[CIG-SHORT] How to use cluster installation of HDF5 with Pylith

[Cesar Sul]

Hi,


I would like to do a local install of Pylith on a cluster. The sysadmins have installed some of the Pylith dependencies in a non standard location so I'm running into problems when I try to configure.


The commands I'm using are


export CPPFLAGS=-I/path/to/hdf5/include

./configure --disable-hdf5 --prefix=$PYLITH_HOME/pylith


The relevant portion of the error message is:


...

checking hdf5.h usability... no

checking hdf5.h presence... no

checking for hdf5.h... no

configure: error: HDF5 header not found; try CPPFLAGS="-I<hdf5 include dir>"


The file hdf5.h does exist in the location pointed to by $CPPFLAGS and I receive similar error messages when I try this with the other dependent software. Please see the attached config.log for more information.


Any advice would be appreciated.


Thanks,

Cesar Sul





Research Facilitator

Center for High-Performance Computing

University of Southern California

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