 20328
> [macbaillard:02320] [18] 20 Python 0x00000001000912e1 PyEval_EvalFrameEx
> + 15663
> [macbaillard:02320] [19] 21 Python 0x0000000100092cce PyEval_EvalCodeEx
> + 1803
> [macbaillard:02320] [20] 22 Python 0x000000010009135e PyEval_EvalFrameEx
> + 15788
> [macbaillard:02320] [21] 23 Python 0x0000000100092cce PyEval_EvalCodeEx
> + 1803
> [macbaillard:02320] [22] 24 Python 0x000000010003488f PyClassMethod_New
> + 1666
> [macbaillard:02320] [23] 25 Python 0x0000000100012ff3 PyObject_Call + 112
> [macbaillard:02320] [24] 26 Python 0x000000010009254e PyEval_EvalFrameEx
> + 20380
> [macbaillard:02320] [25] 27 Python 0x0000000100092cce PyEval_EvalCodeEx
> + 1803
> [macbaillard:02320] [26] 28 Python 0x000000010003488f PyClassMethod_New
> + 1666
> [macbaillard:02320] [27] 29 Python 0x0000000100012ff3 PyObject_Call + 112
> [macbaillard:02320] [28] 30 Python 0x000000010009254e PyEval_EvalFrameEx
> + 20380
> [macbaillard:02320] [29] 31 Python 0x0000000100092cce PyEval_EvalCodeEx
> + 1803
> [macbaillard:02320] *** End of error message ***
> --------------------------------------------------------------------------
> mpirun noticed that process rank 0 with PID 2320 on node
> macbaillard.ipgp.fr <http://macbaillard.ipgp.fr> exited on signal 6
> (Abort trap).
> --------------------------------------------------------------------------
> /Users/baillard/pylith/bin/nemesis: mpirun: exit 134
> /Users/baillard/pylith/bin/pylith: /Users/baillard/pylith/bin/nemesis:
> exit 1
>
> Could anybody help me with this? I work on Mac OSX
>
> Best regards,
>
> Christian Baillard, PhD student
> Laboratoire de Géosciences Marines
> Institut de Physique du Globe de Paris
> Bureau 335 - 1,rue Jussieu
> 75238 Paris cedex 05
> +33 (0)1 83 95 77 72
>
>
>
>
>
>
> _______________________________________________
> CIG-SHORT mailing list
> CIG-SHORT at geodynamics.org
> http://geodynamics.org/cgi-bin/mailman/listinfo/cig-short