[CIG-SHORT] pylith-1.8.0

[Matthew Knepley]

On Sat, Dec 16, 2017 at 11:43 PM, Ehsan Haghighat <ehsanh at mit.edu> wrote:

> Hello Brad,
>
> I was able to compile the 1.8.0 libraries following your suggestions (most
> of the repositories need to be changed). I can share the Makefile with you
> if you want to update the 1.8.0 then others can still install it if needed.
>
> However, after adding my libraries, I get following errors that I cannot
> figure them out. Can you help here? Anything you can think of? Really
> appreciated. The make works fine, but when I want to install it (make
> install), I get following error.
>
> Best,
> Ehsan
>
>
>
>
> -----------------
> libtool: install: /usr/bin/install -c .libs/_bcmodule.soT
> /nobackup1/ehsanhaghighat/dev/GRS-1.8.0/pylith/lib/python2.
> 7/site-packages/pylith/bc/_bcmodule.so
> libtool: install: /usr/bin/install -c .libs/_bcmodule.lai
> /nobackup1/ehsanhaghighat/dev/GRS-1.8.0/pylith/lib/python2.
> 7/site-packages/pylith/bc/_bcmodule.la
> libtool: finish: PATH="/nobackup1/ehsanhaghighat/dev/GRS-1.8.0/
> pylith/bin:/nobackup1/ehsanhaghighat/dev/GRS-1.8.0/pylith/bin:/nobackup1/
> ehsanhaghighat/dev/GRS-1.8.0/pylith/bin:/nobackup1/
> ehsanhaghighat/dev/GRS-2.1.0/pylith/bin:/nobackup1/
> ehsanhaghighat/.software/os6/grs-2.1.0/bin:/home/
> ehsanhaghighat/tools/GPRS-Only/GPRS08/bin:/usr/lib64/qt-
> 3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/
> sbin:/sbin:/sbin:/usr/sbin:/sbin" ldconfig -n
> /nobackup1/ehsanhaghighat/dev/GRS-1.8.0/pylith/lib/python2.
> 7/site-packages/pylith/bc
> ----------------------------------------------------------------------
> Libraries have been installed in:
>    /nobackup1/ehsanhaghighat/dev/GRS-1.8.0/pylith/lib/python2.
> 7/site-packages/pylith/bc
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
>    - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
>      during execution
>    - add LIBDIR to the `LD_RUN_PATH' environment variable
>      during linking
>    - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
>    - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
> ----------------------------------------------------------------------
> test -z "/nobackup1/ehsanhaghighat/dev/GRS-1.8.0/pylith/lib/
> python2.7/site-packages/pylith/bc" || /bin/mkdir -p
> "/nobackup1/ehsanhaghighat/dev/GRS-1.8.0/pylith/lib/
> python2.7/site-packages/pylith/bc"
>  /usr/bin/install -c -m 644 ../../../pylith-1.8.0/modulesrc/bc/bc.py
> '/nobackup1/ehsanhaghighat/dev/GRS-1.8.0/pylith/lib/
> python2.7/site-packages/pylith/bc'
> /bin/sh: line 16: ../../../pylith-1.8.0/./aux-config/py-compile:
> Permission denied
>

I don't know what you added, but this looks like a UNIX permissions
problem. Either you do not
have access to that file, or it is not executable and you are trying to run
it.

  Thanks,

    Matt


> make[3]: *** [install-subpkgpyexecPYTHON] Error 126
> make[3]: Leaving directory `/nobackup1b/users/
> ehsanhaghighat/dev/GRS-1.8.0/build/pylith/pylith-build/modulesrc/bc'
> make[2]: *** [install-am] Error 2
> make[2]: Leaving directory `/nobackup1b/users/
> ehsanhaghighat/dev/GRS-1.8.0/build/pylith/pylith-build/modulesrc/bc'
> make[1]: *** [install-recursive] Error 1
> make[1]: Leaving directory `/nobackup1b/users/
> ehsanhaghighat/dev/GRS-1.8.0/build/pylith/pylith-build/modulesrc'
> make: *** [install-recursive] Error 1
>
> -----------------------
>
> > On Dec 15, 2017, at 5:18 PM, Brad Aagaard <baagaard at usgs.gov> wrote:
> >
> > On 12/15/2017 01:53 PM, Ehsan Haghighat wrote:
> >> You mentioned earlier about compiling the 1.8.0 that I should download
> manually the packages; where should I download the from? And how can I do
> that? (Because of if the link in Makefile is not working, it should not be
> accessible externally either. Am I missing something)
> >
> > You should be able to find most of the dependencies here:
> > http://geoweb.cse.ucdavis.edu/~buildbot/deps
> >
> > If they are not there, then you may need to get them from the individual
> sites. For example, Python comes from python.org.
> >
> > Regards,
> > Brad
> > _______________________________________________
> > CIG-SHORT mailing list
> > CIG-SHORT at geodynamics.org
> > http://lists.geodynamics.org/cgi-bin/mailman/listinfo/cig-short
>
>
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