[CIG-SHORT] Running on cluster

[Ma, Xiao]

Hi,
I am running pylith on a cluster.
Here is the input part :
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[pylithapp]
scheduler = pbs
[pylithapp.pbs]
shell = /bin/bash
# Export all environment variables to the batch job
# Send email to johndoe at mydomain.org when the job begins, ends, or aborts
qsub-options = -V -m bea -M xiaoma5 at illinois.edu
[pylithapp.launcher]
command = mpirun -np ${nodes} -machinefile ${PBS_NODEFILE}

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Error message
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Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/home/xiaoma5/project-cse/pylith-1.9.0-linux-x86_64/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/schedulers/__init__.py", line 53, in jobstart
    kwds = kwds)
  File "/home/xiaoma5/project-cse/pylith-1.9.0-linux-x86_64/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/applications/__init__.py", line 41, in start
    shell.run(**kwds)
  File "/home/xiaoma5/project-cse/pylith-1.9.0-linux-x86_64/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/applications/Shell.py", line 143, in run
    method(*args, **kwds)
  File "/home/xiaoma5/project-cse/pylith-1.9.0-linux-x86_64/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/applications/SuperScript.py", line 47, in execute
    self.subscript = self.createSubscript(subscriptName)
  File "/home/xiaoma5/project-cse/pylith-1.9.0-linux-x86_64/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/applications/AppRunner.py", line 25, in createSubscript
    cls = loadObject(name)
  File "/home/xiaoma5/project-cse/pylith-1.9.0-linux-x86_64/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/util/__init__.py", line 54, in loadObject
    obj = __import__(module, globals(), globals(), ['__name__'])
  File "/home/xiaoma5/project-cse/pylith-1.9.0-linux-x86_64/lib/python2.7/site-packages/pylith/apps/PyLithApp.py", line 23, in <module>
    from PetscApplication import PetscApplication
  File "/home/xiaoma5/project-cse/pylith-1.9.0-linux-x86_64/lib/python2.7/site-packages/pylith/apps/PetscApplication.py", line 27, in <module>
    class PetscApplication(Application):
  File "/home/xiaoma5/project-cse/pylith-1.9.0-linux-x86_64/lib/python2.7/site-packages/pylith/apps/PetscApplication.py", line 41, in PetscApplication
    from pylith.utils.PetscManager import PetscManager
  File "/home/xiaoma5/project-cse/pylith-1.9.0-linux-x86_64/lib/python2.7/site-packages/pylith/utils/PetscManager.py", line 29, in <module>
    import pylith.utils.petsc as petsc
  File "/home/xiaoma5/project-cse/pylith-1.9.0-linux-x86_64/lib/python2.7/site-packages/pylith/utils/petsc.py", line 25, in <module>
    _petsc = swig_import_helper()
  File "/home/xiaoma5/project-cse/pylith-1.9.0-linux-x86_64/lib/python2.7/site-packages/pylith/utils/petsc.py", line 21, in swig_import_helper
    _mod = imp.load_module('_petsc', fp, pathname, description)
ImportError: /usr/lib64/libgfortran.so.3: version `GFORTRAN_1.4' not found (required by /home/xiaoma5/project-cse/pylith-1.9.0-linux-x86_64/lib/libpetsc.so)
----------------------------------------
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The program is running when I am not using the cluster, so there must be something not right in this cluster command lines.
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%%Command Lines:

pylith test1.cfg --job.queue=test \
--job.name=test1 --job.stdout=example1.log --job.stderr=example1.err \
--job.walltime=5*minute \
--nodes=4

I will really appriciate your help
Best,
Xiao
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