[CIG-SHORT] Pylith problem: PETSC ERROR

Wed Feb 18 03:53:59 PST 2015

Ok, thanks

Alessandro DC

Date: Wed, 18 Feb 2015 05:47:23 -0600
From: knepley at mcs.anl.gov
To: cig-short at geodynamics.org
Subject: Re: [CIG-SHORT] Pylith problem: PETSC ERROR

On Wed, Feb 18, 2015 at 5:44 AM, Alessandro Di Cunzolo <twinalexmax at hotmail.it> wrote:

Hi,
Have you released the new version with the  fault orientation code fixed?

We have approved the release candidate, so we hope the official release will happen by Friday.
  Thanks,
     Matt Regards,

Alessandro DC

From: twinalexmax at hotmail.it
To: cig-short at geodynamics.org
Date: Thu, 12 Feb 2015 16:51:38 +0100
Subject: Re: [CIG-SHORT] Pylith problem: PETSC ERROR

Thanks for the quick reply, 
Ok, i will wait your upgrade .

Regards,

Alessandro DC

Date: Thu, 12 Feb 2015 09:38:45 -0600
From: knepley at mcs.anl.gov
To: cig-short at geodynamics.org
Subject: Re: [CIG-SHORT] Pylith problem: PETSC ERROR

On Thu, Feb 12, 2015 at 8:24 AM, Alessandro Di Cunzolo <twinalexmax at hotmail.it> wrote:

Good morning,
i work with Pylith and i am getting this error:

I know this is never what you want to here, but we have recently fixed some bugs in the faultorientation code. We expect to make a release at the end of this week. Would it be feasiblefor you to test this upgrade when we release it?
  Thanks,
     Matt -------------------------

 -- Initializing fault 'pPernicana'.
[0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
[0]PETSC ERROR: Invalid argument
[0]PETSC ERROR: Faces should separate only two cells, not 4
[0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting.
[0]PETSC ERROR: Petsc Development GIT revision: v3.4.4-4559-g852d360  GIT Date: 2014-05-19 15:04:32 -0500
[0]PETSC ERROR: /opt/pylith-2.0.0/bin/mpinemesis on a arch-pylith-gcc-opt named yoda by adicunzolo Thu Feb 12 15:11:15 2015
[0]PETSC ERROR: Configure options --prefix=/home/buildbot/install/pylith_centos_x86_64_binbot --download-fblaslapack=1 --with-c2html=0 --CXXFLAGS=-DMPICH_IGNORE_CXX_SEEK --with-clanguage=C --with-mpicompilers=1 --with-debugging=0 --download-chaco=1 --download-ml=1 --with-hdf5=1 --with-hdf5-dir=/home/buildbot/install/pylith_centos_x86_64_binbot --with-x=0 --with-ssl=0 --with-shared-libraries=1
[0]PETSC ERROR: #1 DMPlexOrient() line 2400 in /home/buildbot/slave/build/pylith_centos_x86_64_binbot/PETSc/petsc-pylith/binaries/src/dm/impls/plex/plex.c
[0]PETSC ERROR: #2 static void pylith::faults::CohesiveTopology::createFaultParallel(pylith::topology::Mesh*, const pylith::topology::Mesh&, int, const char*, bool)() line 197 in faults/CohesiveTopology.cc
Fatal error. Calling MPI_Abort() to abort PyLith application.
Traceback (most recent call last):
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/apps/PetscApplication.py", line 64, in onComputeNodes
    self.main(*args, **kwds)
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/apps/PyLithApp.py", line 125, in main
    self.problem.initialize()
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/problems/TimeDependent.py", line 119, in initialize
    self.formulation.initialize(self.dimension, self.normalizer)
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/problems/Implicit.py", line 122, in initialize
    self._initialize(dimension, normalizer)
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/problems/Formulation.py", line 470, in _initialize
    integrator.initialize(totalTime, numTimeSteps, normalizer)
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/faults/FaultCohesiveKin.py", line 166, in initialize
    FaultCohesive.initialize(self, totalTime, numTimeSteps, normalizer)
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/faults/Fault.py", line 170, in initialize
    ModuleFault.initialize(self, self.mesh(), self.upDir)
  File "/opt/pylith-2.0.0/lib/python2.7/site-packages/pylith/faults/faults.py", line 320, in initialize
    def initialize(self, *args): return _faults.Fault_initialize(self, *args)
RuntimeError: Error detected while in PETSc function.
application called MPI_Abort(MPI_COMM_WORLD, -1) - process 0
/opt/pylith-2.0.0/bin/nemesis: mpirun: exit 255
/opt/pylith-2.0.0/bin/pylith: /opt/pylith-2.0.0/bin/nemesis: exit 1

-----------------------------------------------

Do you have any idea about the cause of this problem?? 
Regards,

Alessandro DC

_______________________________________________

CIG-SHORT mailing list

CIG-SHORT at geodynamics.org

http://lists.geodynamics.org/cgi-bin/mailman/listinfo/cig-short

-- 
What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.
-- Norbert Wiener

_______________________________________________
CIG-SHORT mailing list
CIG-SHORT at geodynamics.org
http://lists.geodynamics.org/cgi-bin/mailman/listinfo/cig-short 		 	   		  

_______________________________________________
CIG-SHORT mailing list
CIG-SHORT at geodynamics.org
http://lists.geodynamics.org/cgi-bin/mailman/listinfo/cig-short 		 	   		  

_______________________________________________

CIG-SHORT mailing list

CIG-SHORT at geodynamics.org

http://lists.geodynamics.org/cgi-bin/mailman/listinfo/cig-short

-- 
What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.
-- Norbert Wiener

_______________________________________________
CIG-SHORT mailing list
CIG-SHORT at geodynamics.org
http://lists.geodynamics.org/cgi-bin/mailman/listinfo/cig-short 		 	   		  
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.geodynamics.org/pipermail/cig-short/attachments/20150218/6753cc2b/attachment.html>