[CIG-SHORT] PyLith version 2.2.0 installation from source

Thu Jun 8 09:44:00 PDT 2017

Dear Brad and Matt,

Following up on your suggestions:  I used the recommended settings that you
mentioned on the previous e-mail but unfortunately the error persist.

  gcc: no   <---- WAS YES
  Python: yes
  mpi: no
  [...]

See all the log files below on the dropbox link.

https://www.dropbox.com/sh/g48lkxf81nn3hio/AADASW4qBvEWs42vKN4blEfIa?dl=0

Perhaps I should try again using "--enable-gcc", " --enable-mpi" and
"--enable-python"
?

thank you
Josimar

On Thu, Jun 8, 2017 at 10:57 AM, Matthew Knepley <knepley at rice.edu> wrote:

> On Thu, Jun 8, 2017 at 7:58 AM, Josimar Alves da Silva <
> jsilva.mit at gmail.com> wrote:
>
>> Brad,
>>
>> Thank you so much for the help. The MPI version seems compatible with
>> what is asked on the installation file:
>>
>
> The question is where -fp-model is coming from. I think it might be from
> the Python installation, since this is compiling
> a module. This would lead me to build my own Python, since the Python you
> have must have been built with
> something else (clang?).
>
>   Thanks,
>
>     Matt
>
>
>> "mpicc -show" results in:
>>
>> gcc -I/cm/shared/engaging/openmpi/1.8.8/include -pthread -Wl,-rpath
>> -Wl,/cm/shared/engaging/openmpi/1.8.8/lib -Wl,--enable-new-dtags
>> -L/cm/shared/engaging/openmpi/1.8.8/lib -lmpi
>>
>>
>> However, the gcc version is older than what is asked on the installation
>> file:
>>
>>
>> cm/shared/apps/gcc/4.8.4/bin/gcc
>>
>>
>>
>> In order to update the gcc version,  I attempted to build PyLith again
>> using the following configuration:
>>
>> ./configure  --with-make-threads=2 --prefix=$HOME/pylith --enable-python
>> --enable-force-install --enable-gcc
>>
>> However I still got the error message that I sent on the previous e-mail.
>> Note that I did load the "setup.sh" file before "make".
>>
>> You can find all the log files that you asked on the previous e-mail,
>> along with a shell script that I am using to build pylith, on the dropbox
>> link below:
>>
>> https://www.dropbox.com/sh/xjr5dn23ptxivv3/AACLybuo8ckIvk9tZwOl6IrVa?dl=0
>>
>> Let me know if you have any further suggestions.
>>
>> thank you in advance for the help,
>>
>> Josimar
>>
>>
>>
>> On Wed, Jun 7, 2017 at 6:10 PM, Brad Aagaard <baagaard at usgs.gov> wrote:
>>
>>> Josimar,
>>>
>>> The error you are getting seems to suggest that the compiler does not
>>> recognize the -fp-model strict command line argument. This could be the
>>> case if a different compiler is being used than the one it thinks it should
>>> be using.
>>>
>>> Check to make sure the gcc and MPI in your path are consistent. Usually
>>> "mpicc -show" will show you which compiler is being used. Also make sure
>>> the shell environment when you build matches the one used during the
>>> configure (and loads the setup.sh generated in the configure process).
>>>
>>> If you still get stuck, send the config.log for the top-level installer
>>> configure, and the config.log and make.log (capture all of the make output)
>>> for the package that fails to build.
>>>
>>> Regards,
>>> Brad
>>>
>>>
>>>
>>>
>>>
>>>
>>> On 06/07/2017 01:39 PM, Josimar Alves da Silva wrote:
>>>
>>>> Dear Brad,
>>>>
