[CIG-SHORT] Pylith error in initializing integrators

[Brad Aagaard]

If you are using v1.9.0 on a Darwin system, then you are getting an 
abort error message rather than the real error message due to a compiler 
bug. We have updated the compiler on the buildbot so that this won't be 
a problem in future releases. With the switch to git and major changes 
to PETSc that are incompatible with PyLith v1.9.0, it would take 
significant effort to do another binary release for v1.9.0. Instead, we 
hope to release v2.0 in the next couple of weeks.

Regards,
Brad


On 03/05/2014 04:29 PM, Jiangzhi Chen wrote:
> Thank you Brad this fixes the error. One more question, what option
> should I use in pylith to see this kind of error?
>
> Jiangzhi
> On Wed 05 Mar 2014 04:12:00 PM PST, Brad Aagaard wrote:
>> Here is the error:
>>
>> RuntimeError: Could not find value reverse-slip in spatial database
>> Final slip. Available values are:
>>   left-lateral-slip
>>   fault-opening
>>
>> Brad
>>
>>
>> On 03/05/2014 03:01 PM, Jiangzhi Chen wrote:
>>> Hello everyone,
>>>
>>> I am running a modified version of example/2d/subduction where I extrude
>>> the 2d mesh to 3d. I get an error in initializing integrators when I run
>>> step01. I think the error may come from some bad boundary conditions.
>>> The error reads:
>>>
>>>       >>
>>>
>>> /usr/local/src/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:468:_setupInterfaces
>>>
>>>
>>>
>>>       -- implicit(info)
>>>       -- Added interface condition 'fault_slabtop' as an integrator.
>>>       >>
>>>
>>> /usr/local/src/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:188:preinitialize
>>>
>>>
>>>
>>>       -- implicit(info)
>>>       -- Pre-initializing output.
>>>       >>
>>>
>>> /usr/local/src/pylith/lib/python2.7/site-packages/pylith/problems/Problem.py:150:verifyConfiguration
>>>
>>>
>>>
>>>       -- timedependent(info)
>>>       -- Verifying compatibility of problem configuration.
>>>       >>
>>>
>>> /usr/local/src/pylith/lib/python2.7/site-packages/pylith/problems/TimeDependent.py:117:initialize
>>>
>>>
>>>
>>>       -- timedependent(info)
>>>       -- Initializing problem.
>>>       >>
>>>
>>> /usr/local/src/pylith/lib/python2.7/site-packages/pylith/problems/Formulation.py:500:_initialize
>>>
>>>
>>>
>>>       -- implicit(info)
>>>       -- Initializing integrators.
>>>     [0]0:Return code = 0, signaled with Abort trap
>>>
>>> I know that this is not the read error message but I do not know where
>>> to find the real one. I attached all the files.
>>>
>>> Thank you,
>>>
>>> Jiangzhi
>>>
>>>
>>>
>>>
>>>
>>>
>>> _______________________________________________
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>>>
>>