[CIG-SHORT] Pylith Install Error

[Brad Aagaard]

Niz,

Please do not send large attachments to cig-short at geodynamics.org.

See the README file in the top-level PyLith source directory with the 
changes related to migrating parameters from PyLith 1.5 to 1.6 and 1.6 
to 1.7. The errors you are getting are related to the changes associated 
with spatialdata labels documented in the README.

For the benchmarks, we try to keep the files in the repository 
http://geodynamics.org/svn/cig/short/3D/PyLith/benchmarks/trunk
up to date, but we do sometimes miss some files. The files for tpv210 in 
the repository are up-to-date.

Regards,
Brad

On 08/24/2012 02:01 AM, Niz wrote:
> the Benchmark is here.
>
> 2012/8/24 Niz <niz.moussatat at gmail.com>
>
>> Brad
>>
>> I went back and fetched old but simple Birendra's benchmarks to test
>> dynamic friction with the binaries first. It is not taking the fault
>> friction parameters at all, with error message.
>> --------------------------------------------
>> in 1.6 versions ....
>> /home/tora/Downloads/pylith-1.6.3-linux-x86_64/lib/python2.6/site-packages/merlin-1.7.egg/merlin/__init__.py:175:
>> DeprecationWarning: the sets module is deprecated
>> ...
>> ....
>> ValueError: Error while configuring friction model (slipweakening,
>> friction):
>> Error while configuring friction model (slipweakening, friction):
>> Descriptive label for friction model not specified.
>> Backtrace - Component slipweakening, friction
>> Backtrace - Component faultcohesivedyn, fault
>> Backtrace - Component interfaces
>> Backtrace - Component timedependent, problem
>> Backtrace - Component pylithapp
>> ---------------------
>> and in 1,7 versions
>>    File "/home/tora/Downloads/pylith-1.7.1-linux-x86_64/bin/pylith", line
>> 39, in <module>
>>      start(applicationClass=PyLithApp)
>>    File
>> "/home/tora/Downloads/pylith-1.7.1-linux-x86_64/lib/python2.7/site-packages/pythia-0.8.1.14-py2.7.egg/pyre/applications/__init__.py",
>> line 41, in start
>>      shell.run(**kwds)
>>    File
>> "/home/tora/Downloads/pylith-1.7.1-linux-x86_64/lib/python2.7/site-packages/pythia-0.8.1.14-py2.7.egg/pyre/applications/Shell.py",
>> line 125, in run
>>      app.applyConfiguration(context)
>>    File
>> "/home/tora/Downloads/pylith-1.7.1-linux-x86_64/lib/python2.7/site-packages/pythia-0.8.1.14-py2.7.egg/pyre/inventory/Configurable.py",
>> line 84, in applyConfiguration
>>      raise ValueError("%s\nBacktrace - Component %s" % (err.message,
>> aliases))
>> ValueError: Error while configuring friction model (slipweakening,
>> friction):
>> Error while configuring friction model (slipweakening, friction):
>> Descriptive label for friction model not specified.
>> Backtrace - Component slipweakening, friction
>> Backtrace - Component faultcohesivedyn, fault
>> Backtrace - Component interfaces
>> Backtrace - Component timedependent, problem
>> Backtrace - Component pylithapp
>> --------------------------------------------
>> This is not happening with older versions, like the 1.5, and I see no
>> changes in fault definition commands in 1.7 manual.
>>
>> Regards
>>
>>
>>
>> 2012/8/23 Niz <niz.moussatat at gmail.com>
>>
>>> Thank you Brad.
>>> all files you indicated were there, and I still executed in proj4-build
>>> the make clean/make/make install
>>> it went without issues. and joined the .log it gave me
>>> I went back to build/pylith/ and did make, the process continued and ran
>>> several tests.
>>> And ended.
>>>
>>> I couldn't test  old codes, since it seems they fail both the installed
>>> result as well as the binaries.
>>> I shall look into it later and confirm everything is ok.
>>>
>>> Regards.
>>>
>>>
>>>
>>>
>>>
>>> 2012/8/23 Brad Aagaard <baagaard at usgs.gov>
>>>
>>>> Niz,
>>>>
>>>> If Proj4 was installed correctly, you should see libproj.so in
>>>> $PREFIX/lib, proj_api.h in $PREFIX/include, and a proj directory in
>>>> $PREFIX/share.
>>>>
>>>> If any of these are missing, then go to the proj4-build directory and
>>>> run "make clean", then "make", and "make install". If you encounter any
>>>> errors, send us the config.log from proj4-build and the complete error
>>>> message.
>>>>
>>>> Regards,
>>>> Brad
>>>>
>>>>
>>>>
>>>> On 08/23/2012 12:54 AM, Niz wrote:
>>>>
>>>>> Your last suggestion worked, and pylith resumed installation [folders
>>>>> contain the list of files you indicated previously].
>>>>> I stumbled later:
>>>>>       checking dynamic linker characteristics... (cached) GNU/Linux ld.so
>>>>>       checking how to hardcode library paths into programs... immediate
>>>>>       checking for pj_init_plus in -lproj... no
>>>>>       configure: error: Proj4 library not found; try LDFLAGS="-L<Proj4
>>>>> lib
>>>>> dir>"
>>>>>
>>>>> there is in build/pylith/ 2  proj4* folders, but non of them contains a
>>>>> lib/?
>>>>>
>>>>> Regards
>>>>>
>>>>>
>>>>>
>>>>>
>>
>>
>> --
>> *******************************************************
>> MOUSSATAT Nizar - PhD Student
>> ISTerre - Maison des Geosiences - Equipe risques
>> Bureau 1121 (1er étage)
>> Université de Grenoble, 38041 Grenoble Cedex 9, France
>> E-mail: nizar.moussatat at obs.ujf-grenoble.fr
>>
>> Tel Bureau: +33 (0)4 76 63 51 81
>> Mobile       +33 (0) 6 43 59 39 44
>> Home        +33 (0) 4 80 38 45 93
>> *******************************************************
>>
>>
>
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