[CIG-SHORT] Pylith install eror

[Birendra jha]

Hi Brad,

My system is Ubuntu 11.04 64-bit.
I removed all pylith files, started from a clean $HOME/build/pylith and $HOME/pylith directories. I changed the configure command as follows:

user at ubuntu:~/build/pylith$ /home/user/Documents/pylith-installer-1.6.3-0/configure --with-make-threads=1 --enable-mpi=openmpi --prefix=$HOME/pylith --enable-swig --enable-pcre

and I am getting error at nemesis build stage. Please see attached /build/pylith/config.log and /build/pylith/nemesis-build/config.log files.

On Terminal I see:

checking for Python.h... yes
checking whether -lpython2.7 is a shared library... no
configure: error: -lpython2.7 is not a shared library
make[3]: Entering directory `/home/user/build/pylith/nemesis-build'
make[3]: *** No targets specified and no makefile found.  Stop.
make[3]: Leaving directory `/home/user/build/pylith/nemesis-build'
make[2]: *** [nemesis] Error 2
make[2]: Leaving directory `/home/user/build/pylith'
make[1]: *** [installed_nemesis] Error 2
make[1]: Leaving directory `/home/user/build/pylith'
make: *** [installed_pylith] Error 2

In /build/pylith/nemesis-build/config.log I see:

/usr/lib/libmpi.so: undefined reference to `MPL_trid'
/usr/lib/libmpi.so: undefined reference to `MPL_trvalid'
/usr/lib/libmpi.so: undefined reference to `MPL_env2int'
/usr/lib/libmpi.so: undefined reference to `MPL_trrealloc'

Looks like I am again getting MPI related errors.

Please help.

Thanks
Birendra

--- On Tue, 4/3/12, Brad Aagaard <baagaard at usgs.gov> wrote:

> From: Brad Aagaard <baagaard at usgs.gov>
> Subject: Re: Pylith install eror
> To: "Birendra jha" <bjha7333 at yahoo.com>
> Cc: cig-short at geodynamics.org
> Date: Tuesday, April 3, 2012, 1:06 AM
> Birendra,
> 
> Did you clean out any old PyLith builds that may be in the
> path? There 
> are issues with distutils/merlin and Python 2.7 that prevent
> pythia from 
> installing (infinite loop in a python function). The
> workaround is 
> simply to remove merlin and then install pythia.
> 
> Brad
> 
> On 4/1/12 1:58 AM, Birendra jha wrote:
> > Dear developers,
> >
> > I am getting following error while installing Pylith
> from the installer:
> >
> > checking for Python.h... yes
> > checking whether -lpython2.7 is a shared library...
> yes
> > configure: downloading missing Python dependencies
> > configure: error: in
> `/home/user/build/pylith/nemesis-build':
> > configure: error: cannot download missing Python
> dependencies
> > See `config.log' for more details
> > make[3]: Entering directory
> `/home/user/build/pylith/nemesis-build'
> > make[3]: *** No targets specified and no makefile
> found.  Stop.
> > make[3]: Leaving directory
> `/home/user/build/pylith/nemesis-build'
> > make[2]: *** [nemesis] Error 2
> > make[2]: Leaving directory `/home/user/build/pylith'
> > make[1]: *** [installed_nemesis] Error 2
> > make[1]: Leaving directory `/home/user/build/pylith'
> > make: *** [installed_pylith] Error 2
> >
> > I have attached the pylith/nemesis-build/config.log and
> pylith/config.log
> >
> > I am getting this error during nemesis build. I had to
> install some missing packages (gfortran, python-dev, mpich2
> and its 2 dev libraries, libcr-dev) along the way after I
> ran make for the first time.
> > Do I need to do a fresh install again?
> >
> > Thanks
> > Birendra
> 
>
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