[CIG-SHORT] Updated PyLith/Python - Error

Thu Oct 29 16:47:16 PDT 2015

Sorry, Brad. To answer your questions: I'm using the binary, V 2.7.1, and when I run the examples, I get the same error as I just sent (2nd email).

Bobby

________________________________________
From: Karimi, Bobak
Sent: Thursday, October 29, 2015 7:33 PM
To: cig-short at geodynamics.org
Subject: Re: [CIG-SHORT] Updated PyLith/Python - Error

So, I just happened to find one line of reference text that I forgot to turn off, and that seemed to change my error to what is below. I tried rebooting (I read on a previous thread that suggestion was made for windows users).

$ pylith WNAF.cfg
      0 [main] nemesis 656 child_info_fork::abort: unable to remap _collections.
dll to same address as parent (00360000) - try running rebaseall
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/usr/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/schedule
rs/__init__.py", line 53, in jobstart
    kwds = kwds)
  File "/usr/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/applicat
ions/__init__.py", line 41, in start
    shell.run(**kwds)
  File "/usr/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/applicat
ions/Shell.py", line 143, in run
    method(*args, **kwds)
  File "/usr/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/applicat
ions/SuperScript.py", line 49, in execute
    self.main(*args, **kwds)
  File "/usr/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/applicat
ions/SuperScript.py", line 58, in main
    self.runSubscript(*args, **kwds)
  File "/usr/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/schedule
rs/BatchScript.py", line 39, in runSubscript
    super(BatchScript, self).runSubscript(*args, **kwds)
  File "/usr/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/applicat
ions/SuperScript.py", line 62, in runSubscript
    self.subscript.run(*args, **kwds)
  File "/usr/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/applicat
ions/Application.py", line 42, in run
    shell.run(*args, **kwds)
  File "/usr/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/applicat
ions/Shell.py", line 143, in run
    method(*args, **kwds)
  File "/usr/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/mpi/Applicati
on.py", line 90, in _onLauncherNode
    self.onLauncherNode(*args, **kwds)
  File "/usr/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/mpi/Applicati
on.py", line 94, in onLauncherNode
    self.launchParallelRun(*args, **kwds)
  File "/usr/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/mpi/Applicati
on.py", line 103, in launchParallelRun
    launcher.launch()
  File "/usr/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/mpi/Launcher.
py", line 45, in launch
    pid = os.fork()
OSError: [Errno 11] Resource temporarily unavailable
/usr/bin/pylith: /usr/bin/nemesis: exit 1

________________________________________
From: CIG-SHORT <cig-short-bounces at geodynamics.org> on behalf of Brad Aagaard <baagaard at usgs.gov>
Sent: Thursday, October 29, 2015 7:21 PM
To: cig-short at geodynamics.org
Subject: Re: [CIG-SHORT] Updated PyLith/Python - Error

Bobak,

Are you using the binary or building from source? Are you using v2.1.0?
Can you run the examples? If you built from source, did you run the test
suite via "make check"?

Thanks,
Brad

On 10/29/2015 03:38 PM, Karimi, Bobak wrote:
> Hello all,
>
>
> I recently updated PyLith to the most recent version, and python to 2.7.1, and am getting the error:
>
>
> $ pylith WNAF.cfg
> Traceback (most recent call last):
>    File "/usr/bin/pylith", line 27, in <module>
>      start(applicationClass=PyLithApp)
>    File "/usr/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/applicat
> ions/__init__.py", line 41, in start
>      shell.run(**kwds)
>    File "/usr/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/applicat
> ions/Shell.py", line 73, in run
>      self.initializeConfiguration(context)
>    File "/usr/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/inventor
> y/Configurable.py", line 55, in initializeConfiguration
>      return self.inventory.initializeConfiguration(context)
>    File "/usr/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/inventor
> y/Inventory.py", line 26, in initializeConfiguration
>      extraDepositories=self._priv_depositories)
>    File "/usr/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/inventor
> y/odb/Curator.py", line 37, in getTraits
>      errorHandler=self._recordTraitLookup):
>    File "/usr/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/odb/fs/C
> urator.py", line 70, in loadSymbol
>      shelf = codec.open(spec, 'r')
>    File "/usr/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/odb/fs/C
> odecODB.py", line 33, in open
>      self._decode(shelf)
>    File "/usr/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/inventor
> y/cfg/CodecConfig.py", line 37, in _decode
>      parser.read(shelf.name)
>    File "/usr/lib/python2.7/ConfigParser.py", line 305, in read
>      self._read(fp, filename)
>    File "/usr/lib/python2.7/site-packages/pythia-0.8.1.15-py2.7.egg/pyre/inventor
> y/cfg/Parser.py", line 98, in _read
>      SafeConfigParser._read(self, self._sections.fp, fpname)
>    File "/usr/lib/python2.7/ConfigParser.py", line 493, in _read
>      cursect[optname].append(value)
> AttributeError: 'str' object has no attribute 'append'
>
>
>
> I think, If I'm understanding right, that the error has something to do with PyLith reaching out to the Python libraries, but I'm unsure of how to fix this (if that is the source of the problem).
>
>
> Any help would be much appreciated!
>
>
> Thanks,
> Bobby
>
>
>
>
>
> _______________________________________________
> CIG-SHORT mailing list
> CIG-SHORT at geodynamics.org
> http://lists.geodynamics.org/cgi-bin/mailman/listinfo/cig-short
>

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