[CIG-SHORT] pylith1.6.3 install error

[Brad Aagaard]

Birendra,

Change "ostringstream" to "std::ostringstream".

Brad

On 3/27/13 9:18 AM, Birendra jha wrote:
> Hi Brad
>
> I am getting following error on DataWriter during compile. I remember seeing this earlier but I don't know how to search the mailing list archive:
>
> In file included from ../../../pylith-1.6.3/libsrc/pylith/meshio/DataWriter.hh:151,
>                   from ../../../pylith-1.6.3/libsrc/pylith/meshio/DataWriterHDF5.hh:45,
>                   from ../../../pylith-1.6.3/libsrc/pylith/problems/Formulation.cc:500:
> ../../../pylith-1.6.3/libsrc/pylith/meshio/DataWriter.cc: In member function ‘virtual void pylith::meshio::DataWriter<mesh_type, field_type>::open(const mesh_type&, int, const char*, int)’:
> ../../../pylith-1.6.3/libsrc/pylith/meshio/DataWriter.cc:77: error: reference to ‘ostringstream’ is ambiguous
> /dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/include/sieve/ALE_exception.hh:8: error: candidates are: typedef struct std::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> > ostringstream
> /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/iosfwd:134: error:                 typedef struct std::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> > std::ostringstream
> ../../../pylith-1.6.3/libsrc/pylith/meshio/DataWriter.cc:77: error: reference to ‘ostringstream’ is ambiguous
> /dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/pylith/include/sieve/ALE_exception.hh:8: error: candidates are: typedef struct std::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> > ostringstream
> /usr/lib/gcc/x86_64-redhat-linux/4.4.6/../../../../include/c++/4.4.6/iosfwd:134: error:                 typedef struct std::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> > std::ostringstream
> ../../../pylith-1.6.3/libsrc/pylith/meshio/DataWriter.cc:77: error: expected ‘;’ before ‘s’
> ../../../pylith-1.6.3/libsrc/pylith/meshio/DataWriter.cc:78: error: ‘s’ was not declared in this scope
> make[4]: *** [Formulation.lo] Error 1
> make[4]: Leaving directory `/nm/siful2/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/build/pylith/pylith-build/libsrc/pylith'
> make[3]: *** [all-recursive] Error 1
> make[3]: Leaving directory `/nm/siful2/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/build/pylith/pylith-build/libsrc/pylith'
> make[2]: *** [all-recursive] Error 1
> make[2]: Leaving directory `/nm/siful2/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/build/pylith/pylith-build/libsrc'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory `/nm/siful2/dbstudi5/DBIPET3/PRJ_RD_SIM_102011/Tools/Pylith/build/pylith/pylith-build'
> make: *** [all] Error 2
>
> Please help.
>
> Birendra
>
>
> --- On Wed, 3/27/13, Brad Aagaard <baagaard at usgs.gov> wrote:
>
>> From: Brad Aagaard <baagaard at usgs.gov>
>> Subject: Re: [CIG-SHORT] pylith1.6.3 install error
>> To: cig-short at geodynamics.org
>> Date: Wednesday, March 27, 2013, 8:34 PM
>> Birendra,
>>
>> This error suggests incompatibilities in the Python being
>> used when
>> building PyLith and that used to build spatialdata. Check
>> the config.log
>> from configuring spatialdata and config.log from configuring
>> PyLith and
>> make sure PYTHON is set to the same binary. Note that the
>> paths for the
>> tests are set at the time of running configure, not your
>> current paths.
>>
>> Regards,
>> Brad
>>
>> On 3/27/13 6:26 AM, Birendra jha wrote:
>>> Dear Pylith developers
>>>
>>> I am trying to install pylith-1.6.3. I need this
>> version specifically and I have installed it before without
>> any problem.
>>>
>>> I get following error related to spatialdata. Please
>> help:
>>>
>>> N6pylith2bc21TestBoundaryConditionE::testLabel : OK
>>>
>> N6pylith2bc27TestBoundaryConditionPointsE::testGetPoints :
>> OK
>>> N6pylith2bc17TestTimeDependentE::testDBInitial : OK
>>> N6pylith2bc17TestTimeDependentE::testDBRate : OK
>>> N6pylith2bc17TestTimeDependentE::testDBChange : OK
>>> N6pylith2bc17TestTimeDependentE::testDBTimeHistory :
>> OK
>>>
>> N6pylith2bc17TestTimeDependentE::testVerifyConfiguration :
>> OK
>>> N6pylith2bc23TestTimeDependentPointsE::testBCDOF : OK
>>> N6pylith2bc23TestTimeDependentPointsE::testGetLabel :
>> OK
>>>
>> N6pylith2bc23TestTimeDependentPointsE::testQueryDatabaseslt-testbc:
>> ../../spatialdata-1.8.1/libsrc/units/Parser.cc:36:
>> spatialdata::units
>>> ::Parser::Parser(): Assertion `0 != mod' failed.
>>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>>> [0]PETSC ERROR: Caught signal number 11 SEGV:
>> Segmentation Violation, probably memory access out of range
>>>
>>>
>>> thanks
>>> Birendra
>>>
>>>
>>>
>>> _______________________________________________
>>> CIG-SHORT mailing list
>>> CIG-SHORT at geodynamics.org
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>>>
>>
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