[CIG-SHORT] Error Installing Pylith on Cluster

[Xiao Ma]

Hi,
Brad- I am using an stalled version which is on the my campus cluster.
I am forwarding the following message from the Administer of the cluster
*********************************************************
Hi Xiao,

Open MPI requires libxml2 to be available at build time (so I assume you are
using the "DESKTOP-LINUX-OPENMPI" option in the attached INSTALL document).
libxml2 is available via modules:

module load libxml2/2.9.1

Your software build also requires unzip, load it with:

module load unzip/unzip60

I should mention that a generic build of Open MPI may not run correctly when
running on multiple nodes in a batch job on the campus cluster. You can
check
this once you have your software installed. Also, the version of Open MPI
that
Pylith used is 1.4.5, which is old. So I tried to build Pylith using the
Open
MPI 1.6.5 built with the Intel compiler and Python 2.7.8 already on the
system
(following the "DEFAULT" option in the INSTALL document):

module load openmpi/1.6.5-intel-14.0

module load python/2.7.8

./configure CC=icc CXX=icpc FC=ifort --with-make-threads=2
--enable-force-install --prefix= …
make

Unfortunately, I got the error:
ifort: error #10236: File not found: 'libnetcdff.so.5'

I did a google search, and found a discussion at
https://geodynamics.org/pipermail/cig-short/2014-October/001861.html. This
references the INSTALL file for the solution, but that is already in
libtool.

Thanks,

Susan
Susan John
Campus Cluster User Services
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Thanks,
Xiao
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