[CIG-SHORT] Pylith install error

[Birendra jha]

Brad,

Yes, I did run source setup.sh after running configure. Following is the output at Terminal right now:

user at ubuntu:~/build/pylith$ echo $LD_LIBRARY_PATH
/home/user/pylith/lib:/home/user/pylith/lib64

Thanks
Birendra

--- On Tue, 4/3/12, Brad Aagaard <baagaard at usgs.gov> wrote:

> From: Brad Aagaard <baagaard at usgs.gov>
> Subject: Re: Pylith install eror
> To: "Birendra jha" <bjha7333 at yahoo.com>
> Cc: cig-short at geodynamics.org
> Date: Tuesday, April 3, 2012, 2:04 AM
> Birendra,
> 
> The undefined symbols are coming from /usr/lib/libmpi.so.
> This should 
> not be happening if the configure is detecting the openmpi
> that was 
> built. I don't see LD_LIBRARY_PATH in your config.log
> environment. Did 
> you run "source setup.sh" after running the pylith-installer
> configure?
> 
> Brad
> 
> 
> 
> On 4/2/12 1:07 PM, Birendra jha wrote:
> > Hi Brad,
> >
> > My system is Ubuntu 11.04 64-bit.
> > I removed all pylith files, started from a clean
> $HOME/build/pylith and $HOME/pylith directories. I changed
> the configure command as follows:
> >
> > user at ubuntu:~/build/pylith$
> /home/user/Documents/pylith-installer-1.6.3-0/configure
> --with-make-threads=1 --enable-mpi=openmpi
> --prefix=$HOME/pylith --enable-swig --enable-pcre
> >
> > and I am getting error at nemesis build stage. Please
> see attached /build/pylith/config.log and
> /build/pylith/nemesis-build/config.log files.
> >
> > On Terminal I see:
> >
> > checking for Python.h... yes
> > checking whether -lpython2.7 is a shared library... no
> > configure: error: -lpython2.7 is not a shared library
> > make[3]: Entering directory
> `/home/user/build/pylith/nemesis-build'
> > make[3]: *** No targets specified and no makefile
> found.  Stop.
> > make[3]: Leaving directory
> `/home/user/build/pylith/nemesis-build'
> > make[2]: *** [nemesis] Error 2
> > make[2]: Leaving directory `/home/user/build/pylith'
> > make[1]: *** [installed_nemesis] Error 2
> > make[1]: Leaving directory `/home/user/build/pylith'
> > make: *** [installed_pylith] Error 2
> >
> > In /build/pylith/nemesis-build/config.log I see:
> >
> > /usr/lib/libmpi.so: undefined reference to `MPL_trid'
> > /usr/lib/libmpi.so: undefined reference to
> `MPL_trvalid'
> > /usr/lib/libmpi.so: undefined reference to
> `MPL_env2int'
> > /usr/lib/libmpi.so: undefined reference to
> `MPL_trrealloc'
> >
> > Looks like I am again getting MPI related errors.
> >
> > Please help.
> >
> > Thanks
> > Birendra
> >
> > --- On Tue, 4/3/12, Brad Aagaard<baagaard at usgs.gov> 
> wrote:
> >
> >> From: Brad Aagaard<baagaard at usgs.gov>
> >> Subject: Re: Pylith install eror
> >> To: "Birendra jha"<bjha7333 at yahoo.com>
> >> Cc: cig-short at geodynamics.org
> >> Date: Tuesday, April 3, 2012, 1:06 AM
> >> Birendra,
> >>
> >> Did you clean out any old PyLith builds that may be
> in the
> >> path? There
> >> are issues with distutils/merlin and Python 2.7
> that prevent
> >> pythia from
> >> installing (infinite loop in a python function).
> The
> >> workaround is
> >> simply to remove merlin and then install pythia.
> >>
> >> Brad
> >>
> >> On 4/1/12 1:58 AM, Birendra jha wrote:
> >>> Dear developers,
> >>>
> >>> I am getting following error while installing
> Pylith
> >> from the installer:
> >>>
> >>> checking for Python.h... yes
> >>> checking whether -lpython2.7 is a shared
> library...
> >> yes
> >>> configure: downloading missing Python
> dependencies
> >>> configure: error: in
> >> `/home/user/build/pylith/nemesis-build':
> >>> configure: error: cannot download missing
> Python
> >> dependencies
> >>> See `config.log' for more details
> >>> make[3]: Entering directory
> >> `/home/user/build/pylith/nemesis-build'
> >>> make[3]: *** No targets specified and no
> makefile
> >> found.  Stop.
> >>> make[3]: Leaving directory
> >> `/home/user/build/pylith/nemesis-build'
> >>> make[2]: *** [nemesis] Error 2
> >>> make[2]: Leaving directory
> `/home/user/build/pylith'
> >>> make[1]: *** [installed_nemesis] Error 2
> >>> make[1]: Leaving directory
> `/home/user/build/pylith'
> >>> make: *** [installed_pylith] Error 2
> >>>
> >>> I have attached the
> pylith/nemesis-build/config.log and
> >> pylith/config.log
> >>>
> >>> I am getting this error during nemesis build. I
> had to
> >> install some missing packages (gfortran,
> python-dev, mpich2
> >> and its 2 dev libraries, libcr-dev) along the way
> after I
> >> ran make for the first time.
> >>> Do I need to do a fresh install again?
> >>>
> >>> Thanks
> >>> Birendra
> >>
> >>
> 
>