[CIG-SHORT] help: Error Occurred while adjusting topology to create cohesive cells

[Maxfield Longchamp]

Hi Brad, 

Thanks for a fast response. I'm using Pylith 2.1.0. The error message is below, along with the section of output preceding it. 

Best, 
 Maxfield



 >> /Users/Shared/pylith/lib/python2.7/site-packages/pylith/topology/MeshGenerator.py:125:_adjustTopology
 -- meshimporter(info)
 -- Adjusting topology for fault 'ridge_negx' with 8507 vertices.

[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Petsc has generated inconsistent data
[0]PETSC ERROR: Could not classify all cells connected to the fault
[0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.5.3-2251-gb193602  GIT Date: 2015-02-19 19:20:25 -0600
[0]PETSC ERROR: /Users/Shared/pylith/bin/mpinemesis on a arch-pylith-gcc-opt named itsloan57221.local by loaner Sun Dec 27 16:30:32 2015
[0]PETSC ERROR: Configure options --useThreads=0 --prefix=/Users/buildbot/install/pylith_darwin_10.6_binbot --download-fblaslapack=1 --with-c2html=0 --with-hwloc=0 --CXXFLAGS=-DMPICH_IGNORE_CXX_SEEK --with-clanguage=C --with-mpicompilers=1 --with-debugging=0 --download-chaco=1 --download-ml=1 --with-hdf5=1 --with-hdf5-dir=/Users/buildbot/install/pylith_darwin_10.6_binbot --with-x=0 --with-ssl=0 --with-shared-libraries=1
[0]PETSC ERROR: #1 DMPlexLabelCohesiveComplete() line 1556 in /Users/buildbot/slave/build/pylith_darwin_10.6_binbot/PETSc/petsc-pylith/binaries/src/dm/impls/plex/plexsubmesh.c
[0]PETSC ERROR: #2 static void pylith::faults::CohesiveTopology::create(pylith::topology::Mesh*, const pylith::topology::Mesh&, PetscDMLabel, int, int&, int&, int&, bool)() line 151 in faults/CohesiveTopology.cc
Fatal error. Calling MPI_Abort() to abort PyLith application.
Traceback (most recent call last):
  File "/Users/Shared/pylith/lib/python2.7/site-packages/pylith/apps/PetscApplication.py", line 64, in onComputeNodes
    self.main(*args, **kwds)
  File "/Users/Shared/pylith/lib/python2.7/site-packages/pylith/apps/PyLithApp.py", line 112, in main
    mesh = self.mesher.create(self.problem.normalizer, interfaces)
  File "/Users/Shared/pylith/lib/python2.7/site-packages/pylith/topology/MeshImporter.py", line 120, in create
    self._adjustTopology(mesh, faults)
  File "/Users/Shared/pylith/lib/python2.7/site-packages/pylith/topology/MeshGenerator.py", line 127, in _adjustTopology
    interface.adjustTopology(mesh, firstFaultVertex, firstLagrangeVertex, firstFaultCell)
  File "/Users/Shared/pylith/lib/python2.7/site-packages/pylith/faults/faults.py", line 342, in adjustTopology
    def adjustTopology(self, *args): return _faults.FaultCohesive_adjustTopology(self, *args)
RuntimeError: Error occurred while adjusting topology to create cohesive cells for fault 'ridge_negx'.
Error detected while in PETSc function.
application called MPI_Abort(MPI_COMM_WORLD, -1) - process 0
/Users/Shared/pylith/bin/nemesis: mpirun: exit 255
/Users/Shared/pylith/bin/pylith: /Users/Shared/pylith/bin/nemesis: exit 1














----- Original Message -----
From: "Brad Aagaard" <baagaard at usgs.gov>
To: cig-short at geodynamics.org
Sent: Saturday, December 26, 2015 2:39:37 PM
Subject: Re: [CIG-SHORT] help: Error Occurred while adjusting topology to create cohesive cells

Maxfield,

We need the entire error message along with the specific version of 
PyLith that you are using.

Brad


On 12/26/15 10:05 AM, Maxfield Longchamp wrote:
> Hi,
>
> I'm using pylith to model a ridge-transform-ridge section and I'm getting an error,
>
> "RuntimeError: Error occurred while adjusting topology to create cohesive cells for fault 'ridge_posx'. Error detected while in PETSc function."
>
> What causes this error and do you have suggestions for how to resolve it? I'm meshing in LaGrit, let me know if there are files I can post that would be useful.
>
> Thank you!
>
> -Maxfield
> _______________________________________________
> CIG-SHORT mailing list
> CIG-SHORT at geodynamics.org
> http://lists.geodynamics.org/cgi-bin/mailman/listinfo/cig-short
>

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