>>>> I am building PyLith version 2.2.0 from source on a linux machine. I am
>>>> getting the error below.
>>>>
>>>> See computer information below along with the error message at the end
>>>> of the e-mail. The config.log file is also attached.
>>>>
>>>> Please let me know if you have seen this error before and how to
>>>> correct it.
>>>>
>>>> thank you in advance,
>>>> Josimar
>>>>
>>>>
>>>>
>>>> ############# BASIC COMPUTER INFORMATION HERE
>>>>
>>>> Linux eofe4 2.6.32-504.30.3.el6.x86_64 #1 SMP Wed Jul 15 10:13:09 UTC
>>>> 2015 x86_64 x86_64 x86_64 GNU/Linux
>>>>
>>>>
>>>> ########################
>>>>
>>>> Architecture:          x86_64
>>>>
>>>> CPU op-mode(s):        32-bit, 64-bit
>>>>
>>>> Byte Order:            Little Endian
>>>>
>>>> CPU(s):                16
>>>>
>>>> On-line CPU(s) list:   0-15
>>>>
>>>> Thread(s) per core:    1
>>>>
>>>> Core(s) per socket:    8
>>>>
>>>> Socket(s):             2
>>>>
>>>> NUMA node(s):          2
>>>>
>>>> Vendor ID:             GenuineIntel
>>>>
>>>> CPU family:            6
>>>>
>>>> Model:                 45
>>>>
>>>> Model name:            Intel(R) Xeon(R) CPU E5-2650 0 @ 2.00GHz
>>>>
>>>> Stepping:              7
>>>>
>>>> CPU MHz:               1999.998
>>>>
>>>> BogoMIPS:              3999.47
>>>>
>>>> Virtualization:        VT-x
>>>>
>>>> L1d cache:             32K
>>>>
>>>> L1i cache:             32K
>>>>
>>>> L2 cache:              256K
>>>>
>>>> L3 cache:              20480K
>>>>
>>>> NUMA node0 CPU(s):     0,2,4,6,8,10,12,14
>>>>
>>>> NUMA node1 CPU(s):     1,3,5,7,9,11,13,15
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> ############# ERRO MESSAGE FROM PYLITH INSTALLATION HERE #############
>>>>
>>>> make[4]: Entering directory `/home/josimar/build/pylith/python-build'
>>>>
>>>> mpicc -c -fno-strict-aliasing -fp-model strict -g -O2 -DNDEBUG -g
>>>> -fwrapv -O3 -Wall -Wstrict-prototypes  -I. -IInclude
>>>> -I../Python-2.7.13/Include -I/home/josimar/pylith/include  -fPIC
>>>> -DPy_BUILD_CORE -o Modules/python.o ../Python-2.7.13/Modules/python.c
>>>>
>>>> mpicc -c -fno-strict-aliasing -fp-model strict -g -O2 -DNDEBUG -g
>>>> -fwrapv -O3 -Wall -Wstrict-prototypes  -I. -IInclude
>>>> -I../Python-2.7.13/Include -I/home/josimar/pylith/include  -fPIC
>>>> -DPy_BUILD_CORE -o Parser/acceler.o ../Python-2.7.13/Parser/acceler.c
>>>>
>>>> gcc: error: strict: No such file or directory
>>>>
>>>> gcc: error: unrecognized command line option ‘-fp-model’
>>>>
>>>> make[4]: *** [Modules/python.o] Error 1
>>>>
>>>> make[4]: *** Waiting for unfinished jobs....
>>>>
>>>> gcc: error: strict: No such file or directory
>>>>
>>>> gcc: error: unrecognized command line option ‘-fp-model’
>>>>
>>>> make[4]: *** [Parser/acceler.o] Error 1
>>>>
>>>> make[4]: Leaving directory `/home/josimar/build/pylith/python-build'
>>>>
>>>> make[3]: *** [python] Error 2
>>>>
>>>> make[3]: Leaving directory `/home/josimar/build/pylith'
>>>>
>>>> make[2]: *** [installed_python] Error 2
>>>>
>>>> make[2]: Leaving directory `/home/josimar/build/pylith'
>>>>
>>>> make[1]: *** [installed_swig] Error 2
>>>>
>>>> make[1]: Leaving directory `/home/josimar/build/pylith'
>>>>
>>>> make: *** [installed_pylith] Error 2
>>>>
>>>>
>>>>
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