No subject
Fri Jul 27 01:15:23 PDT 2012
Both the standard output and standard error streams will be retained on the=
execution host.
So I tried:
[pylithapp]
scheduler =3D pbs
[pylithapp.pbs]
shell =3D /bin/bash
qsub-options =3D -V -m n -k oe -q geom
Two problems:
1. Since the execution host could be different from the computer with run f=
older, this does not completely solve the problem.
2. Even after I managed to find the execution host's scratch folder I don't=
see my stdout stderr files. Why is that?
Is there a more elegant/simpler way to do this through pylithapp.cfg option=
s?
Thanks a lot
Birendra
--_000_724CB4C7D6856F479F58798CFA777A8C0FC2E856OC11expo28excha_
Content-Type: text/html; charset="iso-8859-1"
Content-Transfer-Encoding: quoted-printable
<html dir=3D"ltr">
<head>
<meta http-equiv=3D"Content-Type" content=3D"text/html; charset=3Diso-8859-=
1">
<style id=3D"owaParaStyle" type=3D"text/css">P {margin-top:0;margin-bottom:=
0;}</style>
</head>
<body ocsi=3D"0" fpstyle=3D"1">
<div style=3D"direction: ltr;font-family: Tahoma;color: #000000;font-size: =
10pt;">Hey Birendra, I'm making progress on the problem now after the messa=
ge from Surendra. With a bit of luck I can update you later today.<br=
>
<br>
Lucas<br>
<div style=3D"font-family: Times New Roman; color: #000000; font-size: 16px=
">
<hr tabindex=3D"-1">
<div style=3D"direction: ltr;" id=3D"divRpF620145"><font size=3D"2" color=
=3D"#000000" face=3D"Tahoma"><b>From:</b> cig-short-bounces at geodynamics.org=
[cig-short-bounces at geodynamics.org] on behalf of Birendra jha [bjha7333 at ya=
hoo.com]<br>
<b>Sent:</b> Sunday, March 17, 2013 14:08<br>
<b>To:</b> cig-short at geodynamics.org<br>
<b>Subject:</b> [CIG-SHORT] stdout stderr of PBS parallel run<br>
</font><br>
</div>
<div></div>
<div>
<table border=3D"0" cellpadding=3D"0" cellspacing=3D"0">
<tbody>
<tr>
<td style=3D"font:inherit" valign=3D"top">
<div>Hi</div>
<div> </div>
<div>When I run pylith in parallel using PBS queue system, the stdout.=
txt and stderr.txt are created in the run folder AFTER the run is over. I w=
ant to see these files during the simulation, especially stdout.txt. What o=
ption should I use in the pylithapp.cfg?</div>
<div> </div>
<div>From man qsub, I found that -k oe means </div>
<div>Both the standard output and standard error streams will be retained o=
n the execution host.</div>
<div> </div>
<div>So I tried:</div>
<div> </div>
<div>[pylithapp]<br>
scheduler =3D pbs<br>
[pylithapp.pbs]<br>
shell =3D /bin/bash<br>
qsub-options =3D -V -m n -k oe -q geom</div>
<div> </div>
<div>Two problems: </div>
<div>1. Since the execution host could be different from the computer with =
run folder, this does not completely solve the problem.</div>
<div>2. Even after I managed to find the execution host's scratch folder I =
don't see my stdout stderr files. Why is that?</div>
<div> </div>
<div>Is there a more elegant/simpler way to do this through pylithapp.=
cfg options?
</div>
<div> </div>
<div>Thanks a lot</div>
<div>Birendra</div>
<div> </div>
</td>
</tr>
</tbody>
</table>
</div>
</div>
</div>
</body>
</html>
--_000_724CB4C7D6856F479F58798CFA777A8C0FC2E856OC11expo28excha_--
More information about the CIG-SHORT
mailing list